Literature DB >> 30249792

A Druggable Genome Screen Identifies Modifiers of α-Synuclein Levels via a Tiered Cross-Species Validation Approach.

Maxime W C Rousseaux1,2, Gabriel E Vázquez-Vélez3,4,5, Ismael Al-Ramahi3,2, Hyun-Hwan Jeong3,2, Aleksandar Bajić3,2, Jean-Pierre Revelli3,2, Hui Ye3,2, Emily T Phan3,2, Jennifer M Deger3,2, Alma M Perez3,2, Ji-Yoen Kim3,2, Laura A Lavery3,2, Qikia Xu6, Mamie Z Li6, Hyojin Kang3,2, Jean J Kim7,8,9, Joshua M Shulman3,2,10,11, Thomas F Westbrook2,4,12,13, Stephen J Elledge6, Zhandong Liu3,14, Juan Botas3,2,4, Huda Y Zoghbi1,2,4,14,15.   

Abstract

Accumulation of α-Synuclein (α-Syn) causes Parkinson's disease (PD) as well as other synucleopathies. α-Syn is the major component of Lewy bodies and Lewy neurites, the proteinaceous aggregates that are a hallmark of sporadic PD. In familial forms of PD, mutations or copy number variations in SNCA (the α-Syn gene) result in a net increase of its protein levels. Furthermore, common risk variants tied to PD are associated with small increases of wild-type α-Syn levels. These findings are further bolstered by animal studies which show that overexpression of α-Syn is sufficient to cause PD-like features. Thus, increased α-Syn levels are intrinsically tied to PD pathogenesis and underscore the importance of identifying the factors that regulate its levels. In this study, we establish a pooled RNAi screening approach and validation pipeline to probe the druggable genome for modifiers of α-Syn levels and identify 60 promising targets. Using a cross-species, tiered validation approach, we validate six strong candidates that modulate α-Syn levels and toxicity in cell lines, Drosophila, human neurons, and mouse brain of both sexes. More broadly, this genetic strategy and validation pipeline can be applied for the identification of therapeutic targets for disorders driven by dosage-sensitive proteins.SIGNIFICANCE STATEMENT We present a research strategy for the systematic identification and validation of genes modulating the levels of α-Synuclein, a protein involved in Parkinson's disease. A cell-based screen of the druggable genome (>7,500 genes that are potential therapeutic targets) yielded many modulators of α-Synuclein that were subsequently confirmed and validated in Drosophila, human neurons, and mouse brain. This approach has broad applicability to the multitude of neurological diseases that are caused by mutations in genes whose dosage is critical for brain function.
Copyright © 2018 the authors 0270-6474/18/389287-16$15.00/0.

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Keywords:  modifier; neurodegeneration; pooled screen; protein dosage; shRNA; α-Synuclein

Mesh:

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Year:  2018        PMID: 30249792      PMCID: PMC6199406          DOI: 10.1523/JNEUROSCI.0254-18.2018

Source DB:  PubMed          Journal:  J Neurosci        ISSN: 0270-6474            Impact factor:   6.167


  88 in total

1.  iPSC-derived dopamine neurons reveal differences between monozygotic twins discordant for Parkinson's disease.

Authors:  Chris M Woodard; Brian A Campos; Sheng-Han Kuo; Melissa J Nirenberg; Michael W Nestor; Matthew Zimmer; Eugene V Mosharov; David Sulzer; Hongyan Zhou; Daniel Paull; Lorraine Clark; Eric E Schadt; Sergio Pablo Sardi; Lee Rubin; Kevin Eggan; Mathew Brock; Scott Lipnick; Mahendra Rao; Stephen Chang; Aiqun Li; Scott A Noggle
Journal:  Cell Rep       Date:  2014-11-06       Impact factor: 9.423

2.  Proteomics. Tissue-based map of the human proteome.

Authors:  Mathias Uhlén; Linn Fagerberg; Björn M Hallström; Cecilia Lindskog; Per Oksvold; Adil Mardinoglu; Åsa Sivertsson; Caroline Kampf; Evelina Sjöstedt; Anna Asplund; IngMarie Olsson; Karolina Edlund; Emma Lundberg; Sanjay Navani; Cristina Al-Khalili Szigyarto; Jacob Odeberg; Dijana Djureinovic; Jenny Ottosson Takanen; Sophia Hober; Tove Alm; Per-Henrik Edqvist; Holger Berling; Hanna Tegel; Jan Mulder; Johan Rockberg; Peter Nilsson; Jochen M Schwenk; Marica Hamsten; Kalle von Feilitzen; Mattias Forsberg; Lukas Persson; Fredric Johansson; Martin Zwahlen; Gunnar von Heijne; Jens Nielsen; Fredrik Pontén
Journal:  Science       Date:  2015-01-23       Impact factor: 47.728

Review 3.  High-throughput functional genomics using CRISPR-Cas9.

Authors:  Ophir Shalem; Neville E Sanjana; Feng Zhang
Journal:  Nat Rev Genet       Date:  2015-04-09       Impact factor: 53.242

4.  A genome-scale shRNA resource for transgenic RNAi in Drosophila.

Authors:  Jian-Quan Ni; Rui Zhou; Benjamin Czech; Lu-Ping Liu; Laura Holderbaum; Donghui Yang-Zhou; Hye-Seok Shim; Rong Tao; Dominik Handler; Phillip Karpowicz; Richard Binari; Matthew Booker; Julius Brennecke; Lizabeth A Perkins; Gregory J Hannon; Norbert Perrimon
Journal:  Nat Methods       Date:  2011-04-03       Impact factor: 28.547

Review 5.  Parkinson's disease and α-synuclein expression.

Authors:  Michael J Devine; Katrina Gwinn; Andrew Singleton; John Hardy
Journal:  Mov Disord       Date:  2011-09-01       Impact factor: 10.338

6.  β2-Adrenoreceptor is a regulator of the α-synuclein gene driving risk of Parkinson's disease.

Authors:  Shuchi Mittal; Kjetil Bjørnevik; Doo Soon Im; Adrian Flierl; Xianjun Dong; Joseph J Locascio; Kristine M Abo; Elizabeth Long; Ming Jin; Bing Xu; Yang K Xiang; Jean-Christophe Rochet; Anders Engeland; Patrizia Rizzu; Peter Heutink; Tim Bartels; Dennis J Selkoe; Barbara J Caldarone; Marcie A Glicksman; Vikram Khurana; Birgitt Schüle; David S Park; Trond Riise; Clemens R Scherzer
Journal:  Science       Date:  2017-09-01       Impact factor: 47.728

Review 7.  The PMP22 gene and its related diseases.

Authors:  Jun Li; Brett Parker; Colin Martyn; Chandramohan Natarajan; Jiasong Guo
Journal:  Mol Neurobiol       Date:  2012-12-07       Impact factor: 5.590

8.  SCFbeta-TRCP controls oncogenic transformation and neural differentiation through REST degradation.

Authors:  Thomas F Westbrook; Guang Hu; Xiaolu L Ang; Peter Mulligan; Natalya N Pavlova; Anthony Liang; Yumei Leng; Rene Maehr; Yang Shi; J Wade Harper; Stephen J Elledge
Journal:  Nature       Date:  2008-03-20       Impact factor: 49.962

9.  Prohibitin: A Novel Molecular Player in KDEL Receptor Signalling.

Authors:  Monica Giannotta; Giorgia Fragassi; Antonio Tamburro; Capone Vanessa; Alberto Luini; Michele Sallese
Journal:  Biomed Res Int       Date:  2015-05-10       Impact factor: 3.411

10.  LGALS3BP, lectin galactoside-binding soluble 3 binding protein, promotes oncogenic cellular events impeded by antibody intervention.

Authors:  P Stampolidis; A Ullrich; S Iacobelli
Journal:  Oncogene       Date:  2013-12-23       Impact factor: 9.867

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  14 in total

1.  Large-Scale Transgenic Drosophila Resource Collections for Loss- and Gain-of-Function Studies.

Authors:  Jonathan Zirin; Yanhui Hu; Luping Liu; Donghui Yang-Zhou; Ryan Colbeth; Dong Yan; Ben Ewen-Campen; Rong Tao; Eric Vogt; Sara VanNest; Cooper Cavers; Christians Villalta; Aram Comjean; Jin Sun; Xia Wang; Yu Jia; Ruibao Zhu; Ping Peng; Jinchao Yu; Da Shen; Yuhao Qiu; Limmond Ayisi; Henna Ragoowansi; Ethan Fenton; Senait Efrem; Annette Parks; Kuniaki Saito; Shu Kondo; Liz Perkins; Stephanie E Mohr; Jianquan Ni; Norbert Perrimon
Journal:  Genetics       Date:  2020-02-18       Impact factor: 4.562

2.  Doublecortin-like Kinase 1 Regulates α-Synuclein Levels and Toxicity.

Authors:  Gabriel E Vázquez-Vélez; Kristyn A Gonzales; Jean-Pierre Revelli; Carolyn J Adamski; Fatemeh Alavi Naini; Aleksandar Bajić; Evelyn Craigen; Ronald Richman; Sabrina M Heman-Ackah; Matthew J A Wood; Maxime W C Rousseaux; Huda Y Zoghbi
Journal:  J Neurosci       Date:  2019-11-20       Impact factor: 6.167

3.  Cross-species genetic screens to identify kinase targets for APP reduction in Alzheimer's disease.

Authors:  Claudia H Huichalaf; Ismael Al-Ramahi; Kyung-Won Park; Stacy D Grunke; Nan Lu; Maria de Haro; Karla El-Zein; Tatiana Gallego-Flores; Alma M Perez; Sung Yun Jung; Juan Botas; Huda Y Zoghbi; Joanna L Jankowsky
Journal:  Hum Mol Genet       Date:  2019-06-15       Impact factor: 6.150

4.  Identification of risk genes for Alzheimer's disease by gene embedding.

Authors:  Yashwanth Lagisetty; Thomas Bourquard; Ismael Al-Ramahi; Carl Grant Mangleburg; Samantha Mota; Shirin Soleimani; Joshua M Shulman; Juan Botas; Kwanghyuk Lee; Olivier Lichtarge
Journal:  Cell Genom       Date:  2022-07-26

5.  LGALS3 (galectin 3) mediates an unconventional secretion of SNCA/α-synuclein in response to lysosomal membrane damage by the autophagic-lysosomal pathway in human midbrain dopamine neurons.

Authors:  Kevin Burbidge; David J Rademacher; Jessica Mattick; Stephanie Zack; Andrea Grillini; Luc Bousset; Ochan Kwon; Konrad Kubicki; Alexander Simon; Ronald Melki; Edward M Campbell
Journal:  Autophagy       Date:  2021-10-06       Impact factor: 13.391

6.  Spliceosome-targeted therapies trigger an antiviral immune response in triple-negative breast cancer.

Authors:  Elizabeth A Bowling; Jarey H Wang; Fade Gong; William Wu; Nicholas J Neill; Ik Sun Kim; Siddhartha Tyagi; Mayra Orellana; Sarah J Kurley; Rocio Dominguez-Vidaña; Hsiang-Ching Chung; Tiffany Y-T Hsu; Julien Dubrulle; Alexander B Saltzman; Heyuan Li; Jitendra K Meena; Gino M Canlas; Srinivas Chamakuri; Swarnima Singh; Lukas M Simon; Calla M Olson; Lacey E Dobrolecki; Michael T Lewis; Bing Zhang; Ido Golding; Jeffrey M Rosen; Damian W Young; Anna Malovannaya; Fabio Stossi; George Miles; Matthew J Ellis; Lihua Yu; Silvia Buonamici; Charles Y Lin; Kristen L Karlin; Xiang H-F Zhang; Thomas F Westbrook
Journal:  Cell       Date:  2021-01-14       Impact factor: 41.582

7.  Dual targeting of brain region-specific kinases potentiates neurological rescue in Spinocerebellar ataxia type 1.

Authors:  Won-Seok Lee; Laura Lavery; Maxime W C Rousseaux; Eric B Rutledge; Youjin Jang; Ying-Wooi Wan; Sih-Rong Wu; Wonho Kim; Ismael Al-Ramahi; Smruti Rath; Carolyn J Adamski; Vitaliy V Bondar; Ambika Tewari; Shirin Soleimani; Samantha Mota; Hari K Yalamanchili; Harry T Orr; Zhandong Liu; Juan Botas; Huda Y Zoghbi
Journal:  EMBO J       Date:  2021-03-11       Impact factor: 11.598

Review 8.  CRISPR-based functional genomics for neurological disease.

Authors:  Martin Kampmann
Journal:  Nat Rev Neurol       Date:  2020-07-08       Impact factor: 42.937

9.  Genome-wide CRISPR screen identifies protein pathways modulating tau protein levels in neurons.

Authors:  Carlos G Sanchez; Christopher M Acker; Audrey Gray; Malini Varadarajan; Cheng Song; Nadire R Cochran; Steven Paula; Alicia Lindeman; Shaojian An; Gregory McAllister; John Alford; John Reece-Hoyes; Carsten Russ; Lucas Craig; Ketthsy Capre; Christian Doherty; Gregory R Hoffman; Sarah J Luchansky; Manuela Polydoro; Ricardo Dolmetsch; Fiona Elwood
Journal:  Commun Biol       Date:  2021-06-14

10.  miR760 regulates ATXN1 levels via interaction with its 5' untranslated region.

Authors:  Larissa Nitschke; Ambika Tewari; Stephanie L Coffin; Eder Xhako; Kaifang Pang; Vincenzo A Gennarino; Jennifer L Johnson; Francisco A Blanco; Zhandong Liu; Huda Y Zoghbi
Journal:  Genes Dev       Date:  2020-08-06       Impact factor: 11.361

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