BACKGROUND: Visual landmarks are used by head direction (HD) cells to establish and help update the animal's representation of head direction, for use in orientation and navigation. Two cortical regions that are connected to primary visual areas, postsubiculum (PoS) and retrosplenial cortex (RSC), possess HD cells: we investigated whether they differ in how they process visual landmarks. METHODS: We compared PoS and RSC HD cell activity from tetrode-implanted rats exploring an arena in which correct HD orientation required discrimination of two opposing landmarks having high, moderate or low discriminability. RESULTS: RSC HD cells had higher firing rates than PoS HD cells and slightly lower modulation by angular head velocity, and anticipated actual head direction by ~48 ms, indicating that RSC spiking leads PoS spiking. Otherwise, we saw no differences in landmark processing, in that HD cells in both regions showed equal responsiveness to and discrimination of the cues, with cells in both regions having unipolar directional tuning curves and showing better discrimination of the highly discriminable cues. There was a small spatial component to the signal in some cells, consistent with their role in interacting with the place cell navigation system, and there was also slight modulation by running speed. Neither region showed theta modulation of HD cell spiking. CONCLUSIONS: That the cells can immediately respond to subtle differences in spatial landmarks is consistent with rapid processing of visual snapshots or scenes; similarities in PoS and RSC responding may be due either to similar computations being performed on the visual inputs, or to rapid sharing of information between these regions. More generally, this two-cue HD cell paradigm may be a useful method for testing rapid spontaneous visual discrimination capabilities in other experimental settings.
BACKGROUND: Visual landmarks are used by head direction (HD) cells to establish and help update the animal's representation of head direction, for use in orientation and navigation. Two cortical regions that are connected to primary visual areas, postsubiculum (PoS) and retrosplenial cortex (RSC), possess HD cells: we investigated whether they differ in how they process visual landmarks. METHODS: We compared PoS and RSC HD cell activity from tetrode-implanted rats exploring an arena in which correct HD orientation required discrimination of two opposing landmarks having high, moderate or low discriminability. RESULTS: RSC HD cells had higher firing rates than PoS HD cells and slightly lower modulation by angular head velocity, and anticipated actual head direction by ~48 ms, indicating that RSC spiking leads PoS spiking. Otherwise, we saw no differences in landmark processing, in that HD cells in both regions showed equal responsiveness to and discrimination of the cues, with cells in both regions having unipolar directional tuning curves and showing better discrimination of the highly discriminable cues. There was a small spatial component to the signal in some cells, consistent with their role in interacting with the place cell navigation system, and there was also slight modulation by running speed. Neither region showed theta modulation of HD cell spiking. CONCLUSIONS: That the cells can immediately respond to subtle differences in spatial landmarks is consistent with rapid processing of visual snapshots or scenes; similarities in PoS and RSC responding may be due either to similar computations being performed on the visual inputs, or to rapid sharing of information between these regions. More generally, this two-cue HD cell paradigm may be a useful method for testing rapid spontaneous visual discrimination capabilities in other experimental settings.
Entities:
Keywords:
Head direction cells; in vivo rodent electrophysiology; landmarks; postsubiculum; retrosplenial cortex; spatial memory; visual discrimination
How the brain forms a representation of external, navigable space is a current area
of intense enquiry because it involves transformation of sensory inputs into
higher-order, more abstract cognitive structures, and thus has wide relevance to
cognition generally. One of the foundations of the place representation is the
‘sense of direction’, supported by a network of brain regions known as the head
direction (HD) system, which uses previously learned visual landmarks to re-orient
when an animal re-enters a familiar environment. This study investigates the neural
basis of this rapid orientation process, which is important for understanding how
perception and memory processes shape the place representation.The HD system in rodents (and probably all vertebrates) contains so-called HD cells,
which fire when the animal faces in a particular direction, regardless of position,
and are close to silent otherwise (Taube et al., 1990a; 1990b). Each cell has its own preferred
firing direction (PFD) in a given environment, and the ensemble of HD cells is
coherent – that is, the cells maintain the same relative PFDs, even if the
orientation of the entire cell population changes from one environment to the next.
Local environmental landmarks – mainly visual – establish the population orientation
when the animal enters an environment, and the signal is updated as the animal moves
around by means of self-motion information such as vestibular, optic flow, motor
efference and proprioceptive cues to movement (Taube, 2007; Yoder et al., 2011). Although HD cells
typically begin firing essentially immediately on entry into a familiar environment
(Jankowski et al.,
2014), the environmental cues are learned, not hard-wired (Taube and Burton, 1995),
which means that some kind of rapid recognition process must take place. How and
where this occurs is not known, but is likely to be in HD regions close to the
visual system.Current evidence suggests that the postsubiculum (PoS) and the retrosplenial cortex
(RSC) have an important role in processing landmark information derived from visual
areas and relaying this input to interconnected areas of the HD cell circuit and the
hippocampal formation (for review, see Yoder et al., 2011). Consistent with this
hypothesis, Goodridge and Taube
(1997) found that tuning curve precision (width of the tuning curve) and
stability of anterior thalamic HD signals were impaired after PoS lesions, and the
cells showed reduced responsiveness to rotations of the landmarks. Yoder et al. (2015)
reported a similar effect on lateral mammillary HD neurons, as did Calton et al. (2003) on CA1
place fields, downstream of the HD signal. Similarly, Clark et al. (2010) found the same effects
on both tuning curve width/stability and landmark control following RSC lesions,
although to a lesser extent. In contrast, lesions of the parietal (Calton et al., 2008) or the
postrhinal (Peck and Taube, 2017) cortex did not impair landmark control of anterior
dorsal thalamus (ADN) HD cells, suggesting that the processing of visual landmark
information is routed via the PoS and the RSC. These studies collectively point to a
likely role for PoS and RSC in passing information about landmarks (or at least
their visual properties) to the subcortical circuits that collate the HD information
and generate a stable signal. It is thus of interest to look for possible
differences in the contributions made by the two regions.It is not known why there should be two separate landmark processing regions, but one
possibility is that they differ in some aspect of their contribution to the
processing of environmental landmarks. We therefore set out to compare the responses
of these neurons during re-orientation in a situation where detailed landmark-cue
processing is required. We recorded HD neurons as rats foraged in a cylinder within
a curtained enclosure (Figure
1(a)). The infinite rotational symmetry of this arrangement (Figure 1(b)) was broken by a
pair of cue cards on the cylinder wall, located opposite each other; the resulting
twofold symmetry of the cue pair (Figure 1(c)) was further broken by making the cards different so that
the environment was now polarised, provided the cues could be discriminated (Figure 1(d)). The
discriminability of the cue card pair varied between high, moderate and low (Figure 1(e)) – in the HIGH
condition, one card was black and one white; in the MOD condition, a black bar was
oriented and/or positioned one way on one card and the other way on the other, and
in the LOW condition, the cards were visually identical (although they may have been
distinguishable by smell; hence discriminability is assumed to be low and not
zero).
Figure 1.
Cue-discrimination setup for recording HD cells in the RSC and PoS of freely
moving rats. (a) Recording environment. Rats foraged for rice in a 50 cm
high by 74 cm diameter cylindrical arena with two cue cards 50 × 50 cm
attached to the inner wall 180° apart. The arena was situated in the centre
of a 260 cm diameter, black circular curtained enclosure. (b)–(d)
Environmental symmetry, and hence HD cell anchoring, varies as a function of
cue perception. (b) If no cues are detected then the environment has
infinite rotational symmetry, and HD orientations might be random. (c) If
the cue pair is detected by the cells but not discriminated, then the
environment has twofold rotational symmetry and an HD cell might fire in
either of two directions, at random. (d) If the cues are both detected and
discriminated, then the environment lacks rotational symmetry (is polarised)
and an HD cell would be able to fire in a constant direction. (e) Cue card
patterns, grouped into discriminability categories (high, moderate and low),
and their corresponding abbreviations. B-W: black–white, V-H:
vertical–horizontal, L-R: left–right, T-B: top–bottom, B-B: black–black and
L-L are both L-shaped. The V-H cards were also sometimes used in
white-on-black configuration.
Cue-discrimination setup for recording HD cells in the RSC and PoS of freely
moving rats. (a) Recording environment. Rats foraged for rice in a 50 cm
high by 74 cm diameter cylindrical arena with two cue cards 50 × 50 cm
attached to the inner wall 180° apart. The arena was situated in the centre
of a 260 cm diameter, black circular curtained enclosure. (b)–(d)
Environmental symmetry, and hence HD cell anchoring, varies as a function of
cue perception. (b) If no cues are detected then the environment has
infinite rotational symmetry, and HD orientations might be random. (c) If
the cue pair is detected by the cells but not discriminated, then the
environment has twofold rotational symmetry and an HD cell might fire in
either of two directions, at random. (d) If the cues are both detected and
discriminated, then the environment lacks rotational symmetry (is polarised)
and an HD cell would be able to fire in a constant direction. (e) Cue card
patterns, grouped into discriminability categories (high, moderate and low),
and their corresponding abbreviations. B-W: black–white, V-H:
vertical–horizontal, L-R: left–right, T-B: top–bottom, B-B: black–black and
L-L are both L-shaped. The V-H cards were also sometimes used in
white-on-black configuration.PoS and RSC HD cells were recorded in sessions ranging from 4 to 12 trials; between
trials, the rat was removed and mildly disoriented, and the entire environment was
frequently also rotated to disconnect it from static external cues. Cells were
tested for basic firing parameters (firing rate, spiking characteristics, and
possible spatial localisation) and to determine whether their firing directions
rotated appropriately with the cue pair, indicating successful detection and
discrimination.
Materials and methods
Subjects
A total of 18 adult male Lister Hooded rats weighing between 317 and 437 g at the
time of surgery were used for the experiments. One PoS rat had received a saline
sham injection into the lateral geniculate nucleus (LGN), as part of a different
study. The rats were housed in individual cages in a temperature and
humidity-controlled colony room that was kept on an 11:11 h light:dark cycle
plus 1 h each of half-light simulated dawn and dusk. All the rats had free
access to food and water prior to surgery and began food restriction to maintain
90% of their free-feeding weight 1 week after surgery. All procedures were
licensed by the UK Home Office following the revised ASPA regulations (2013)
modified by the European Directive 2010/63/EU. Two of the RSC-implanted rats
also took part in another experiment, in a different apparatus (Jacob et al.,
2016).
Electrodes and surgery
Each rat was anesthetised and implanted with a microdrive (Axona) that was
configured with either four or eight tetrodes threaded inside a guide cannula.
Each tetrode was made of individual 90:10 platinum–iridium wires (California
Fine Wire) of diameter 25 µm (for the four-tetrode drives) or 17 µm diameter
(for the eight-tetrode drives). The tips of the electrodes were plated in a 1:9
0.5% gelatine:Kohlrausch platinum solution to approximately 250 kΩ using a pulse
generator (Thurlby Thandar TGP-110) and a current source amplifier (A.M.P.I.
ISO-FLEX) that delivered 2 µA current for 550 ms to each channel. The microdrive
and the guide cannula were fastened to the skull with dental acrylic (Simplex
Rapid) covering seven supporting screws of 1.6 × 3 mm (Small Parts) that were
inserted into the occipital, parietal and frontal cranial bones. One of the
supporting screws made contact with the frontal cortex and was connected to the
microdrive ground wire.Implant coordinates were based on previous studies of HD cells in the RSC (Cho and Sharp, 2001)
and the PoS (Taube et al.,
1990a); for RSC (n = 12 rats; n = 6 left hemisphere, n = 6 right
hemisphere), these were 5.4 mm posterior to bregma, 0.6–0.8 mm lateral to the
midline and 0.2–0.9 mm ventral from the cortical surface, while two sets of
coordinates were used for the PoS (n = 5 rats; all in the left hemisphere);
being, respectively, 6.7 or 7.5 mm posterior to bregma, 2.8 or 3.2 mm lateral to
the midline and 1.6 or 1.9 mm ventral from the cortical surface. After surgery,
the animals were monitored until they awoke, and meloxicam (Metacam) was given
in jelly for three consecutive days as pain relief. All animals were allowed to
recover for 1 week prior to the start of recording.
Cue control apparatus
The cue control experiments were performed inside a cylindrical arena (diameter,
74 cm; height, 50 cm) made of plywood painted with light grey matt acrylic and
placed at the centre of a black curtained enclosure (diameter, 260 cm) (Figure 1(a)). A cylinder
was selected as a recording arena to minimise the influence of the environment’s
geometry as an orienting cue (Golob et al., 2001; Knight et al., 2011).
Attached to the inner wall of the cylinder with Velcro tape were two 50 × 50 cm
cue cards (Figure 1(b))
made from black and/or white polypropylene sheets, each subtending ~77° of arc,
and located 180° apart. Two of the cue pairs were plain – either both black
(identical-cue controls; B-B) or one black and one white (a maximally salient
high-contrast condition; B-W). The remaining cue pairs, with one exception, were
made from white card decorated with a black bar of 14 × 50 cm; these were thus
equal in overall luminance and contrast, so discrimination would require
processing of the cues’ internal structure. The position of the bar in each pair
differed in, respectively, orientation (vertical vs horizontal; V-H cues),
lateral position (left vs right; L-R cues) or vertical position (top vs bottom;
T-B cues). For the exceptional pair, black and white were reversed for the
orientation cues.The arena rested over a black vinyl sheet and was lit from above by six light
fixtures that provided approximately 250 lux of light, with a radio attached to
the ceiling as a source of white noise to reduce the effect of directional
auditory cues.
Screening/recording procedures
Signal processing and tracking
Single units were recorded using a headstage amplifier connected to a
microdrive and connected to the multichannel recording system (DacqUSB,
Axona) via a flexible lightweight tether. Traces from individual channels
were collected at a sampling rate of 48 kHz, amplified 6000–20,000 times and
band-pass filtered from 300 Hz to 7 kHz. The traces from each electrode were
referenced against an electrode from a different tetrode that showed low
spiking activity. Spikes were defined as short-lasting events that crossed a
user-defined threshold; the period from 200 µs before to 800 µs after
threshold-crossing were captured and saved along with the corresponding
timestamps. To track the rat’s head position and facing direction in the
horizontal plane, two arrays of light-emitting diodes (LEDs), one large and
one small, were transversely positioned 8 cm apart on a stalk connected to
the headstage. The LED positions were recorded at a sampling rate of 50 Hz
by a camera attached to the ceiling. Spike times, the rat’s head position in
x- and y-coordinates and its heading in degrees were saved for offline
analysis.
HD cell screening
The screening sessions for single units tuned to HD were conducted inside a
76 × 76 × 50 cm box in a room separate from where the cue control
experiments took place. The animals had visual access to a polarising cue
card placed inside the box, and distal room cues. The screening sessions
consisted of 5–10 min trials during which the rat foraged for rice while
spikes were monitored. Polar plots were generated with spike-sorted data
using the software TINT (Axona) and examined to determine whether single
units were tuned to HD. In screening sessions during which HD cells were not
found, the tetrodes were lowered by ~50 µm and the rat was screened again
4 h later or the next day.
Cue control procedure
After isolating single units tuned to HD during screening, the rat was taken
to the recording room inside a closed opaque box. A cue control session was
conducted using a similar recording procedure as described previously (Knight et al.,
2011). Briefly, each session started with a series of baseline trials
(2–4 trials) where the two cue cards remained aligned in the same location
relative to the room coordinates. This was followed by a series of rotation
trials (4–8 trials) during which the cue cards were rotated together by
±45°, ±90°, ±135° or 180° (Figure 1(c)) to test whether HD cells could discriminate and use
the visual features of the cue cards as orienting landmarks (Figure 1(d)). For each
recording session, the starting location of the cue cards as well as the
magnitude and direction of the cue rotations were pseudo-randomised. The
length of each trial was 300 s and was initiated via remote control after
placing the rat inside the cylinder with a pseudo-random location and facing
direction. Prior to each trial, the cue cards, recording arena and the base
of the cylinder were inverted and wiped with 75% ethanol to scramble
olfactory cues. During the inter-trial interval, the rats remained inside a
holding box outside the curtained enclosure, and then prior to being
replaced in the recording box they were mildly disoriented by being
passively transported and rotated in the holding box around the periphery of
the curtained enclosure, thereby preventing the animals from using
self-motion cues to track their orientation. During the recording trials,
the experimenter remained outside the curtained enclosure, tossing rice into
the arena to encourage the rat to sample all the locations and facing
directions within the cylinder. With the exception of the black–white (B-W)
cue pair, which was used to establish cue control, the order of presentation
for the different cue card stimuli was pseudo-randomised between rats to
prevent temporal effects due to the changing experience of the animal across
days.For one rat, a control procedure was conducted to assess the relative
contribution of vision and olfaction to the landmark discrimination. Using
the patterned cues that had rotational symmetry (V-H, T-B and L-R), the
visual identity of the cards was reversed by rotating around their central
points, 90° for V-H and 180° for T-B and L-R, to determine whether firing
remained aligned relative to the physical cards or to the visual
appearance.
Data analysis
Spike-sorting was performed using KlustaKwik (Kadir et al., 2014) followed by manual
refinement using the TINT software package (Axona). Polar plots were generated,
and cells that showed directional firing by eye were selected for further
quantitative analysis, which included extracting peak firing rate and
directional clustering – Rayleigh vector (R-vector) – scores. Cells that were
recorded on the same tetrode across sessions were treated as unique if more than
5 days separated the sessions. For each trial, a cell was accepted into further
analysis if it had a peak firing rate >1.0 Hz across sessions, a peak:mean
rate ratio > 2 and a R-vector p-value <0.05. Cells were excluded
altogether if only three trials or fewer per session remained after
selection.Data were grouped in three ways: (a) Those pertaining to cell-specific
characteristics, such as firing rate, R-vector score and tuning curve width were
averaged across a given session. (b) Data concerning trial-specific
characteristics such as firing direction relative to the cue card array were
averaged across a given cell. (c) Data concerning session-specific
characteristics, such as the spread of firing directions, were averaged across a
session.The basic protocol for firing direction analysis is shown in Figure 2. First, a tuning curve was
derived (see below). Each tuning curve was recorded in the camera frame of
reference, within which the cues rotated, but it was necessary to align these
within a common reference frame so that population statistics could be derived.
To do this, the tuning curves were first specified relative to one of the two
cues (‘Cue 1’; Figure
2(b)) and the mean firing direction across the session computed.
Then, the tuning curves were realigned relative to this mean; this value
(deviation from the session mean) became the value that entered into the
population analysis. Finally, the angles were doubled in order to remove any
bipolarity that might be present due to cue confusion – this was done so as to
enable determination of cue use independently of cue discrimination.
Figure 2.
Tuning curve analysis. (a) Example of the tuning curve derived from a
single PoS HD neuron in a series of recording trials, selected from a
12-trial session. The plots show firing rate as a function of HD,
normalised to the peak rate (shown). (b) Schematic from a hypothetical
set of trials showing how data were transformed into a common reference
frame to allow population comparisons. The original reference frame was
that of the room-fixed camera: the top row shows an idealised trial in
which the cell consistently rotated its firing with the cue pair, but
was aligned relative to Cue 1 on trials 1, 2 and 5 and 180° away from it
on trials 3 and 4. The bottom row shows these data expressed in the
different reference frames: in the camera frame, the firing direction is
scattered; relative to Cue 1, it is bipolar with three trials in one
direction and two in the opposing direction; relative to the session
mean (arrow), the bulk of the firing is now aligned to zero, and after
angle-doubling the bipolar distribution is now transformed to
unipolar.
Tuning curve analysis. (a) Example of the tuning curve derived from a
single PoS HD neuron in a series of recording trials, selected from a
12-trial session. The plots show firing rate as a function of HD,
normalised to the peak rate (shown). (b) Schematic from a hypothetical
set of trials showing how data were transformed into a common reference
frame to allow population comparisons. The original reference frame was
that of the room-fixed camera: the top row shows an idealised trial in
which the cell consistently rotated its firing with the cue pair, but
was aligned relative to Cue 1 on trials 1, 2 and 5 and 180° away from it
on trials 3 and 4. The bottom row shows these data expressed in the
different reference frames: in the camera frame, the firing direction is
scattered; relative to Cue 1, it is bipolar with three trials in one
direction and two in the opposing direction; relative to the session
mean (arrow), the bulk of the firing is now aligned to zero, and after
angle-doubling the bipolar distribution is now transformed to
unipolar.
Cell-specific firing characteristics
Data were analysed using MATLAB (MathWorks) with custom-made programs and
functions taken from the CircStat toolbox (Berens, 2009). To analyse the firing
characteristics of single units, the spike times and position samples of the
rat’s facing direction were sorted into bins of 6°. The mean firing rate per HD
bin (Hz) was calculated by taking the sum of the spikes divided by the total
amount of time (s) that the rat’s facing direction was located in each bin. A
5-bin (30°) smoothing kernel was applied to the circular histogram of the firing
rate as a function of HD to minimise random influences to the firing rate in
each cell (Abeles,
1982). Polar plots of the smoothed histograms were generated to
visualise the cell’s tuning curve (Figure 2(a)).The parameters that were used to quantify the tuning curve characteristics for
each cell were firing rate, PFD, tuning width, and mean R-vector length. The
firing rate of the HD cell was defined as the bin with the maximum firing rate;
that is, the mode of the circular histogram, and the PFD defined to be the
directional bin of the mode. The tuning width, or directional firing range of
the cell, was determined by computing two standard deviations from the circular
mean direction. The R-vector score was used as a measure of the directional
tuning in each cell. Values of R close to 1 indicate that the spikes are closely
clustered around a single value and values close to 0 indicate that the spikes
were distributed around all facing directions.To examine how a cell behaved in relation to the cue card pair across trials, the
PFDs were realigned according to their relationship to one of the two cues
(arbitrarily called ‘Cue 1’) and the circular mean of the session values was
computed. Each PFD was then expressed as a deviation from this mean.In some cases, it was necessary to test whether a low R-vector score could be due
to bipolarity of the firing distribution. To do this, the values were doubled
and plotted modulo 360 – this has the effect of wrapping the 180° points around
to zero, thus rendering a bipolar distribution unipolar for the purposes of
analysis.
Test for bipolar tuning curves
In order to test whether there was any within-trial tendency towards
bipolarity, due to (perhaps) intermittent reversing of the tuning curve
arising from confusion between the cues, a test for bipolarity was conducted
by running a circular autocorrelation on the smoothed binned data from each
trial, using the MATLAB circshift and corr functions. From the
autocorrelation, the values at 90° and 270° relative to the peak were
extracted and averaged, and compared with the peak at 180° using a
one-tailed t-test of the hypothesis that the 180° peak would be larger.
Spatial firing patterns
In order to determine whether there was any spatial specificity to the
firing, which could be of computational utility (Bicanski and Burgess, 2016), and has
been reported for some types of HD cells in cortical regions (Cacucci et al.,
2004; Peyrache et al., 2016), we examined the spatial distribution of
spikes in the same way as is usually done for place cells, extracting the
spatial information content of the firing, the coverage relative to the
whole environment and the coherence of the firing distribution. Path data
were extracted by smoothing the position points with a 400 ms window and
first plotting the spikes at their corresponding locations, for visual
inspection. These data were then used to generate dwell-time-normalised
firing rate maps by binning the spike and position data into 3 cm bins and
dividing the firing rate by dwell time, and then smoothing the map with a
boxcar of three spatial bins (whereby the value in each bin was replaced by
the average for that bin plus the surrounding eight bins). To eliminate
sampling bias due to the rat’s inability to face all directions everywhere
in the arena, we undertook the spatial analysis using only the inner 50% of
the arena, in which directional sampling was homogeneous. In case some cells
might have place fields near the edge of the arena, we also analysed the
hemi-cylinder lying in the direction of the cell’s PFD, for which the
directional bias was much reduced (since it was easy for the rat to face in
the cell’s PFD in this region); this made little difference, so we chose the
inner region as being the most conservative measure.Spatial information in bits/spike was computed following the method of Skaggs et al.
(1993). Coverage was calculated as the percentage bins above 20%
peak rate, and coherence of spatial firing was determined using a Pearson’s
correlation between the smoothed and unsmoothed rate maps. Actual data were
compared against a control dataset generated by taking the spike data and
shifting it forwards by 1000 position points (20 s), which would scramble
any spatial specificity of firing while leaving the temporal dynamics
unchanged. Each firing rate map was compared with its shuffled control map
using a paired t-test.
Temporal firing patterns
We looked at temporal patterns of firing including inter-spike interval (ISI)
time to peak and decay time to half-peak, as well as theta-frequency
rhythmicity. For the ISI analysis, only trials with >145 spikes were used
and only one trial (usually the first) was used from each cell. A histogram
of ISIs with 2 ms bins was generated for each cell and the peak was taken as
the centre of the bin with the highest count. We calculated decay time by
fitting, to the histogram, a one-term exponential decay function of the form
from the peak to peak + 1 s, using the fit function from
MATLAB’s Curve Fitting toolbox. Time to half-peak was then taken as the time
taken for the exponential fit to decay to half the peak value.We measured theta modulation by plotting autocorrelograms of the spike trains
over the range ±500 ms, in bins of 10 ms duration. The plots were then
highly smoothed (20 bins) to remove local variations, and the values at the
7th bin from the central peak (expected trough at 60–70 ms) and the 12th bin
(expected peak at 120–130 ms) determined: the theta modulation index was
taken as the difference between these values divided by their sum. If there
is significant theta modulation, then the 12th bin should be a peak and the
7th bin a trough, yielding a positive modulation index varying from 0 to 1.
Conversely, values below zero would indicate a descending likelihood of a
cell spiking with time between the first and second time-points.
Movement correlates
The relationship between linear or angular speed and firing rate was examined
by analysing those portions of the trial when the animal’s HD was within 45°
either side of the PFD of the cell, and correlating the firing rate with
movement speed. Correlations of firing rate with linear running speed and
angular head velocity (AHV) were computed as percentage firing rate change
as a function of movement speed, to compensate for variability in firing
rate between cells. Running speeds below 2 cm/s were excluded from running
speed analysis. Linear running speed was binned in intervals of 2 cm/s, and
AHV was binned in intervals of 2°/s. The firing rate was calculated by
counting the spikes in each bin and dividing by the time spent in that bin
(dwell time) and then normalised to the peak for that trial to enable
comparison across trials/cells. Bins with dwell times of less than 1.5%
total trial time or with fewer than five spikes were discarded; a linear
regression was run on the remainder to generate a slope value. Because dwell
time decreased with increasing velocity, which might cause artefacts in the
rate/speed relationship, the baseline for each trial was calculated by
generating an artificial continuous 10 Hz spike train, analysing it in the
same way and subtracting this control slope from the raw data slope. For
AHV, left and right turns were analysed separately and the absolute slope
values then combined for that cell. This is because previous recordings from
other brain regions have found cells with asymmetric AHV rate profiles
(Bassett and Taube,
2001), being negative in one direction and positive in the other,
which would cancel if the raw values were taken. The resulting difference
values were entered into a t-test comparing PoS and RSC.Anticipatory time intervals (ATIs) were estimated using a time slide analysis
in the manner of Blair
and Sharp (1995). Given the camera sample rate of 50 Hz, spike
times were shifted forwards in 20 ms intervals from 20 to 160 ms. For each
head turn, a tuning curve was constructed for leftwards and rightwards head
turns in the manner described. A population vector method was used to
calculate the PFD of each tuning curve (Song and Wang, 2005) aswhere r is the firing rate in bin
i of N with mean bin direction
x, and arctan denotes quadrant-specific
arctangent function.The difference between PFD for leftwards and rightwards tuning curves was
plotted, and a line was fitted to it using the MATLAB function polyfit. To
allow for estimations of ATIs at a finer scale than measurement, the ATI was
taken as the value of this fitted line when PFD difference was equal to
zero, extracted using the MATLAB function polyval.
Stabilisation analysis
To investigate the time course of cue control establishment, we looked at firing
within the PFD range (PFD ±20°) across the trial, taking both the percentage of
total spikes emitted in each time decile (30 s – trials were 300 s long), and
the time taken to reach each spike count decile.
Histology
After completion of the electrophysiological recordings, the rats were
anaesthetised and killed with an overdose of sodium pentobarbital Euthatal,
150 mg/kg and perfused transcardially with saline followed by 4% formalin
solution. A day before sectioning, the brains were placed in 4% formalin/20%
sucrose solution for cryoprotection. Coronal or sagittal sections of the
brains were cut in 40 µm sections using a microtome at −20° C and mounted on
microscopic slides (Superfrost BDH). The brain sections were Nissl stained
with 0.1% cresyl violet (Sigma-Aldrich) or 0.5% thionin (Sigma-Aldrich) and
cover-slipped with DPX (Sigma-Aldrich). The slides were examined under a
light microscope (Leica) and imaged with a digital camera mounted on the
microscope. Images with visible electrode tracks were saved for histological
analysis. The electrode location was verified by examining the brain region
where the final electrode track was located and then relating the location
to a standard rat atlas of the regions (Paxinos and Watson, 2007).
Results
Representative example sections showing the final tetrode placement of rats implanted
in the PoS and the RSC are shown in Supplementary Figure 1. A total of 149 unique cells meeting the
criteria for HD cells (see section ‘Methods’) were recorded from 18 rats in 78
sessions, of which 74 cells were recorded from 6 rats implanted in the PoS over 34
sessions, and 75 cells from 12 rats implanted in the RSC over 44 sessions. We
observed that a greater proportion of RSC HD cells (73%) were found below 1500 µm
which is likely in the deeper granular region. However, although the implant target
coordinates were the same for all rats, there was a degree of variability in the
actual anterior-posterior and medio-lateral coordinates in which the tetrodes were
implanted (Supplementary Figure 1). Furthermore, the tetrodes did not cover all
the layers of the granular RSC as illustrated by the final tetrode depth, which
could have under-estimated the actual number of HD cells.Results and statistics are detailed below and summarised in Table 1.
Table 1.
Basic firing statistics compared between PoS and RSC HD cells.
PoS (n = 74)
RSC (n = 75)
F/T statistic (dof)
p value
Peak rate (Hz)
8.14 ± 0.63
22.40 ± 2.58
t(147) = 5.34
3.48 × 10−7
Mean rate (Hz)
1.83 ± 0.19
5.07 ± 0.52
t(147) = 5.86
2.92 × 10−8
Tuning curve width (°)
43.65 ± 1.13
49.29 ± 1.28
t(147) = 3.31
1.18 × 10−5
Tuning curve R-vector
0.59 ± 0.02
0.53 ± 0.02
t(147) = 1.53
0.13
Spatial information (data: control bits/spike ratio)
1.63 ± 0.06
2.22 ± 0.10
t(145) = 5.00
7.00 × 10−7
Coverage (data: control % ratio)
0.98 ± 0.01
1.48 ± 0.04
t(145) = 3.67
1.70 × 10−4
ISI rise time to peak (ms)
13.5 ± 1.6
7.5 ± 0.4
t(144) = 3.74
2.66 × 10−4
ISI decay time to half-peak (ms)
80.1 ± 6.5
48.8 ± 5.8
t(144) = 3.61
4.20 × 10−4
Theta modulation index
−0.05 ± 0.03
−0.03 ± 0.00
t(148) = 2.64
0.009
Abs. slope of firing rate correlation with linear
running speed (%/m/s) vs 10 Hz control
0.69 ± 0.1 vs 0.06 ± 0.001
0.6 ± 0.1 vs 0.07 ± 0.01
Data vs 10 Hz controlF(1, 1) = 40.10
< 0.0001
PoS vs RSCF(1, 1) = 0.50
0.50
InteractionF(1, 64) = 0.30
0.56
Abs. slope of firing rate correlation with angular
head velocity (%/°/s) vs 10 Hz control
N’s differ slightly because some of the data trials could not be
curve-fitted.
Basic firing statistics compared between PoS and RSC HD cells.PoS: postsubiculum; RSC: retrosplenial cortex; dof: degrees of freedom:
ISI: inter-spike interval.N’s differ slightly because some of the data trials could not be
curve-fitted.
Cell-specific firing parameters
As described in section ‘Methods’, the cell-specific characteristics of peak and
mean firing rate, R-vector score and tuning curve width were calculated for each
trial and then averaged across a given session for each cell. Statistical
parameters are summarised in Table 1 and graphically shown in
Supplementary Figure 2(A). Peak firing rates were significantly
higher in RSC, being 8.14 ± 0.63 Hz in PoS and 22.40 ± 2.58 Hz in RSC
(t(147) = 5.34, p = 3.48 × 10−7). Similarly, mean firing rates were
higher in RSC: 1.83 ± 0.19 in PoS and 5.07 ± 0.52 in RSC (t(147) = 5.86,
p = 2.92 × 10−8). Tuning curves were narrower in PoS, being
43.65° ± 1.13° in PoS and 49.29° ± 1.28° in RSC (t(147) 3.31,
p = 1.18 × 10−5). However, directional tuning was similar in both
structures: there was no difference in R-vector score, being 0.59 ± 0.02 in PoS
and 0.53 ± 0.02 in RSC (t(147) = 1.53, p = 0.13).
Spatial firing
Visual inspection of the firing rate maps revealed mostly uniform firing,
although there were sometimes patches of inhomogeneous firing at a single-trial
level and occasional clear place fields of the kind seen in hippocampal
recordings (Supplementary Figure 3). We quantified spatial modulation by
considering spatial information content, coverage and coherence. As detailed in
section ‘Methods’, only the central 50% (by radius) of the arena was used in
order to remove bias induced by inhomogeneous directional sampling around the
arena edges.Both PoS and RSC HD neurons showed evidence of a spatial component to their
firing, revealed by higher spatial information content, lower coverage and by
higher coherence relative to the time-shifted control data (Supplementary Figure 2(b)). Spatial information content (bits
per spike) for the PoS data was 0.23 ± 0.02, while for the control data it was
0.16 ± 0.01, which was significantly different, as revealed by a paired
one-tailed t-test (t(73) = 11.57, p = 9.72 × 10−18). Corresponding
values for the RSC data were 0.15 ± 0.01 and for the control data were
0.07 ± 0.00, which was significantly different (t(73) = 11.16,
p = 1.13 × 10−17). Coverage was slightly less for both cell types
in the real data; PoS coverage in the real data condition was 52 ± 3%, and in
the time-shifted control condition was 53 ± 3% which was significantly greater
(paired one-tailed t(72) = 4.14, p = 4.70 × 10−5). For RSC, coverage
for the data was 62 ± 2% and for the control data was 64 ± 2%, which was also
significantly higher (t(73) = 3.58, p = 3.1 × 10−4). Coherence values
were greater for the data compared with the time-shifted control data. For the
PoS data were 0.24 ± 0.01 and for the time-shifted control data were
0.20 ± 0.01, which was significantly lower (t(70) = 6.38,
p = 8.4 × 10−9), while for RSC the real data had a coherence
value of 0.27 ± 0.01 and the control data had a coherence of 0.19 ± 0.00, which
was again significantly lower (t(73) = 12.01, p = 2.89 × 10−19).We then compared spatial firing bias between PoS and RSC by computing the ratio
of data to control values for each session and then comparing between cell types
for each of the three spatial parameters. For spatial information, the ratio of
data: control was 1.63 ± 0.06 for PoS and 2.22 ± 0.10 for RSC, which was
significantly different (t(145) = 5.0, p = 7 × 10−7, d = 0.83). For
coverage, the ratio for PoS was 0.98 ± .01 and for RSC was 0.99 ± .01, which did
not differ (t(145) = 0.67, p = 0.25). For coherence, the ratio for PoS was
1.26 ± 0.04, and for RSC it was 1.48 ± 0.04, which was significantly different
(t(145) = 3.67, p = 1.7 × 10−4, d = 0.61).Overall, then, both PoS and RSC HD neurons showed a small amount of spatiality to
their firing when compared with a time-shifted version of the same data, having
higher spatial information and spatial coherence; this was more pronounced in
RSC. This accords with the visual inspection showing occasional and reproducible
spatial inhomogeneity of firing. It thus appears that there is a degree of
spatial modulation of firing, but this was rather slight. For RSC, this is
surprising given previous reports of conjunctive spatial and directional firing
in this structure (Cho and
Sharp, 2001). However, it is consistent with our previous studies of
RSC HD cells, in which we have observed very little clear spatial firing (Jacob et al., 2016;
Knight et al.,
2014).
Temporal components of firing
To analyse temporal patterns of spiking, we took one trial (usually the first)
for each cell and used the ISI histogram (Supplementary Figure 4) to determine the typical time between
spikes (ISI peak) and spread of firing intervals (decay time to half-peak; Table 1). Consistent
with our observations of higher firing rates in RSC, the time to the ISI peak
was considerably longer in PoS (13.5 ± 1.6 ms) than in RSC (7.5 ± 0.4 ms), these
being significantly different (t(144) = 3.74, p = 2.66 × 10−4). The
time to return to the half-peak, which can be thought of as a measure of the
prevalence of longer ISIs, was also different, being 80.1 ± 6.5 ms for PoS and
48.8 ± 5.8 ms for RSC (t(144) = 3.61, p = 4.2 × 10−4).For each cell, autocorrelograms were generated for each trial in a session
(Supplementary Figure 5(A)) and from these, a theta modulation
index was calculated (see section ‘Methods’). Visual inspection of the
autocorrelograms revealed no evidence of theta modulation, although there were
frequently peaks and troughs suggestive of slightly longer scale periodicity
(see examples from the cell shown in the Supplementary Figure 5(A)). However, these patterns did not
persist across trials and are likely due to the dynamics of the animal’s
movements. For example, if a rat is foraging by sweeping its head back and
forth, then a cell’s tuning curve will be visited and re-visited over a regular
time period of up to several seconds. It may be that rats varied their movement
patterns across trials.The quantitative theta modulation index confirmed the visual impression: in
general, values were, if anything, negative (a lower value at the expected peak
than at the expected trough) and slightly more so, and more dispersed, for PoS
(Supplementary Figure 5(B)). The values for PoS were
−0.049 ± 0.006 and for RSC were −0.032 ± 0.002 (t(148) = 2.63, p = 0.005).
Movement correlates
Correlations of firing rate with linear running speed and AHV were computed as
described in section ‘Methods’, yielding percentage firing rate change as a
function of movement speed. For linear running speed, there was a weak
correlation of firing rate with running speed relative to the control 10 Hz
spike train; this was 0.69 ± 0.1%/m/s for PoS and 0.61 ± 0.1%/m/s for RSC. A
two-way analysis of variance (ANOVA) of data type (real vs 10 Hz control) and
brain area found a main effect of data (F(1, 1) = 40.1, p < 0.0001), but no
effect of brain area (F(1, 1) = 0.50, p = 0.5) and no interaction (F(1,
64) = 0.30, p = 0.56).For AHV, there was also overall a very weak relationship with firing rate
relative to the control steady 10 Hz spike train; this was 0.12 ± 0.01%/°/s for
PoS and 0.08 ± 0.01%/°/s for RSC. These effects, though small, were significant:
a two-way ANOVA comparing data versus control slopes for PoS and RSC found a
main effect of data type (F(1, 1) = 9.70, p = 0.003), a main effect of brain
area (F(1, 1) 5.00, p = 0.03) and a significant interaction (F(1, 64) = 4.20,
p = 0.025). Plots of firing rate against HD and AHV (Figure 3) revealed an additional
difference between PoS and RSC neurons. An example of each (the closest cell to
the mean in each case) is shown in Figure 3(a), where it can be seen that
the cell’s directional tuning deviates as a function of AHV, with greater
deviation for higher AHVs in the RSC but not the PoS neuron. This deviation
reflects anticipatory firing, first reported by Sharp and colleagues for
anterior thalamic HD neurons but not PoS (Blair et al., 1997; Blair and Sharp, 1995)
and replicated by Taube and
Muller (1998); anticipatory firing was subsequently shown to a lesser
extent for RSC HD neurons (Cho and Sharp, 2001). It is determined here by taking the slope of
the AHV/PFD relationship. Comparing PoS and RSC neurons (Figure 3(b)), we found that, as in
previous studies, RSC neurons showed a greater ATI (47.91 ± 4.28 ms) than did
PoS neurons (14.37 ± 8.19 ms); these were significantly different (one-tailed
t(147) = 3.62, p = 0.0002). The PoS values did not differ from zero
(t(74) = 1.75, p = 0.0836).
Figure 3.
Modulation of HD cell firing by angular head velocity (AHV). (a) The heat
plots show firing rate (colour; max = red) as a function of HD (y-axis)
and AHV (x-axis) for a PoS and RSC neuron. Tuning curves collapsed
across all AHVs for left and right head turns are shown to the left and
right sides, respectively. Firing rate collapsed across HD as a function
AHV is shown below each plot (means and standard error of the mean (SEM)
of the shuffled control shown in blue). The left–right downwards slope
evident in the RSC plot reveals anticipatory firing, in which the tuning
curve shifts in the positive direction (right) for left head turns and
in the other direction for right head turns. The shift increased
linearly with AHV, revealing a constant time lag. (b) Overall,
anticipatory firing differed between PoS and RSC (dotted line shows
mean).
Modulation of HD cell firing by angular head velocity (AHV). (a) The heat
plots show firing rate (colour; max = red) as a function of HD (y-axis)
and AHV (x-axis) for a PoS and RSC neuron. Tuning curves collapsed
across all AHVs for left and right head turns are shown to the left and
right sides, respectively. Firing rate collapsed across HD as a function
AHV is shown below each plot (means and standard error of the mean (SEM)
of the shuffled control shown in blue). The left–right downwards slope
evident in the RSC plot reveals anticipatory firing, in which the tuning
curve shifts in the positive direction (right) for left head turns and
in the other direction for right head turns. The shift increased
linearly with AHV, revealing a constant time lag. (b) Overall,
anticipatory firing differed between PoS and RSC (dotted line shows
mean).
Cue control
The next set of analyses investigated ensemble behaviour and aimed to determine the
extent to which the cells were controlled by the visual cues: for these analyses,
behaviour of the individual co-recorded cells in a trial was averaged to yield an
overall value.
Overall cue control
We first looked at whether there was overall cue control by the cue pair,
irrespective of the visual stimuli feature, and whether this would differ for
brain region or cue type. As described in section ‘Methods’ (Figure 2), the firing
directions for each trial in a session were extracted and re-oriented relative
to the session mean, so as to express them all in the same reference frame.
Then, because visual inspection suggested that firing directions were sometimes
distributed in a bipolar fashion, we doubled the angles modulo 360 and
re-computed the firing directions; this has the effect of wrapping points at
180° around to 0/360°, and rendering a bipolar distribution unipolar. The
angle-doubled data were compared against a control, shuffled dataset in which
the PFD for each trial was randomly generated; this procedure was repeated until
1000 such pseudo-sessions had been obtained.Overall, the 2140 cells × trials (149 cells in multiple trials) comprised 221
cells × sessions, which collapsed (after averaging across cells) to 113
sessions, of which 41 were from PoS and 72 from RSC. Overall, the number of
cells recorded in each cue condition were 48, 166 and 17 for HIGH, MOD and LOW
cues, respectively. The shuffle control procedure yielded R-vector scores of
0.31 ± 0.01 for both single and doubled values, so this was used as the
threshold against which to statistically evaluate cue control.The population of all firing directions before and after angle-doubling are shown
in Figure 4(a). R-vector
scores showed a marked increase after angle-doubling, from 0.56 to 0.74,
indicating a degree of bipolarity in the original firing directions, therefore
to evaluate overall cue control as a function of brain area, the angle-doubled
values were used. Overall, the angle-doubled R-vector scores far exceeded the
shuffled control threshold (t(112) = 23.00, p < 0.0001), indicating a high
degree of cue-following. Average per-session R-vector scores for PoS were
0.73 ± 0.04 and for RSC were 0.79 ± 0.02; these values did not differ
(two-tailed t(111) = 1.42, p = 0.16), indicating no difference between brain
areas in the overall level of cue control (Figure 4(b)).
Figure 4.
Overall cue control. The circular dot plots show the raw cell data,
expressed relative to session means (0°); the histograms below these
show the same data binned in 6° bins, linearised (centred on 0°) and
expressed as a proportion of the total cell count in order to enable
easier visual comparison between the cue types. (a) Angle-singled or
doubled mean firing directions relative to the cue pair, for the
individual trials. For the original angles, each cell’s preferred firing
direction (PFD) was computed relative to Cue 1, and mean values computed
for each session, each PFD was then realigned to this session mean (0°).
For the doubled angles, the PFD value relative to the cue was doubled,
modulo 360°, so as to wrap values near 180° around to zero and thus
remove the bimodality. (b) The doubled-angled values compared between
PoS and RSC for all trials. Statistics reported in the text were
calculated using the session means rather than the set of individual
trials.
Overall cue control. The circular dot plots show the raw cell data,
expressed relative to session means (0°); the histograms below these
show the same data binned in 6° bins, linearised (centred on 0°) and
expressed as a proportion of the total cell count in order to enable
easier visual comparison between the cue types. (a) Angle-singled or
doubled mean firing directions relative to the cue pair, for the
individual trials. For the original angles, each cell’s preferred firing
direction (PFD) was computed relative to Cue 1, and mean values computed
for each session, each PFD was then realigned to this session mean (0°).
For the doubled angles, the PFD value relative to the cue was doubled,
modulo 360°, so as to wrap values near 180° around to zero and thus
remove the bimodality. (b) The doubled-angled values compared between
PoS and RSC for all trials. Statistics reported in the text were
calculated using the session means rather than the set of individual
trials.
Cue discrimination
We next looked at cue discrimination as a function of cue type, first using the
original non-doubled angles. If the cells were confusing cues, then the firing
should be bipolar and the R-vector scores low. Indeed, firing directions (Figure 5) were more
clustered for the more discriminable cues. R-vector scores were much higher for
the HIGH cues (0.73 ± 0.05) than for the MOD cues (0.55 ± 0.03) or the LOW cues
(0.27 ± 0.08). Unbalanced one-way ANOVA found this difference to be highly
significant (F(2, 110) = 8.0, p = 0.0006), and post hoc testing (Tukey’s honest
significant difference (HSD)) found that the HIGH cues had significantly higher
R-vector scores than both the MOD cues (t(101) = 2.18, p = 0.03) and the LOW
cues (t(23) = 6.58, p = 0.0001), while the MOD and LOW cues also differed
(t(96) = 2.90, p = 0.005).
Figure 5.
Comparison of responding to the three categories of visual cues. Dot
plots and histograms are generated as for Figure 4. (a) Examples of eight
recording trials from three HD cells, one from each cue condition,
showing the relationship of firing direction (polar plot) to the index
cue (black dot). Peak firing in Hz is shown below each plot. The first
two cells are from RSC, the last from PoS. The cell in the HIGH
discriminability condition showed much less variability, as was typical.
(b) and (c) Population data. PoS and RSC data have been combined. (b)
The original angles; (c) the doubled angles, showing increased
dispersion for the highly discriminable cues (HIGH) but decreased
dispersion for the MOD and LOW cues, indicating that their original
firing directions had a degree of bipolarity. See text for statistical
comparisons.
Comparison of responding to the three categories of visual cues. Dot
plots and histograms are generated as for Figure 4. (a) Examples of eight
recording trials from three HD cells, one from each cue condition,
showing the relationship of firing direction (polar plot) to the index
cue (black dot). Peak firing in Hz is shown below each plot. The first
two cells are from RSC, the last from PoS. The cell in the HIGH
discriminability condition showed much less variability, as was typical.
(b) and (c) Population data. PoS and RSC data have been combined. (b)
The original angles; (c) the doubled angles, showing increased
dispersion for the highly discriminable cues (HIGH) but decreased
dispersion for the MOD and LOW cues, indicating that their original
firing directions had a degree of bipolarity. See text for statistical
comparisons.In order to determine whether the differences might be due to differential
confusion between cues, we repeated the analysis using the angle-doubled values
to remove bipolarity. R-vector scores for the HIGH cues were 0.62 ± 0.06, for
the MOD cues were 0.79 ± 0.04 and for the LOW cues were 0.77 ± 0.23. ANOVA
showed that scores for the HIGH cues were now significantly lower than for the
MOD cues (t(101) = 3.01, p = 0.003) and not different for the LOW cues
(t(23) = 1.63, p = 0.12); nor did the MOD and LOW cues differ (t(96) = 0.36,
p = 0.72). Thus, the superior single-angle R-vector scores of the HIGH cues can
be attributed to the more bipolar distribution of the MOD and LOW cues.To compare between brain regions, we then looked in more detail at responses to
the MOD cues, as these were the ones that were in principle discriminable but in
practice evoked some confusion, suggesting maximal demand on landmark
discrimination processing. However, we found no difference. The overall single-
and doubled-angle data for all the MOD trials are shown in Figure 6, as a function of brain area.
Comparison of the three cue types (R-L, T-B and V-H) yielded no differences in
resulting R-vector score (F(2, 85) = 0.90, p = 0.39) so the data were analysed
together. Basic single-angled R-vector scores for the two brain areas did not
differ (PoS = 0.57 ± 0.05, RSC = 0.55 ± 0.04, t(85) = 0.23, p = 0.82).
Similarly, although the doubled-angle scores significantly improved overall,
from 0.55 ± 0.03 to 0.79 ± 0.02 (one-tailed paired t(87) = 7.13,
p = 1.37 × 10−10), the doubled-angle Rayleigh scores were not
different (t(85) = 0.33, p = 0.74). Thus, there was no difference in the degree
of cue control versus cue confusion between brain areas.
Figure 6.
Comparison of responding to the MOD cues. Preferred firing directions
were derived and plotted, together with R-vector score and normalised
histograms, as for Figure 5. There was an improvement in score with the
doubled-angle values, indicating a degree of cue confusion, but no
difference in cue control between PoS and RSC (see text for
details).
Comparison of responding to the MOD cues. Preferred firing directions
were derived and plotted, together with R-vector score and normalised
histograms, as for Figure 5. There was an improvement in score with the
doubled-angle values, indicating a degree of cue confusion, but no
difference in cue control between PoS and RSC (see text for
details).
Comparison of visual and non-visual contributions to cue
discrimination
For five recording sessions (48 trials) from one rat (the sham LGN-lesioned one),
a test was made to see whether the discrimination was purely based on visual
pattern, or whether there might have been a contribution from the
olfactory/tactile components of the cue cards. This was done using the V-H and
T-B cue cards, which could be reversed in visual identity (V to H, or T to B,
and vice versa) by rotating them around their centre points (90° to make V
become H, and 180° to make T become B). Data were then analysed with firing
aligned in the visual-cue reference frame (where Cue 1 was the V or T cue,
irrespective of physical card identity) or in the physical reference frame
(where Cue 1 is the same card across trials, regardless of its orientation). The
alignment of PFDs is shown in Figure 7. In both reference frames there was a degree of bipolarity,
indicating that the PFD sometimes followed the secondary cue in a given
reference frame, but cue control was stronger in the visual reference frame
(R-vector of 0.54) than in the physical one (R = 0.30). When R-vectors were
compared across sessions, there was a decline in the score when the visual-frame
data were compared with the physical-frame data (visual = 0.54 ± 0.05;
physical = 0.31 ± 0.08). This difference only just reached statistical
significance (t(4) = 2.2, one-tailed p = 0.046), but the improvement from single
to double-angle R-scores hints at a contribution from both sensory modalities,
with visual being slightly stronger.
Figure 7.
Reversal of firing provoked by visual change alone. Data from a rat in
which cues were changed in visual identity independently of their
physical identity, by rotating the cue cards so that a vertical bar
became horizontal or a top bar became bottom, etc. When activity was
aligned relative to the visual cue, activity was clustered, but slightly
bipolar. When aligned to the physical cue identity, firing was more
dispersed. When angles were doubled to remove bipolarity (which has the
same final effect for both reference frames), the data were highly
clustered around zero, indicating overall good control by the cue pair.
See text for session statistics.
Reversal of firing provoked by visual change alone. Data from a rat in
which cues were changed in visual identity independently of their
physical identity, by rotating the cue cards so that a vertical bar
became horizontal or a top bar became bottom, etc. When activity was
aligned relative to the visual cue, activity was clustered, but slightly
bipolar. When aligned to the physical cue identity, firing was more
dispersed. When angles were doubled to remove bipolarity (which has the
same final effect for both reference frames), the data were highly
clustered around zero, indicating overall good control by the cue pair.
See text for session statistics.
RSC and PoS HD cells produced unipolar tuning curves even when the landmarks were
identical
No evidence of bipolar tuning curves was seen by visual inspection. However, to check
quantitatively, an autocorrelation was run on the data (see section ‘Methods’) in
order to determine whether there was a secondary peak at 180° due to periodic
reversal of the tuning curve arising from cue confusion. Session data were combined
into a single dataset for a given cell, and the autocorrelation peaks extracted.
Identical-cue trials were analysed separately because there were too few of them: a
two-way ANOVA of the remaining conditions found no significant differences, either
as a function of cue type (F(4, 48 = 0.26, p = 0.90), autocorrelation peak (F(1,
12) = 0.59, p = 0.46) or interaction (F(4, 48 = 0.11, p = 0.36). A paired t-test on
the identical-cue condition, where bipolarity might have been strongest if it
occurred, was also non-significant (t(12) = 1.54, p = 0.07). Thus, there was no hint
of bipolarity in the tuning curves within a single trial.
Stabilisation of PFD across a trial
The time course of the establishment of firing direction was computed using a
stabilisation analysis (see section ‘Methods’), looking at either percentage of
total spikes emitted in each 30-s time decile, or time taken to achieve each spike
count decile (Figure 8). The
percentage of spikes emitted in the first 30 s was 8.27 ± 0.13%, which was
significantly less than the expected 10% (t(230) = 13.11, p < 0.0001). The
z-score for this decile was −0.78, while for the remaining deciles it did not
deviate more than 0.44 from zero (Figure 8(a)). A corresponding observation emerged from the y-intercept
analysis. The plots in Figure 8(b) are highly linear, with R values close to 1 for
most sessions (0.9979 ± 0.0002 for the 231 cells × sessions overall). However, the
regression lines did not go through zero: the y-intercepts averaged 18.22 +/- 1.05
s, which was significantly different from zero (t(230) = 21.44, p < 0.0001).
Thus, the time taken to accumulate the first decile’s worth of spikes in the PFD
range was almost 20 s longer than would be expected based on the subsequent deciles.
In order to determine whether this effect was due to dispersion of firing around
multiple directions or just to a general decline in spiking, we repeated the
analysis using all spikes, not just the ones in the PFD range; a similar, albeit
slightly attenuated effect was evident (Figure 8), suggesting a general reduction of
activity, rather than spatial dispersion, in the first 20–30 s of environment
exploration. We looked at movement correlates including distribution of HD with
respect to the PFD, linear velocity and AHV, and did not find any difference between
the first decile and subsequent ones that could explain this observation (not
shown). This slight reduction in spiking suggests that on entry into an environment
there is a period of time during which the system is acquiring the information
needed to drive the cells to firing threshold.
Figure 8.
Stabilisation of the preferred firing direction (PFD) on environment entry.
Data from a 40° range surrounding the PFD were divided into deciles of
either time (30 s bins) or spikes (10% total). (a) Top: Spike count as a
function of time decile revealed a reduced spike count in the first 30 s
(circled). Bottom: z-score analysis of those data revealed a larger negative
score for the first decile relative to the others, present for both spikes
in the PFD range and to a lesser extent in all the spikes. See Results for
statistical tests. (b) Top: The spikes from each 300 s trial were divided
into 10 deciles, and the time to reach each decile plotted. Each fine grey
line represents the plot from one cell over one session (averaged across
trials); the solid black line is the mean across all cells/sessions and the
dotted line extrapolates to the y-axis. Bottom: the y-intercepts, which
should be at zero, were clustered around a mean (black line) of 18 s for the
within-PFD spikes, indicating that it took extra time to reach the first
decile relative to subsequent deciles. As with the spike count data, the
effect was attenuated but still present when all spikes were considered.
Stabilisation of the preferred firing direction (PFD) on environment entry.
Data from a 40° range surrounding the PFD were divided into deciles of
either time (30 s bins) or spikes (10% total). (a) Top: Spike count as a
function of time decile revealed a reduced spike count in the first 30 s
(circled). Bottom: z-score analysis of those data revealed a larger negative
score for the first decile relative to the others, present for both spikes
in the PFD range and to a lesser extent in all the spikes. See Results for
statistical tests. (b) Top: The spikes from each 300 s trial were divided
into 10 deciles, and the time to reach each decile plotted. Each fine grey
line represents the plot from one cell over one session (averaged across
trials); the solid black line is the mean across all cells/sessions and the
dotted line extrapolates to the y-axis. Bottom: the y-intercepts, which
should be at zero, were clustered around a mean (black line) of 18 s for the
within-PFD spikes, indicating that it took extra time to reach the first
decile relative to subsequent deciles. As with the spike count data, the
effect was attenuated but still present when all spikes were considered.We compared these measures between PoS and RSC but found no differences. The total
percentage of spikes accumulated in the first 30 s of the trial did not differ
between PoS and RSC (t(229) = 1.86, p = 0.06) and the y-intercept measure was also
not different (t(229) = 1.87, p = 0.06). We finally looked at the two measures as a
function of cue type. The spike count percentages in the first 30 s did not differ
between HIGH, MOD and LOW cues (F(2, 228) = 0.2, p = 0.83). The y-intercept measure
showed a barely significant difference (F(2, 228) = 3,1, p = 0.048), but this went
in the opposite direction from expected (highly discriminable cues had a higher
y-intercept, at 21.14 s) and may have been due to the low n (n = 17) for the LOW
cues.In summary, the stabilisation analysis revealed a slight tendency for a slower
accumulation of spikes (in other words, slower development of firing), especially in
the PFD, in the first 20–30 s of each trial, but this did not depend on brain region
or cue type. Overall, this analysis reveals that actually there was a propensity for
firing to become established very soon after entry into the environment, even for
cues that were harder to discriminate.
Discussion
This study compared the activity of PoS and RSC HD cells in a landmark discrimination
setting, in which two opposing landmarks had similar overall shape and/or
contrast/luminance but differed in their fine-grained visual structure. The study
was motivated by previous findings that lesions to the PoS or RSC impair both
directional tuning stability and landmark control of HD cells in other parts of the
circuit, suggesting a role for these structures in directional landmark processing.
The aims were twofold: (a) to see whether the two regions differed in their
responsiveness, which might provide clues to their function, and (b) to see whether
HD cells could distinguish the landmarks by maintaining a consistent directional
relationship to the array, and if so, to determine how quickly this discrimination
occurred, and whether there were regional differences. These two considerations are
discussed in turn.
Firing properties of PoS versus RSC HD neurons
The basic firing properties we saw were similar to those reported previously,
with the exception that the peak firing rates we observed in PoS were
considerably lower than those that have been reported previously: ~8 Hz in our
study compared with ~35 Hz reported by Taube et al. (1990b) and Taube and Muller (1998)
and 19 Hz for Sharp
(1996). The reason for the large discrepancies between studies might
be due to the recording methods used, and the possible difficulty of the
single-wire recording methods of earlier studies to identify low-firing-rate
neurons. In support of this, a more recent study using tetrodes, as in the
present study, found a rate of 3 Hz in PoS HD cells (Brandon et al., 2012). We also averaged
across several trials, which may have brought the rates towards the mean.Relatively few differences in firing properties were seen in HD cells from the
two brain regions, but those that we observed replicated previous observations:
(a) firing rates were higher in RSC; (b) tuning curves were slightly broader and
(c) RSC firing anticipated HD by about 48 ms. The observation of higher firing
rates in RSC is consistent with a report by Sharp (2005), who found similar but
smaller differences in firing rate between these regions. We also found that
firing rate was weakly (albeit significantly) correlated with running speed,
with no differences between PoS and RSC. However, PoS was slightly more
influenced by AHV although modulation was low for both regions.The observation that RSC neurons anticipate upcoming HD’s, in our case by 48 ms,
is similar to that published previously. Anticipatory firing was first reported
by Blair and Sharp
(1995) for anterior thalamic HD neurons, which were found to predict
future HD by around 37 ms; this contrasted with PoS which did not show
anticipation. Taube and
Muller (1998) reported a value of around 23 ms for anterior thalamus,
and −7 ms (firing lagging HD) for PoS HD neurons. In a later study, RSC HD
neurons were also found to show anticipation, of around 25 ms (Cho and Sharp, 2001).
In this study, we also saw no anticipation in PoS neurons. The implication is
that RSC firing very slightly precedes PoS firing; it may be, therefore, that
the route of movement-related information flow is from RSC to PoS. This is
consistent with the observation that granular RSC neurons project to layer III
PoS (Kononenko and Witter,
2012), which is where many HD cells in this region are found (Boccara et al., 2010;
Preston-Ferrer et al.,
2016), the remainder being in the deep layers (Boccara et al., 2010; Preston-Ferrer et al.,
2016; Ranck,
1984; Taube et
al., 1990b). Anticipation may reflect vestibular or motor efference
copy signals, providing advance warning of upcoming head directions which can
then be combined with descending landmark-related sensory inputs. A study of ADN
neurons found that anticipatory firing also occurred, and indeed more
prominently, in association with passive head movements (Bassett et al., 2005), suggesting a
stronger vestibular contribution (Van der Meer et al., 2007). Clark et al. (2010)
found that neurotoxic RSC lesions increase anticipatory firing in the ADN,
possibly due to removal of an environment-anchoring stimulus and consequent
overweighting of the vestibular AHV inputs. The precise contributions of the
various self-motion signals, including how they may be differentially weighted
in different species and/or under different conditions, remains to be determined
(Cullen,
2014).Because of the connections of both regions with the hippocampal formation, and
because some theoretical models of HD cell processing require spatial inputs
(Bicanski and Burgess,
2016), we looked for spatial correlates of firing in the form of
place fields, or at least of reliable spatial heterogeneity. Both brain regions
yielded some cells showing weak spatial encoding, but in general spatial
modulation was low. For PoS, this observation is consistent with previous
studies from this area in which HD cells typically have neither place nor
theta-frequency modulation (Sharp, 1996). However, Cacucci et al. (2004) and Boccara et al. (2010)
did report conjunctive encoding in regions of presubiculum very close to PoS –
it is thus likely that there are regional differences in the occurrence of the
difference cell types. Overall, however, it seems unlikely that spatial inputs
provide a strong input to the HD cell signal directly (although the possibility
exists that spatial inputs gate landmark inputs and thus exert their influence
in a more subtle manner).
Landmark discrimination
One purpose of this study was to examine possible differences in landmark
processing by the two regions. Cells from both regions in all the different cue
conditions had unipolar tuning curves that were clustered around a single
direction relative to the cue pair, indicating that they could distinguish the
cues from the background and reliably orient by them. This was true even for the
visually identical cues; there was no hint that within a trial, the cells
flipped their firing from one direction to its polar opposite. There are two
possible reasons for this – one is that the rats could still distinguish the
cues by non-visual means (e.g. perhaps by olfaction) and did in fact fire in a
unipolar fashion with respect to the cues. This seems unlikely since there was
confusion between cues even for the ones that were moderately discriminable;
also, for the one rat in which the cues were identified by the experimenter and
visual and physical identities switched between trials, the firing directions
were less well predicted by physical identity. The other, more likely reason is
that firing was stabilised within a trial by self-motion signals. In other
words, having initially guessed at one of the two possible orientations of the
cue pair on entry into the environment, the cells were then anchored to that
orientation with the help of self-motion cues (since the rat knew, from these
cues, that it had not suddenly reversed direction). Henceforth, the system could
use the ambiguous landmark pair together with the self-motion cues to generate a
stable directional signal, whereby the landmarks would prevent the signal
drifting, and the self-motion cues would prevent it from flipping. This
proposition is consistent with the operation of attractor dynamics, as proposed
both by attractor network models (Knierim and Zhang, 2012) and following
population recordings of HD cells (Peyrache et al., 2015; Seelig and Jayaraman,
2015).Having established cue control by the landmark pair, we then looked to see
whether the cues within the pair could be further discriminated. We found that
discrimination of the non-identical cues was highest for the high-contrast HIGH
(black/white) cue pair but was also well above control levels for the patterned,
moderately discriminable (MOD) cues too. For one rat, we dissociated visual and
olfactory characteristics of the cue cards and found a clear contribution from
vision. These data show that these cortical HD regions, which are one synapse
away from the visual cortex (Vogt and Miller, 1983; Van Groen and Wyss, 1992), can access
information about internal structure of landmarks – furthermore, discrimination
occurs almost immediately upon entry into the environment, and remains stable
thereafter.When we looked at the period of time immediately after environment entry we found
a gradual increase in firing rate for the first few seconds, reflected in a
longer time to accumulate the first decile’s worth of spikes relative to
subsequent deciles. Thus, it seems that landmarks do not purely cause
directional clustering of a randomly distributed base level of activity, but add
drive to the system over and above baseline. Two previous studies have looked at
the dynamics of cue control and have found that although it takes a significant
amount of time – minutes – for a novel cue to gain control of HD cells (Goodridge et al.,
1998), cells respond to rotation of a familiar cue within a few tens of
milliseconds (Zugaro et al.,
2003). Our situation is different because although the landmarks were
generally familiar, measurements were made within the first few seconds of entry
into the environment, and also the cues needed to be discriminated. This could
be due to the slow onset of intrinsic network stabilisation, or it may be that a
number of cognitive factors come into play that influence HD cell firing in
these first few seconds – the animal may need time to adjust to the situation
and start attending to spatial cues, there may be a lag while the cues are
identified and the discrimination is made and so on. It would be interesting to
look at firing rate if the animal were placed into the arena without the cues,
to try and tease apart these possibilities.The rapidity with which landmark discrimination was established, in the absence
of explicit training, suggests that this two-cue HD cell paradigm may be a good
experimental method with which to test visual discrimination capabilities of
rats: for example, following lesions to visual brain areas. Because explicit
training may bias animals to focus on single features of multidimensional
stimuli (Jeffery,
2007), spontaneous recognition is preferable, but such processes may
be hard to detect in behavioural output. Cell activity on the other hand is
directly observable and easily measured. The fact that HD cells rapidly detect
and discriminate complex stimuli means that they may serve as a useful read-out
for sensory perception occurring within seconds or even faster.Overall, therefore, we found relatively few differences between PoS and RSC in
their cue responsiveness. The similarity in responding can be explained either
by similar computations being performed on the incoming visual signals by the
two regions or else by rapid communication between regions. It seems a priori
unlikely that the regions perform the same computations, but to address this
question in more detail it will be necessary to isolate the regions, either by
lesioning each in turn or by targeted opto- or chemogenetic interventions that
functionally disconnect them. This study additionally introduces a new
spontaneous visual discrimination method for probing visual processing by the
spatial system and reveals a basic capacity for the two cortical HD cell areas
to rapidly detect and discriminate landmarks. These experiments open the door to
investigations of transformation of the visual pathway following lesions or
selective inactivation of inputs to these areas. Our prediction is that even
when the object processing regions of the brain, such as perirhinal cortex, are
removed, HD neurons will still be able, using basic visual inputs from primary
visual areas, to discriminate similar landmarks and use them for
orientation.
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