Literature DB >> 30240499

The role of diversity in data-driven analysis of multi-subject fMRI data: Comparison of approaches based on independence and sparsity using global performance metrics.

Qunfang Long1, Suchita Bhinge1, Yuri Levin-Schwartz2, Zois Boukouvalas3, Vince D Calhoun4,5, Tülay Adalı1.   

Abstract

Data-driven methods have been widely used in functional magnetic resonance imaging (fMRI) data analysis. They extract latent factors, generally, through the use of a simple generative model. Independent component analysis (ICA) and dictionary learning (DL) are two popular data-driven methods that are based on two different forms of diversity-statistical properties of the data-statistical independence for ICA and sparsity for DL. Despite their popularity, the comparative advantage of emphasizing one property over another in the decomposition of fMRI data is not well understood. Such a comparison is made harder due to the differences in the modeling assumptions between ICA and DL, as well as within different ICA algorithms where each algorithm exploits a different form of diversity. In this paper, we propose the use of objective global measures, such as time course frequency power ratio, network connection summary, and graph theoretical metrics, to gain insight into the role that different types of diversity have on the analysis of fMRI data. Four ICA algorithms that account for different types of diversity and one DL algorithm are studied. We apply these algorithms to real fMRI data collected from patients with schizophrenia and healthy controls. Our results suggest that no one particular method has the best performance using all metrics, implying that the optimal method will change depending on the goal of the analysis. However, we note that in none of the scenarios we test the highly popular Infomax provides the best performance, demonstrating the cost of exploiting limited form of diversity.
© 2018 Wiley Periodicals, Inc.

Entities:  

Keywords:  ICA; data-driven analysis; dictionary learning; diversity; fMRI analysis; global metric; independence; performance evaluation; sparsity

Mesh:

Year:  2018        PMID: 30240499      PMCID: PMC6392437          DOI: 10.1002/hbm.24389

Source DB:  PubMed          Journal:  Hum Brain Mapp        ISSN: 1065-9471            Impact factor:   5.038


  53 in total

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3.  The dysplastic net hypothesis: an integration of developmental and dysconnectivity theories of schizophrenia.

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5.  Alcohol intoxication effects on simulated driving: exploring alcohol-dose effects on brain activation using functional MRI.

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6.  Functional segmentation of the brain cortex using high model order group PICA.

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Journal:  Hum Brain Mapp       Date:  2009-12       Impact factor: 5.038

7.  The role of diversity in data-driven analysis of multi-subject fMRI data: Comparison of approaches based on independence and sparsity using global performance metrics.

Authors:  Qunfang Long; Suchita Bhinge; Yuri Levin-Schwartz; Zois Boukouvalas; Vince D Calhoun; Tülay Adalı
Journal:  Hum Brain Mapp       Date:  2018-09-21       Impact factor: 5.038

Review 8.  Complex brain networks: graph theoretical analysis of structural and functional systems.

Authors:  Ed Bullmore; Olaf Sporns
Journal:  Nat Rev Neurosci       Date:  2009-02-04       Impact factor: 34.870

Review 9.  A review of group ICA for fMRI data and ICA for joint inference of imaging, genetic, and ERP data.

Authors:  Vince D Calhoun; Jingyu Liu; Tülay Adali
Journal:  Neuroimage       Date:  2008-11-13       Impact factor: 6.556

10.  An exploration of graph metric reproducibility in complex brain networks.

Authors:  Qawi K Telesford; Jonathan H Burdette; Paul J Laurienti
Journal:  Front Neurosci       Date:  2013-05-13       Impact factor: 4.677

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  5 in total

1.  The role of diversity in data-driven analysis of multi-subject fMRI data: Comparison of approaches based on independence and sparsity using global performance metrics.

Authors:  Qunfang Long; Suchita Bhinge; Yuri Levin-Schwartz; Zois Boukouvalas; Vince D Calhoun; Tülay Adalı
Journal:  Hum Brain Mapp       Date:  2018-09-21       Impact factor: 5.038

2.  Disjoint subspaces for common and distinct component analysis: Application to the fusion of multi-task FMRI data.

Authors:  M A B S Akhonda; Ben Gabrielson; Suchita Bhinge; Vince D Calhoun; Tülay Adali
Journal:  J Neurosci Methods       Date:  2021-05-03       Impact factor: 2.987

3.  Spatial Dynamic Functional Connectivity Analysis Identifies Distinctive Biomarkers in Schizophrenia.

Authors:  Suchita Bhinge; Qunfang Long; Vince D Calhoun; Tülay Adali
Journal:  Front Neurosci       Date:  2019-09-24       Impact factor: 4.677

4.  Association of Neuroimaging Data with Behavioral Variables: A Class of Multivariate Methods and Their Comparison Using Multi-Task FMRI Data.

Authors:  M A B S Akhonda; Yuri Levin-Schwartz; Vince D Calhoun; Tülay Adali
Journal:  Sensors (Basel)       Date:  2022-02-05       Impact factor: 3.576

5.  Independent vector analysis for common subspace analysis: Application to multi-subject fMRI data yields meaningful subgroups of schizophrenia.

Authors:  Qunfang Long; Suchita Bhinge; Vince D Calhoun; Tülay Adali
Journal:  Neuroimage       Date:  2020-04-28       Impact factor: 6.556

  5 in total

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