Literature DB >> 19059344

A review of group ICA for fMRI data and ICA for joint inference of imaging, genetic, and ERP data.

Vince D Calhoun1, Jingyu Liu, Tülay Adali.   

Abstract

Independent component analysis (ICA) has become an increasingly utilized approach for analyzing brain imaging data. In contrast to the widely used general linear model (GLM) that requires the user to parameterize the data (e.g. the brain's response to stimuli), ICA, by relying upon a general assumption of independence, allows the user to be agnostic regarding the exact form of the response. In addition, ICA is intrinsically a multivariate approach, and hence each component provides a grouping of brain activity into regions that share the same response pattern thus providing a natural measure of functional connectivity. There are a wide variety of ICA approaches that have been proposed, in this paper we focus upon two distinct methods. The first part of this paper reviews the use of ICA for making group inferences from fMRI data. We provide an overview of current approaches for utilizing ICA to make group inferences with a focus upon the group ICA approach implemented in the GIFT software. In the next part of this paper, we provide an overview of the use of ICA to combine or fuse multimodal data. ICA has proven particularly useful for data fusion of multiple tasks or data modalities such as single nucleotide polymorphism (SNP) data or event-related potentials. As demonstrated by a number of examples in this paper, ICA is a powerful and versatile data-driven approach for studying the brain.

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Year:  2008        PMID: 19059344      PMCID: PMC2651152          DOI: 10.1016/j.neuroimage.2008.10.057

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  38 in total

1.  A method for making group inferences from functional MRI data using independent component analysis.

Authors:  V D Calhoun; T Adali; G D Pearlson; J J Pekar
Journal:  Hum Brain Mapp       Date:  2001-11       Impact factor: 5.038

2.  Spatiotemporal pattern of neural processing in the human auditory cortex.

Authors:  Erich Seifritz; Fabrizio Esposito; Franciszek Hennel; Henrietta Mustovic; John G Neuhoff; Deniz Bilecen; Gioacchino Tedeschi; Klaus Scheffler; Francesco Di Salle
Journal:  Science       Date:  2002-09-06       Impact factor: 47.728

3.  A multivariate analysis of PET activation studies.

Authors:  K J Friston; J B Poline; A P Holmes; C D Frith; R S Frackowiak
Journal:  Hum Brain Mapp       Date:  1996       Impact factor: 5.038

4.  Independent component analysis of fMRI group studies by self-organizing clustering.

Authors:  Fabrizio Esposito; Tommaso Scarabino; Aapo Hyvarinen; Johan Himberg; Elia Formisano; Silvia Comani; Gioacchino Tedeschi; Rainer Goebel; Erich Seifritz; Francesco Di Salle
Journal:  Neuroimage       Date:  2005-01-08       Impact factor: 6.556

5.  Independent component analysis using an extended infomax algorithm for mixed subgaussian and supergaussian sources.

Authors:  T W Lee; M Girolami; T J Sejnowski
Journal:  Neural Comput       Date:  1999-02-15       Impact factor: 2.026

Review 6.  Independent component analysis of functional MRI: what is signal and what is noise?

Authors:  Martin J McKeown; Lars Kai Hansen; Terrence J Sejnowsk
Journal:  Curr Opin Neurobiol       Date:  2003-10       Impact factor: 6.627

7.  A method for multitask fMRI data fusion applied to schizophrenia.

Authors:  Vince D Calhoun; Tulay Adali; Kent A Kiehl; Robert Astur; James J Pekar; Godfrey D Pearlson
Journal:  Hum Brain Mapp       Date:  2006-07       Impact factor: 5.038

8.  Temporal lobe and "default" hemodynamic brain modes discriminate between schizophrenia and bipolar disorder.

Authors:  Vince D Calhoun; Paul K Maciejewski; Godfrey D Pearlson; Kent A Kiehl
Journal:  Hum Brain Mapp       Date:  2008-11       Impact factor: 5.038

9.  Alcohol dose effects on brain circuits during simulated driving: an fMRI study.

Authors:  Shashwath A Meda; Vince D Calhoun; Robert S Astur; Beth M Turner; Kathryn Ruopp; Godfrey D Pearlson
Journal:  Hum Brain Mapp       Date:  2009-04       Impact factor: 5.038

10.  Application of independent component analysis to microarrays.

Authors:  Su-In Lee; Serafim Batzoglou
Journal:  Genome Biol       Date:  2003-10-24       Impact factor: 13.583

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  370 in total

1.  Modeling task-based fMRI data via deep belief network with neural architecture search.

Authors:  Ning Qiang; Qinglin Dong; Wei Zhang; Bao Ge; Fangfei Ge; Hongtao Liang; Yifei Sun; Jie Gao; Tianming Liu
Journal:  Comput Med Imaging Graph       Date:  2020-06-06       Impact factor: 4.790

2.  Within-subject joint independent component analysis of simultaneous fMRI/ERP in an auditory oddball paradigm.

Authors:  J Mangalathu-Arumana; S A Beardsley; E Liebenthal
Journal:  Neuroimage       Date:  2012-02-22       Impact factor: 6.556

3.  Electrical tongue stimulation normalizes activity within the motion-sensitive brain network in balance-impaired subjects as revealed by group independent component analysis.

Authors:  Joseph C Wildenberg; Mitchell E Tyler; Yuri P Danilov; Kurt A Kaczmarek; Mary E Meyerand
Journal:  Brain Connect       Date:  2011-09-12

4.  Intrinsic limbic and paralimbic networks are associated with criminal psychopathy.

Authors:  Michelle Juárez; Kent A Kiehl; Vince D Calhoun
Journal:  Hum Brain Mapp       Date:  2012-03-19       Impact factor: 5.038

5.  Constrained source-based morphometry identifies structural networks associated with default mode network.

Authors:  Li Luo; Lai Xu; Rex Jung; Godfrey Pearlson; Tülay Adali; Vince D Calhoun
Journal:  Brain Connect       Date:  2012

6.  fMRI functional networks for EEG source imaging.

Authors:  Xu Lei; Peng Xu; Cheng Luo; Jinping Zhao; Dong Zhou; Dezhong Yao
Journal:  Hum Brain Mapp       Date:  2010-09-02       Impact factor: 5.038

Review 7.  Shifting from region of interest (ROI) to voxel-based analysis in human brain mapping.

Authors:  Loukas G Astrakas; Maria I Argyropoulou
Journal:  Pediatr Radiol       Date:  2010-05-13

8.  EEG-fMRI reciprocal functional neuroimaging.

Authors:  Lin Yang; Zhongming Liu; Bin He
Journal:  Clin Neurophysiol       Date:  2010-04-08       Impact factor: 3.708

9.  Incentives facilitate developmental improvement in inhibitory control by modulating control-related networks.

Authors:  Michael N Hallquist; Charles F Geier; Beatriz Luna
Journal:  Neuroimage       Date:  2018-01-31       Impact factor: 6.556

10.  Group-wise FMRI activation detection on DICCCOL landmarks.

Authors:  Jinglei Lv; Lei Guo; Dajiang Zhu; Tuo Zhang; Xintao Hu; Junwei Han; Tianming Liu
Journal:  Neuroinformatics       Date:  2014-10
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