| Literature DB >> 30231548 |
Nur Ilyana Jaafar1, Ramachandran Vasudevan2, Patimah Ismail3, Ahmad Fazli Abdul Aziz4, Nur Afiqah Mohamad5, Geetha Kandavello6, Raja Nurzatul Effah Raja Adnan7, Vinod Balasubramaniam8.
Abstract
Genetic polymorphisms are variations in DNA sequences which can influence either disease susceptibility, severity, or prognosis. Pulmonary arterial hypertension (PAH) is one of the complications that occurs in certain patients who have atrial septal defect (ASD). This study seeks to determine the association of gene polymorphisms with the pathogenesis of PAH in ASD patients. This study was conducted on 30 ASD patients with PAH, and 50 ASD patients who were not diagnosed with PAH. All respondents were Malay. Patients were selected based on stringent inclusion and exclusion criteria. Molecular analyses were done to detect the genetic polymorphisms of angiotensin converting enzyme (ACE I/D), serotonin transporter (5-HTTLPR), endothelial nitric oxide synthase (eNOS) G894T, and eNOS 4b/4a. The genotypes of these genetic polymorphisms were determined using conventional PCR and PCR-RFLP methods. The PCR products were analysed using agarose gel electrophoresis. Statistical analysis was done using SPSS Version 22. Clinical characteristics, such as the diameter of ASD, mean arterial pressure (MAP), and mean pulmonary artery pressure (mPAP) differed significantly (p < 0.05). Based on the statistical analysis, ACE I/D, eNOS G894T, and eNOS 4b/4a do not contribute to the progression of PAH amongst ASD patients (p > 0.05). However, the L allele of the 5-HTTLPR gene polymorphism may have an affect on the development of PAH in ASD patients (p < 0.05).Entities:
Keywords: atrial septal defect; genetic polymorphisms; pulmonary artery hypertension
Year: 2018 PMID: 30231548 PMCID: PMC6162525 DOI: 10.3390/jcdd5030048
Source DB: PubMed Journal: J Cardiovasc Dev Dis ISSN: 2308-3425
Primers and PCR product for each gene polymorphisms.
| Gene Polymorphisms | Primers | PCR Cycling Conditions | PCR Products (bp) | References | |
|---|---|---|---|---|---|
| Forward: 5′-CTG GAG ACC ACT CCC ATC CTT TCT-3′ | Denaturation | 95 °C, 1 min | 190—DD | [ | |
| Forward: 5′-TGG GAC CAC AGC GCC CGC CAC TAC-3′ | Denaturation | 94 °C, 30 s | 353—I allele | [ | |
| Forward: 5′-AAG GCA GGA GAC AGT GGA TGG A-3′ | Denaturation | 94 °C, 30 s | 248 | [ | |
|
| Forward: 5′-AGG CCC TAT GGT AGT GCC TTT-3′ | Denaturation | 94 °C, 1 min | 393—4a/a | [ |
| Forward: 5′-GGC GTT GCC GCT CTG AAT GC-3′ | Denaturation | 94 °C, 30 s | 528—LL | [ | |
Clinical characteristics of PAH patients and control subjects.
| Parameter | Case Subjects | Control Subjects | |
|---|---|---|---|
| Gender, M/F | 2/28 | 6/44 | - |
| Age | 33.33 ± 9.316 | 37.50 ± 14.971 | 0.174 |
| Age diagnosed | 28.97 ± 8.838 | 32.80 ± 14.474 | 0.194 |
| Diameter of defects (cm) | 3.19 ± 4.018 | 1.88 ± 0.852 | * 0.028 |
| MAP (mmHg) | 89.30 ± 12.438 | 78.82 ± 18.169 | * 0.007 |
| mPAP (mmHg) | 58.88 ± 14.53 | 22.04 ± 10.517 | * 0.000 |
PAH, pulmonary arterial hypertension; ASD, atrial septal defect; MAP, mean arterial pressure; mPAP, mean pulmonary arterial pressure. * Significant p < 0.05. Values shown are mean ± SD.
Figure 1(a) Amplification of ACE I/D in 2% agarose gel. DD genotype was denoted by 490 bp band (Lane 2 & 3) and II genotype was shown by 190 bp band (Lane 8 & 9) whereas ID genotype showed both 190 bp and 490 bp bands (Lane 5 & 6). (b) Mistyping of ACE I/D. I allele showed 335 bp band (Lane 5 & 6) whereas DD genotype was proven by the absence of any band (Lane 2 & 3). (c) Restriction fragments in 4% agarose gel. Heterozygous type (GT genotype) showed three bands consists of 85 bp, 163 bp and 248 bp (Lane 1 & 2). GG genotype was showed by 85 bp and 163 bp bands (Lane 3). Lane 4 shows the undigested 248 bp band, which was TT genotype (mutant). (d) PCR product of eNOS 4b/4a amplification in 2% agarose. Heterozygous sample (4a/b) was shown by both 393 bp and 420 bp bands (Lane 2 & 3). Wild type (4b/b) was shown by a 420 bp band (Lane 5 & 6). 393 bp band indicated a mutant (4a/a) sample (Lane 8). (e) Amplification of 5-HTTLPR in 1.5% agarose gel. A heterozygous type (LS genotype) showed both 484 bp and 528 bp bands (Lane 2 & 3). SS genotype was indicated by 484 b p band (Lane 5 & 6) whereas LL genotype was shown by a 528 bp band (Lane 8 & 9). M: 100-bp marker.
Distribution of genotypes and allele frequencies of each gene polymorphisms between PAH patients and control subjects.
| Gene Polymorphism | PAH Patients (n = 30) | Control Subjects (n = 50) | Odds Ratio | ||
|---|---|---|---|---|---|
|
| Genotypes | 0.68 | |||
| II | 17 (56.67%) | 22 (44%) | 0.53 | ||
| ID | 12 (40%) | 25 (50%) | |||
| DD | 1 (3.33%) | 3 (6%) | |||
| Alleles | |||||
| I | 46 (76.67%) | 69 (69%) | 0.30 | ||
| D | 14 (23.33%) | 31 (31%) | |||
|
| Genotypes | ||||
| GG | 0 (0%) | 1 (2%) | 0.63 | 0.98 | |
| GT | 29 (96.67%) | 47 (94%) | |||
| TT | 1 (3.33%) | 2 (4%) | |||
| Alleles | |||||
| G | 29 (48.33%) | 49 (49%) | 0.94 | ||
| T | 31 (51.67%) | 51 (51%) | |||
|
| Genotypes | ||||
| 4b/b | 21 (70%) | 35 (70%) | 0.57 | 1.217 | |
| 4a/a (mutant) | 5 (16.7%) | 5 (10%) | |||
| 4a/b | 4 (13.3%) | 10 (20%) | |||
| Alleles | |||||
| a | 14 (23.33%) | 20 (20%) | 0.62 | ||
| b | 46 (76.67%) | 80 (80%) | |||
|
| Genotypes | 0.43 | |||
| SS | 6 (20%) | 23 (46%) | 0.06 | ||
| LL | 12 (40%) | 12 (24%) | |||
| LS | 12 (40%) | 15 (30%) | |||
| Alleles | |||||
| S | 24 (40%) | 61 (61%) | * 0.01 | ||
| L | 36 (60%) | 39 (39%) | |||
* Value (p < 0.05) was obtained using chi-square test as compared with controls. Data are reported as number of subjects, with percent in parentheses.
Distribution between polymorphisms and clinical characteristics of the subjects.
| Gene Polymorphism | ASD with PAH (Case) | ASD without PAH (Control) | ||||||
|---|---|---|---|---|---|---|---|---|
| Age * | Size of Defect * | MAP * | mPAP * | Age * | Size of Defect * | MAP * | mPAP * | |
|
| ||||||||
| II | 32.71 ± 9.51 | 2.59 ± 0.88 | 90.71 ± 10.51 | 59.09 ± 17.53 | 36.95 ± 13.54 | 2.18 ± 0.77 | 72.86 ± 23.51 | 24.23 ± 12.59 |
| ID | 34.42 ± 9.75 | 4.29 ± 6.23 | 87.25 ± 15.48 | 58.92 ± 10.40 | 39.64 ± 16.03 | 1.66 ± 0.83 | 84.20 ± 10.79 | 20.64 ± 8.58 |
| DD | 31.00 ± 0.00 | 0.22 ± 0.00 | 90.00 ± 0.00 | 55.00 ± 0.00 | 23.67 ± 11.59 | 1.44 ± 1.24 | 77.67 ± 11.68 | 17.67 ± 7.64 |
|
| ||||||||
| GG | - | - | - | - | 29.00 ± 0.00 | 1.96 ± 0.00 | 77.00 ± 0.00 | 17.00 ± 0.00 |
| GT | 32.66 ± 8.69 | 3.22 ± 4.09 | 89.10 ± 12.61 | 58.98 ± 14.77 | 38.07 ± 15.48 | 1.91 ± 0.85 | 78.54 ± 18.90 | 35.11 ± 21.98 |
| TT | 53.00 ± 0.00 | 2.30 ± 0.00 | 95.00 ± 0.00 | 56.00 ± 0.00 | 31.67 ± 1.53 | 1.27 ± 0.90 | 83.67 ± 4.04 | 35.75 ± 17.21 |
|
| ||||||||
| 4b/b | 35.48 ± 9.82 | 3.60 ± 4.45 | 89.29 ± 13.17 | 58.07 ± 14.23 | 38.37 ± 16.24 | 1.94 ± 0.87 | 78.91 ± 11.78 | 21.69 ± 9.40 |
| 4a/b | 27.50 ± 8.43 | 3.75 ± 3.59 | 93.25 ± 15.15 | 71.50 ± 13.48 | 36.90 ± 13.34 | 1.85 ± 0.82 | 78.50 ± 24.29 | 26.70 ± 14.47 |
| 4a/a | 29.00 ± 3.54 | 1.05 ± 1.23 | 86.20 ± 7.40 | 52.20 ± 12.76 | 32.60 ± 8.17 | 1.47 ± 0.82 | 78.70 ± 5.40 | 15.20 ± 4.32 |
|
| ||||||||
| SS | 36.00 ± 9.80 | 2.77 ± 0.77 | 93.33 ± 8.60 | 52.67 ± 11.38 | 38.52 ± 15.73 | 1.87 ± 0.87 | 78.35 ± 20.18 | 22.65 ± 11.27 |
| LS | 33.50 ± 10.71 | 4.57 ± 6.12 | 88.08 ± 11.57 | 59.08 ± 17.05 | 40.13 ± 14.82 | 1.98 ± 0.71 | 78.87 ± 19.70 | 22.20 ± 10.52 |
| LL | 31.83 ± 8.01 | 2.04 ± 1.09 | 88.50 ± 15.14 | 61.79 ± 13.28 | 32.25 ± 13.51 | 1.76 ± 1.02 | 79.66 ± 12.70 | 20.67 ± 11.45 |
Values are mean ± SD. * = not significant (p > 0.05).
Genotypes and allele frequency distribution.
| Population | Disease | No | Genotypes (%) | Allele (%) | Study | |||||
|---|---|---|---|---|---|---|---|---|---|---|
|
| II | ID | DD | I | D | |||||
| Malaysia | HPT | 65 | 36.9 | 52.3 | 10.8 | * | 63.08 | 36.92 | ** | [ |
| USA | PPH | 60 | 45 | 35 | 20 | ** | - | - | - | [ |
| Caucasian | COPD | 66 | 22.73 | 46.97 | 30.3 | * | - | - | - | [ |
| Romania | PAH | 29 | 6.90 | 58.62 | 34.48 | * | 39.58 | 60.42 | * | [ |
| German | PPH | 51 | 9.8 | 58.82 | 31.37 | NS | - | - | - | [ |
| Iran | CAD | 224 | 12.5 | 38.84 | 48.66 | NS | 31.92 | 68.08 | NS | [ |
| Malaysia | PAH | 30 | 56.67 | 40.0 | 3.33 | NS | 76.67 | 23.33 | NS | Current study |
|
| GG | GT | TT | G | T | |||||
| Germany | IPAH | 16 | 27 | 53 | 20 | NS | 53 | 47 | NS | [ |
| India | IPAH | 77 | 50.65 | 41.16 | 51.95 | NS | 72.73 | 27.27 | NS | [ |
| India | EH | 226 | 139 | 82 | 5 | *** | 79.65 | 20.35 | *** | [ |
| Malaysia | PAH | 30 | 0 | 96.67 | 3.33 | NS | 48.33 | 51.67 | NS | Current study |
|
| bb | ab | Aa | p | a | b | ||||
| Germany | IPAH | 16 | 67 | 33 | - | NS | 83 | 17 | NS | [ |
| Turkey | PH in COPD | 24 | 83 | 17 | 0 | * | 8.33 | 91.67 | - | [ |
| Swiss | PH in COPD | 27 | 63 | 33 | 4 | NS | 20.37 | 79.63 | - | [ |
| Malaysia | ESRD | 150 | 87.33 | 11.33 | 1.33 | NS | 93 | 7 | NS | [ |
| Malaysia | PAH | 30 | 70 | 16.67 | 13.33 | NS | 23.33 | 58.78 | NS | Current study |
|
| SS | LS | LL | p | S | L | ||||
| Caucasian | IPAH | 11 | 81.82 | 0 | 18.18 | * | 18.18 | 81.82 | - | [ |
| Germany | COPD + PAH | 27 | 18.52 | 59.26 | 22.22 | - | 51.85 | 48.15 | * | [ |
| Spain | IPAH + 2° PAH | 49 | 26.53 | 28.15 | 20.41 | NS | 46.94 | 53.06 | - | [ |
| Chinese | VSD-related PAH | 140 | 50.71 | 36.43 | 12.86 | * | 31.07 | 68.93 | - | [ |
| Malaysia | PAH | 30 | 20 | 40 | 40 | NS | 40 | 60 | * | Current study |
HPT, hypertension; PPH, primary pulmonary hypertension; COPD, cardiac obstructive pulmonary disease; PAH, pulmonary arterial hypertension; CAD, coronary artery disease; EH, essential hypertension; ESRD, end stage renal disease; IPAH, idiopathic pulmonary arterial hypertension; VSD, ventricular septal defect * (p < 0.05), ** (p < 0.01), *** (p < 0.001), at 5% level of significance, NS: not significant (p > 0.05).