Literature DB >> 3022242

kDNA minicircles of the major sequence class of C. fasciculata contain a single region of bent helix widely separated from the two origins of replication.

D S Ray, J C Hines, H Sugisaki, C Sheline.   

Abstract

The major sequence class of Crithidia fasciculata minicircles is shown to have a single region of bent helical DNA widely separated from the two replication origins located 180 degrees apart on the minicircle map. The position of the bend in the DNA has been mapped both by gel electrophoretic methods and by direct electron microscopic observation of the DNA. This sequence directed bending is apparently the result of homopolymeric dA X dT tracts 4-6 base pairs long repeated in phase with the helix screw. The region of the bend contains nineteen such homopolymeric tracts in a region of about 200 base pairs with sixteen of the tracts oriented in the same direction.

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Year:  1986        PMID: 3022242      PMCID: PMC311827          DOI: 10.1093/nar/14.20.7953

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  21 in total

Review 1.  Kinetoplast DNA.

Authors:  P Borst; J H Hoeijmakers
Journal:  Plasmid       Date:  1979-01       Impact factor: 3.466

2.  Physical characterization of a kinetoplast DNA fragment with unusual properties.

Authors:  J C Marini; P N Effron; T C Goodman; C K Singleton; R D Wells; R M Wartell; P T Englund
Journal:  J Biol Chem       Date:  1984-07-25       Impact factor: 5.157

3.  Two identical symmetrical regions in the minicircle structure of Trypanosoma lewisi kinetoplast DNA.

Authors:  M Ponzi; C Birago; P A Battaglia
Journal:  Mol Biochem Parasitol       Date:  1984-09       Impact factor: 1.759

4.  Presence of a bent helix in fragments of kinetoplast DNA minicircles from several trypanosomatid species.

Authors:  J M Ntambi; J C Marini; J D Bangs; S L Hajduk; H E Jimenez; P A Kitchin; V A Klein; K A Ryan; P T Englund
Journal:  Mol Biochem Parasitol       Date:  1984-07       Impact factor: 1.759

5.  Sequence dependence of the curvature of DNA: a test of the phasing hypothesis.

Authors:  P J Hagerman
Journal:  Biochemistry       Date:  1985-12-03       Impact factor: 3.162

6.  A bent helix in kinetoplast DNA.

Authors:  J C Marini; S D Levene; D M Crothers; P T Englund
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1983

7.  Replication of kinetoplast DNA in isolated kinetoplasts from Crithidia fasciculata. Identification of minicircle DNA replication intermediates.

Authors:  L Birkenmeyer; D S Ray
Journal:  J Biol Chem       Date:  1986-02-15       Impact factor: 5.157

8.  Sequence heterogeneity and anomalous electrophoretic mobility of kinetoplast minicircle DNA from Leishmania tarentolae.

Authors:  G Z Kidane; D Hughes; L Simpson
Journal:  Gene       Date:  1984-03       Impact factor: 3.688

9.  The majority of minicircle DNA in Crithidia fasciculata strain CF-C1 is of a single class with nearly homogeneous DNA sequence.

Authors:  L Birkenmeyer; H Sugisaki; D S Ray
Journal:  Nucleic Acids Res       Date:  1985-10-11       Impact factor: 16.971

10.  Construction and characterization of new coliphage M13 cloning vectors.

Authors:  J C Hines; D S Ray
Journal:  Gene       Date:  1980-11       Impact factor: 3.688

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  8 in total

1.  Leishmania tarentolae minicircles of different sequence classes encode single guide RNAs located in the variable region approximately 150 bp from the conserved region.

Authors:  N R Sturm; L Simpson
Journal:  Nucleic Acids Res       Date:  1991-11-25       Impact factor: 16.971

Review 2.  The mechanism of U insertion/deletion RNA editing in kinetoplastid mitochondria.

Authors:  J D Alfonzo; O Thiemann; L Simpson
Journal:  Nucleic Acids Res       Date:  1997-10-01       Impact factor: 16.971

3.  Replication of DNA minicircles in kinetoplasts isolated from Crithidia fasciculata: structure of nascent minicircles.

Authors:  C Sheline; T Melendy; D S Ray
Journal:  Mol Cell Biol       Date:  1989-01       Impact factor: 4.272

4.  Nucleus-encoded histone H1-like proteins are associated with kinetoplast DNA in the trypanosomatid Crithidia fasciculata.

Authors:  C W Xu; J C Hines; M L Engel; D G Russell; D S Ray
Journal:  Mol Cell Biol       Date:  1996-02       Impact factor: 4.272

5.  Mitochondrial minicircles in the free-living bodonid Bodo saltans contain two gRNA gene cassettes and are not found in large networks.

Authors:  D Blom; A de Haan; J van den Burg; M van den Berg; P Sloof; M Jirku; J Lukes; R Benne
Journal:  RNA       Date:  2000-01       Impact factor: 4.942

6.  Species-specific patterns of DNA bending and sequence.

Authors:  J D VanWye; E C Bronson; J N Anderson
Journal:  Nucleic Acids Res       Date:  1991-10-11       Impact factor: 16.971

7.  Structure of discontinuities in kinetoplast DNA-associated minicircles during S phase in Crithidia fasciculata.

Authors:  Jane C Hines; Dan S Ray
Journal:  Nucleic Acids Res       Date:  2007-11-26       Impact factor: 16.971

8.  Comparison of the Mitochondrial Genomes and Steady State Transcriptomes of Two Strains of the Trypanosomatid Parasite, Leishmania tarentolae.

Authors:  Larry Simpson; Stephen M Douglass; James A Lake; Matteo Pellegrini; Feng Li
Journal:  PLoS Negl Trop Dis       Date:  2015-07-23
  8 in total

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