Literature DB >> 30218362

Visualizing the Dynamics of Inactive X Chromosomes in Living Cells Using Antibody-Based Fluorescent Probes.

Yuko Sato1, Timothy J Stasevich2,3, Hiroshi Kimura4,5.   

Abstract

The inactive X chromosome (Xi) harbors characteristic epigenetic features, including the enrichment of histone H3 lysine 27 trimethylation (H3K27me3) and H4 lysine 20 monomethylation (H4K20me1) as well as a lack of histone acetylation. Recently, these modifications have been visualized not only in fixed specimen, but also in living cells via probes derived from modification-specific antibodies. The probes include fluorescently labeled antigen binding fragments (Fabs), which can be loaded into cells, as well as genetically encoded single-chain variable fragments tagged with the green fluorescent protein. We refer to the latter as modification specific intracellular antibodies, or "mintbodies" for short. By using Fabs or mintbodies to target Xi-specific modifications, the dynamics of Xi in living cells can be visualized.

Entities:  

Keywords:  Histone modifications; Live-cell imaging; Mintbody; Monoclonal antibody

Mesh:

Substances:

Year:  2018        PMID: 30218362     DOI: 10.1007/978-1-4939-8766-5_8

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  8 in total

1.  Multiplexed Imaging of Posttranslational Modifications of Endogenous Proteins in Live Cells.

Authors:  Yuko Sato; Hiroshi Kimura
Journal:  Methods Mol Biol       Date:  2021

2.  Live Cell Synthetic Histone Acetylation by Chemical Catalyst.

Authors:  Shigehiro A Kawashima; Motomu Kanai
Journal:  Methods Mol Biol       Date:  2023

3.  Live-cell epigenome manipulation by synthetic histone acetylation catalyst system.

Authors:  Yusuke Fujiwara; Yuki Yamanashi; Akiko Fujimura; Yuko Sato; Tomoya Kujirai; Hitoshi Kurumizaka; Hiroshi Kimura; Kenzo Yamatsugu; Shigehiro A Kawashima; Motomu Kanai
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-26       Impact factor: 12.779

4.  Histone H3K27 acetylation precedes active transcription during zebrafish zygotic genome activation as revealed by live-cell analysis.

Authors:  Yuko Sato; Lennart Hilbert; Haruka Oda; Yinan Wan; John M Heddleston; Teng-Leong Chew; Vasily Zaburdaev; Philipp Keller; Timothee Lionnet; Nadine Vastenhouw; Hiroshi Kimura
Journal:  Development       Date:  2019-09-30       Impact factor: 6.868

5.  H4K20me1 and H3K27me3 are concurrently loaded onto the inactive X chromosome but dispensable for inducing gene silencing.

Authors:  Sjoerd J D Tjalsma; Mayako Hori; Yuko Sato; Aurelie Bousard; Akito Ohi; Ana Cláudia Raposo; Julia Roensch; Agnes Le Saux; Jumpei Nogami; Kazumitsu Maehara; Tomoya Kujirai; Tetsuya Handa; Sandra Bagés-Arnal; Yasuyuki Ohkawa; Hitoshi Kurumizaka; Simão Teixeira da Rocha; Jan J Żylicz; Hiroshi Kimura; Edith Heard
Journal:  EMBO Rep       Date:  2021-02-19       Impact factor: 9.071

Review 6.  Nuclear envelope mechanobiology: linking the nuclear structure and function.

Authors:  Matthew Goelzer; Julianna Goelzer; Matthew L Ferguson; Corey P Neu; Gunes Uzer
Journal:  Nucleus       Date:  2021-12       Impact factor: 4.197

7.  Live imaging of transcription sites using an elongating RNA polymerase II-specific probe.

Authors:  Satoshi Uchino; Yuma Ito; Yuko Sato; Tetsuya Handa; Yasuyuki Ohkawa; Makio Tokunaga; Hiroshi Kimura
Journal:  J Cell Biol       Date:  2021-12-02       Impact factor: 10.539

8.  Bead Loading Proteins and Nucleic Acids into Adherent Human Cells.

Authors:  Charlotte Ayn Cialek; Gabriel Galindo; Amanda Lynn Koch; Matthew Neeley Saxton; Timothy John Stasevich
Journal:  J Vis Exp       Date:  2021-06-01       Impact factor: 1.424

  8 in total

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