Literature DB >> 30218225

Stability of point process spiking neuron models.

Yu Chen1, Qi Xin2, Valérie Ventura3, Robert E Kass3.   

Abstract

Point process regression models, based on generalized linear model (GLM) technology, have been widely used for spike train analysis, but a recent paper by Gerhard et al. described a kind of instability, in which fitted models can generate simulated spike trains with explosive firing rates. We analyze the problem by extending the methods of Gerhard et al. First, we improve their instability diagnostic and extend it to a wider class of models. Next, we point out some common situations in which instability can be traced to model lack of fit. Finally, we investigate distinctions between models that use a single filter to represent the effects of all spikes prior to any particular time t, as in a 2008 paper by Pillow et al., and those that allow different filters for each spike prior to time t, as in a 2001 paper by Kass and Ventura. We re-analyze the data sets used by Gerhard et al., introduce an additional data set that exhibits bursting, and use a well-known model described by Izhikevich to simulate spike trains from various ground truth scenarios. We conclude that models with multiple filters tend to avoid instability, but there are unlikely to be universal rules. Instead, care in data fitting is required and models need to be assessed for each unique set of data.

Entities:  

Keywords:  Generalized linear model; Outlier trials; Point process regression; Spike train

Year:  2018        PMID: 30218225      PMCID: PMC6454925          DOI: 10.1007/s10827-018-0695-7

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  12 in total

1.  The time-rescaling theorem and its application to neural spike train data analysis.

Authors:  Emery N Brown; Riccardo Barbieri; Valérie Ventura; Robert E Kass; Loren M Frank
Journal:  Neural Comput       Date:  2002-02       Impact factor: 2.026

2.  Which model to use for cortical spiking neurons?

Authors:  Eugene M Izhikevich
Journal:  IEEE Trans Neural Netw       Date:  2004-09

3.  Trial-to-trial variability and its effect on time-varying dependency between two neurons.

Authors:  Valérie Ventura; Can Cai; Robert E Kass
Journal:  J Neurophysiol       Date:  2005-10       Impact factor: 2.714

4.  Detection of bursts in extracellular spike trains using hidden semi-Markov point process models.

Authors:  Surya Tokdar; Peiyi Xi; Ryan C Kelly; Robert E Kass
Journal:  J Comput Neurosci       Date:  2009-08-21       Impact factor: 1.621

5.  The distribution of the intervals between neural impulses in the maintained discharges of retinal ganglion cells.

Authors:  M W Levine
Journal:  Biol Cybern       Date:  1991       Impact factor: 2.086

6.  An information-geometric framework for statistical inferences in the neural spike train space.

Authors:  Wei Wu; Anuj Srivastava
Journal:  J Comput Neurosci       Date:  2011-05-17       Impact factor: 1.621

7.  Capturing the Dynamical Repertoire of Single Neurons with Generalized Linear Models.

Authors:  Alison I Weber; Jonathan W Pillow
Journal:  Neural Comput       Date:  2017-09-28       Impact factor: 2.026

8.  Discrete time rescaling theorem: determining goodness of fit for discrete time statistical models of neural spiking.

Authors:  Robert Haslinger; Gordon Pipa; Emery Brown
Journal:  Neural Comput       Date:  2010-10       Impact factor: 2.026

9.  Spatio-temporal correlations and visual signalling in a complete neuronal population.

Authors:  Jonathan W Pillow; Jonathon Shlens; Liam Paninski; Alexander Sher; Alan M Litke; E J Chichilnisky; Eero P Simoncelli
Journal:  Nature       Date:  2008-07-23       Impact factor: 49.962

10.  On the stability and dynamics of stochastic spiking neuron models: Nonlinear Hawkes process and point process GLMs.

Authors:  Felipe Gerhard; Moritz Deger; Wilson Truccolo
Journal:  PLoS Comput Biol       Date:  2017-02-24       Impact factor: 4.475

View more
  3 in total

1.  Emerging techniques in statistical analysis of neural data.

Authors:  Sridevi V Sarma
Journal:  J Comput Neurosci       Date:  2019-02       Impact factor: 1.621

2.  Stability of stochastic finite-size spiking-neuron networks: Comparing mean-field, 1-loop correction and quasi-renewal approximations.

Authors:  Dmitrii Todorov; Wilson Truccolo
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2019-07

3.  Characterizing and dissociating multiple time-varying modulatory computations influencing neuronal activity.

Authors:  Kaiser Niknam; Amir Akbarian; Kelsey Clark; Yasin Zamani; Behrad Noudoost; Neda Nategh
Journal:  PLoS Comput Biol       Date:  2019-09-12       Impact factor: 4.475

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.