Literature DB >> 28957020

Capturing the Dynamical Repertoire of Single Neurons with Generalized Linear Models.

Alison I Weber1, Jonathan W Pillow2.   

Abstract

A key problem in computational neuroscience is to find simple, tractable models that are nevertheless flexible enough to capture the response properties of real neurons. Here we examine the capabilities of recurrent point process models known as Poisson generalized linear models (GLMs). These models are defined by a set of linear filters and a point nonlinearity and are conditionally Poisson spiking. They have desirable statistical properties for fitting and have been widely used to analyze spike trains from electrophysiological recordings. However, the dynamical repertoire of GLMs has not been systematically compared to that of real neurons. Here we show that GLMs can reproduce a comprehensive suite of canonical neural response behaviors, including tonic and phasic spiking, bursting, spike rate adaptation, type I and type II excitation, and two forms of bistability. GLMs can also capture stimulus-dependent changes in spike timing precision and reliability that mimic those observed in real neurons, and can exhibit varying degrees of stochasticity, from virtually deterministic responses to greater-than-Poisson variability. These results show that Poisson GLMs can exhibit a wide range of dynamic spiking behaviors found in real neurons, making them well suited for qualitative dynamical as well as quantitative statistical studies of single-neuron and population response properties.

Year:  2017        PMID: 28957020     DOI: 10.1162/neco_a_01021

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  18 in total

1.  Stability of point process spiking neuron models.

Authors:  Yu Chen; Qi Xin; Valérie Ventura; Robert E Kass
Journal:  J Comput Neurosci       Date:  2018-09-15       Impact factor: 1.621

2.  Neural coding and perception of auditory motion direction based on interaural time differences.

Authors:  Nathaniel J Zuk; Bertrand Delgutte
Journal:  J Neurophysiol       Date:  2019-08-28       Impact factor: 2.714

3.  Inferring synaptic inputs from spikes with a conductance-based neural encoding model.

Authors:  Kenneth W Latimer; Fred Rieke; Jonathan W Pillow
Journal:  Elife       Date:  2019-12-18       Impact factor: 8.140

4.  Structured random receptive fields enable informative sensory encodings.

Authors:  Biraj Pandey; Marius Pachitariu; Bingni W Brunton; Kameron Decker Harris
Journal:  PLoS Comput Biol       Date:  2022-10-10       Impact factor: 4.779

5.  Stability of stochastic finite-size spiking-neuron networks: Comparing mean-field, 1-loop correction and quasi-renewal approximations.

Authors:  Dmitrii Todorov; Wilson Truccolo
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2019-07

6.  Stochastic point process models for multi-compartment dendritic-tree input-output transformations in spiking neurons.

Authors:  D Saha; W Truccolo
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2019-07

7.  Identification of Multiple Noise Sources Improves Estimation of Neural Responses across Stimulus Conditions.

Authors:  Alison I Weber; Eric Shea-Brown; Fred Rieke
Journal:  eNeuro       Date:  2021-07-06

8.  On the stability and dynamics of stochastic spiking neuron models: Nonlinear Hawkes process and point process GLMs.

Authors:  Felipe Gerhard; Moritz Deger; Wilson Truccolo
Journal:  PLoS Comput Biol       Date:  2017-02-24       Impact factor: 4.475

9.  Spontaneous activity emerging from an inferred network model captures complex spatio-temporal dynamics of spike data.

Authors:  Cristiano Capone; Guido Gigante; Paolo Del Giudice
Journal:  Sci Rep       Date:  2018-11-19       Impact factor: 4.379

10.  Firing-rate models for neurons with a broad repertoire of spiking behaviors.

Authors:  Thomas Heiberg; Birgit Kriener; Tom Tetzlaff; Gaute T Einevoll; Hans E Plesser
Journal:  J Comput Neurosci       Date:  2018-08-27       Impact factor: 1.621

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