| Literature DB >> 30215230 |
Jae Seok Kim1, Su Kyung Lee2, Dae Hyun Ko2, Jungwon Hyun2, Hyun Soo Kim3.
Abstract
BACKGROUND: The Automated Fluorescent Immunoassay System (AFIAS) rotavirus assay (Boditech Med Inc., Chuncheon, Korea) is a new rapid antigen test for rotavirus detection. We evaluated the performance of this assay for detecting rotaviruses and their specific genotypes in clinical stool samples.Entities:
Keywords: AFIAS rotavirus assay; Genotype; Immunoassay; Performance; Rotavirus
Mesh:
Substances:
Year: 2019 PMID: 30215230 PMCID: PMC6143470 DOI: 10.3343/alm.2019.39.1.50
Source DB: PubMed Journal: Ann Lab Med ISSN: 2234-3806 Impact factor: 3.464
Viruses, bacteria, and fungi tested for cross-reactivity
| Viruses and fungi | Bacteria |
|---|---|
| Adenovirus Type 40 (ATCC VR-931) | |
| Adenovirus Type 41 (ATCC VR-930) | |
| Adenovirus Type 31 (ATCC VR-1109) | |
| Adenovirus Type 1 (KBPV-VR-57) | |
| Adenovirus Type 2 (KBPV-VR-58) | |
| Adenovirus Type 3 (KBPV-VR-2) | |
| Adenovirus Type 4 (KBPV-VR-60) | |
| Astrovirus (fecal sample from patient) | |
| Coxsackievirus B Type 3 (ATCC VR-688) | |
| Coxsackievirus B Type 6 (ATCC VR-1037) Cytomegalovirus (ATCC VR-538) | |
| Enterovirus Type 71 (ATCC VR-784) | Methicillin-resistant |
| Herpes simplex virus Type 1 (ATCC-VR-733) | |
| Herpes simplex virus Type 2 (ATCC-VR-734) Norovirus (fecal sample from patient) | |
| Poliovirus Type 1 (ATCC VR-58) | |
Abbreviations: ATCC, American Type Culture Collection; KBPV, Korea Bank for Pathologic Viruses; KCCM, Korean Culture Center of Microorganisms.
Comparison of AFIAS and ICA with PCR and ELISA for the detection of rotavirus in clinical stool samples
| PCR & ELISA | Performance (95% confidence interval) | ||||||
|---|---|---|---|---|---|---|---|
| Positive | Negative | Sensitivity* (%, 95% CI) | Specificity* (%, 95% CI) | Overall agreement (%, 95% CI) | Kappa (95% CI) | ||
| AFIAS | Positive | 102 | 1 | 99.0 (94.7–99.8) | 99.0 (94.7–99.8) | 99.0 (96.5–99.7) | 0.98 (0.95–1) |
| Negative | 1 | 102 | |||||
| ICA | Positive | 101 | 0 | 98.1 (93.2–99.8) | 100 (96.5–100) | 99.0 (96.5–99.7) | 0.98 (0.95–1) |
| Negative | 2 | 103 | |||||
*Sensitivity and specificity were calculated considering that samples positive by both PCR and ELISA were “true positive,” and samples negative by both methods were “true negative.”
Abbreviations: CI, confidence interval; AFIAS, Automated Fluorescent Immunoassay System; ICA, immunochromatographic assay.
Discrepant results among AFIAS, ICA, PCR, and ELISA for the detection of rotavirus in clinical stool samples
| No. case | AFIAS (COI*) | ICA | PCR | ELISA (OD†) | Genotype |
|---|---|---|---|---|---|
| 1 | Positive (24.03) | Negative | Positive | Positive (0.290) | G2P[4] |
| 2 | Negative (0.64) | Negative | Positive | Positive (0.507) | G1P[8] |
| 3 | Positive (7.21) | Negative | Negative | Negative (0.022) | - |
*The COI result was interpreted as “positive” (COI≥1.0) or “negative” (COI<1.0); †Cut-off value of ELISA: OD of negative control+0.15.
Abbreviations: AFIAS, Automated Fluorescent Immunoassay System; COI, cut-off index; ICA, immunochromatographic assay; OD, optical density.
Genotype detectability of AFIAS and ICA
| Genotype | Samples (N) | AFIAS positive samples, N (%) | COI of AFIAS positive samples (Mean ± SD) | ICA positive samples, N (%) |
|---|---|---|---|---|
| G2P[4] | 33 | 33 (100) | 45.2 ± 10.0 | 32 (97.0) |
| G1P[8] | 16 | 15 (93.8) | 45.0 ± 10.7 | 15 (93.8) |
| G4P[6] | 12 | 12 (100) | 47.7 ± 8.7 | 12 (100) |
| G4P[x] | 11 | 11 (100) | 51.9 ± 9.2 | 11 (100) |
| G9P[8] | 7 | 7 (100) | 49.8 ± 10.0 | 7 (100) |
| G4P[8] | 5 | 5 (100) | 48.5 ± 9.3 | 5 (100) |
| G3P[8] | 6 | 6 (100) | 44.0 ± 10.7 | 6 (100) |
| G8P[8] | 3 | 3 (100) | 52.0 ± 7.5 | 3 (100) |
| G9P[4] | 3 | 3 (100) | 41.1 ± 30.8 | 3 (100) |
| GxP[4] | 3 | 3 (100) | 43.7 ± 17.1 | 3 (100) |
| G8P[4] | 1 | 1 (100) | 44.3 | 1 (100) |
| G2P[x] | 1 | 1 (100) | 46.2 | 1 (100) |
| GxP[8] | 1 | 1 (100) | 52.2 | 1 (100) |
| GxP[x] | 1 | 1 (100) | 48.9 | 1 (100) |
| Total | 103 | 102 (99.0) | 46.9 ± 10.7 | 101 (98.1) |
x indicated non-typed strain.
Abbreviations: AFIAS, Automated Fluorescent Immunoassay System; COI, cut-off index; ICA, immunochromatographic assay.
Repeatability and reproducibility of the AFIAS rotavirus assay
| Repeatability (N=10) | Between days (N=5×5) | Between lots (N=3×10) | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Mean (COI) | SD (COI) | CV% | Mean (COI) | SD (COI) | CV% | Mean (COI) | SD (COI) | CV% | |
| Negative | 0.05 | 0.01 | 12.5 | 0.05 | 0.01 | 12.6 | 0.05 | 0.01 | 20.8 |
| Weak positive | 4.48 | 0.16 | 3.6 | 4.64 | 0.16 | 3.6 | 0.47 | 0.02 | 3.9 |
| Positive | 13.17 | 0.47 | 3.6 | 12.91 | 0.50 | 3.9 | 13.23 | 0.62 | 4.7 |
Abbreviations: AFIAS, Automated Fluorescent Immunoassay System; COI, cut-off index.
Lower limit of detection of AFIAS for detecting G1P[8] and G4P[6] types
| G1P[8], Culture supernatant of ATCC VR-2018 | Copies/mL | AFIAS | AFIAS Positivity†, % | AFIAS mean (COI) | ICA | ELISA | ELISA (OD*) |
|---|---|---|---|---|---|---|---|
| 1 : 2 diluted | Positive | 100 (20/20) | 25.09 | Positive | Positive | > 3.500 | |
| 1 : 4 diluted | Positive | 100 (20/20) | 24.78 | Positive | Positive | > 3.500 | |
| 1 : 8 diluted | Positive | 100 (20/20) | 20.72 | Positive | Positive | > 3.500 | |
| 1 : 16 diluted | 5.51 × 105 | Positive | 100 (20/20) | 10.43 | Positive | 2.589 | |
| 1 : 32 diluted | Positive | 100 (20/20) | 5.13 | Negative | Positive | 1.506 | |
| 1 : 64 diluted | Positive | 100 (20/20) | 2.57 | Negative | Positive | 0.752 | |
| 1 : 128 diluted | 6.88 × 104 | Negative | |||||
| 1 : 256 diluted | Negative | 0 (0/20) | 0.73 | Negative | Negative | 0.107 | |
| 1 : 512 diluted | Negative | 0 (0/20) | 0.32 | Negative | Negative | 0.061 | |
| Negative (saline) | Negative | 0 (0/20) | 0.21 | Negative | Negative | 0.067 |
*Cut-off value of ELISA: OD of negative control +0.15; †Positivity: N of positive samples/Total N of tested samples.
Abbreviations: AFIAS, Automated Fluorescent Immunoassay System; ATCC, American Type Culture Collection; COI, cut-off index; ICA, immunochromatographic assay; OD, optical density.