Literature DB >> 30208290

Chromosome Dynamics in Response to DNA Damage.

Andrew Seeber1,2,3, Michael H Hauer1,2, Susan M Gasser1,2.   

Abstract

Recent advances in both the technologies used to measure chromatin movement and the biophysical analysis used to model them have yielded a fuller understanding of chromatin dynamics and the polymer structure that underlies it. Changes in nucleosome packing, checkpoint kinase activation, the cell cycle, chromosomal tethers, and external forces acting on nuclei in response to external and internal stimuli can alter the basal mobility of DNA in interphase nuclei of yeast or mammalian cells. Although chromatin movement is assumed to be necessary for many DNA-based processes, including gene activation by distal enhancer-promoter interaction or sequence-based homology searches during double-strand break repair, experimental evidence supporting an essential role in these activities is sparse. Nonetheless, high-resolution tracking of chromatin dynamics has led to instructive models of the higher-order folding and flexibility of the chromatin polymer. Key regulators of chromatin motion in physiological conditions or after damage induction are reviewed here.

Entities:  

Keywords:  DNA damage; DNA damage response; chromatin; chromatin mobility; chromosome dynamics; homology search; mean-squared displacement

Mesh:

Substances:

Year:  2018        PMID: 30208290     DOI: 10.1146/annurev-genet-120417-031334

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  21 in total

1.  Dynamic Processing of Displacement Loops during Recombinational DNA Repair.

Authors:  Aurèle Piazza; Shanaya Shital Shah; William Douglass Wright; Steven K Gore; Romain Koszul; Wolf-Dietrich Heyer
Journal:  Mol Cell       Date:  2019-02-05       Impact factor: 17.970

2.  Dynamics as a cause for the nanoscale organization of the genome.

Authors:  Roman Barth; Genevieve Fourel; Haitham A Shaban
Journal:  Nucleus       Date:  2020-01-01       Impact factor: 4.197

3.  Structural and Dynamical Signatures of Local DNA Damage in Live Cells.

Authors:  Jonah A Eaton; Alexandra Zidovska
Journal:  Biophys J       Date:  2019-11-13       Impact factor: 4.033

Review 4.  Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields.

Authors:  Andrews Akwasi Agbleke; Assaf Amitai; Jason D Buenrostro; Aditi Chakrabarti; Lingluo Chu; Anders S Hansen; Kristen M Koenig; Ajay S Labade; Sirui Liu; Tadasu Nozaki; Sergey Ovchinnikov; Andrew Seeber; Haitham A Shaban; Jan-Hendrik Spille; Andrew D Stephens; Jun-Han Su; Dushan Wadduwage
Journal:  Mol Cell       Date:  2020-08-07       Impact factor: 17.970

5.  Modified chromosome structure caused by phosphomimetic H2A modulates the DNA damage response by increasing chromatin mobility in yeast.

Authors:  Fabiola García Fernández; Brenda Lemos; Yasmine Khalil; Renaud Batrin; James E Haber; Emmanuelle Fabre
Journal:  J Cell Sci       Date:  2021-03-29       Impact factor: 5.285

Review 6.  Parsing the Functional Impact of Noncoding Genetic Variants in the Brain Epigenome.

Authors:  Samuel K Powell; Callan O'Shea; Kristen J Brennand; Schahram Akbarian
Journal:  Biol Psychiatry       Date:  2020-10-03       Impact factor: 13.382

7.  Nuclear F-actin counteracts nuclear deformation and promotes fork repair during replication stress.

Authors:  Noa Lamm; Mark N Read; Max Nobis; David Van Ly; Scott G Page; V Pragathi Masamsetti; Paul Timpson; Maté Biro; Anthony J Cesare
Journal:  Nat Cell Biol       Date:  2020-11-30       Impact factor: 28.824

8.  Mechanism of Long-Range Chromosome Motion Triggered by Gene Activation.

Authors:  Anqi Wang; Janhavi A Kolhe; Nate Gioacchini; Imke Baade; William M Brieher; Craig L Peterson; Brian C Freeman
Journal:  Dev Cell       Date:  2020-01-02       Impact factor: 12.270

9.  Systems Cytogenomics: Are We Ready Yet?

Authors:  Ivan Y Iourov; Svetlana G Vorsanova; Yuri B Yurov
Journal:  Curr Genomics       Date:  2021-02       Impact factor: 2.236

10.  ANCHOR: A Technical Approach to Monitor Single-Copy Locus Localization in Planta.

Authors:  Anis Meschichi; Mathieu Ingouff; Claire Picart; Marie Mirouze; Sophie Desset; Franck Gallardo; Kerstin Bystricky; Nathalie Picault; Stefanie Rosa; Frédéric Pontvianne
Journal:  Front Plant Sci       Date:  2021-07-06       Impact factor: 5.753

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