Literature DB >> 30188534

A case of mistaken identity.

Ruth E Hanna1, John G Doench1.   

Abstract

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Year:  2018        PMID： 30188534     DOI： 10.1038/nbt.4208

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  28 in total

1.  DNA recombination during PCR.

Authors:  A Meyerhans; J P Vartanian; S Wain-Hobson
Journal:  Nucleic Acids Res       Date:  1990-04-11       Impact factor: 16.971

2.  Computational correction of index switching in multiplexed sequencing libraries.

Authors:  Anton J M Larsson; Geoff Stanley; Rahul Sinha; Irving L Weissman; Rickard Sandberg
Journal:  Nat Methods       Date:  2018-04-27       Impact factor: 28.547

3.  Genetic interaction mapping in mammalian cells using CRISPR interference.

Authors:  Dan Du; Assen Roguev; David E Gordon; Meng Chen; Si-Han Chen; Michael Shales; John Paul Shen; Trey Ideker; Prashant Mali; Lei S Qi; Nevan J Krogan
Journal:  Nat Methods       Date:  2017-05-08       Impact factor: 28.547

4.  A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response.

Authors:  Britt Adamson; Thomas M Norman; Marco Jost; Min Y Cho; James K Nuñez; Yuwen Chen; Jacqueline E Villalta; Luke A Gilbert; Max A Horlbeck; Marco Y Hein; Ryan A Pak; Andrew N Gray; Carol A Gross; Atray Dixit; Oren Parnas; Aviv Regev; Jonathan S Weissman
Journal:  Cell       Date:  2016-12-15       Impact factor: 41.582

5.  Sources of Error in Mammalian Genetic Screens.

Authors:  Laura Magill Sack; Teresa Davoli; Qikai Xu; Mamie Z Li; Stephen J Elledge
Journal:  G3 (Bethesda)       Date:  2016-09-08       Impact factor: 3.154

6.  Combinatorial CRISPR-Cas9 screens for de novo mapping of genetic interactions.

Authors:  John Paul Shen; Dongxin Zhao; Roman Sasik; Jens Luebeck; Amanda Birmingham; Ana Bojorquez-Gomez; Katherine Licon; Kristin Klepper; Daniel Pekin; Alex N Beckett; Kyle Salinas Sanchez; Alex Thomas; Chih-Chung Kuo; Dan Du; Assen Roguev; Nathan E Lewis; Aaron N Chang; Jason F Kreisberg; Nevan Krogan; Lei Qi; Trey Ideker; Prashant Mali
Journal:  Nat Methods       Date:  2017-03-20       Impact factor: 28.547

7.  Pooled CRISPR screening with single-cell transcriptome readout.

Authors:  André F Rendeiro; Christian Schmidl; Paul Datlinger; Thomas Krausgruber; Peter Traxler; Johanna Klughammer; Linda C Schuster; Amelie Kuchler; Donat Alpar; Christoph Bock
Journal:  Nat Methods       Date:  2017-01-18       Impact factor: 28.547

8.  Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms.

Authors:  Maura Costello; Mark Fleharty; Justin Abreu; Yossi Farjoun; Steven Ferriera; Laurie Holmes; Brian Granger; Lisa Green; Tom Howd; Tamara Mason; Gina Vicente; Michael Dasilva; Wendy Brodeur; Timothy DeSmet; Sheila Dodge; Niall J Lennon; Stacey Gabriel
Journal:  BMC Genomics       Date:  2018-05-08       Impact factor: 3.969

9.  On the design of CRISPR-based single-cell molecular screens.

Authors:  Andrew J Hill; José L McFaline-Figueroa; Lea M Starita; Molly J Gasperini; Kenneth A Matreyek; Jonathan Packer; Dana Jackson; Jay Shendure; Cole Trapnell
Journal:  Nat Methods       Date:  2018-02-19       Impact factor: 28.547

10.  Detection and removal of barcode swapping in single-cell RNA-seq data.

Authors:  Jonathan A Griffiths; Arianne C Richard; Karsten Bach; Aaron T L Lun; John C Marioni
Journal:  Nat Commun       Date:  2018-07-10       Impact factor: 14.919
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  7 in total

Review 1.  Tutorial: design and execution of CRISPR in vivo screens.

Authors:  Christian J Braun; Andrés Carbonell Adames; Dieter Saur; Roland Rad
Journal:  Nat Protoc       Date:  2022-07-15       Impact factor: 17.021

2.  Genetic interaction mapping and exon-resolution functional genomics with a hybrid Cas9-Cas12a platform.

Authors:  Thomas Gonatopoulos-Pournatzis; Michael Aregger; Kevin R Brown; Shaghayegh Farhangmehr; Ulrich Braunschweig; Henry N Ward; Kevin C H Ha; Alexander Weiss; Maximilian Billmann; Tanja Durbic; Chad L Myers; Benjamin J Blencowe; Jason Moffat
Journal:  Nat Biotechnol       Date:  2020-03-16       Impact factor: 54.908

3.  Pooled Knockin Targeting for Genome Engineering of Cellular Immunotherapies.

Authors:  Theodore L Roth; P Jonathan Li; Franziska Blaeschke; Jasper F Nies; Ryan Apathy; Cody Mowery; Ruby Yu; Michelle L T Nguyen; Youjin Lee; Anna Truong; Joseph Hiatt; David Wu; David N Nguyen; Daniel Goodman; Jeffrey A Bluestone; Chun Jimmie Ye; Kole Roybal; Eric Shifrut; Alexander Marson
Journal:  Cell       Date:  2020-04-16       Impact factor: 41.582

4.  Measuring sequencer size bias using REcount: a novel method for highly accurate Illumina sequencing-based quantification.

Authors:  Daryl M Gohl; Alessandro Magli; John Garbe; Aaron Becker; Darrell M Johnson; Shea Anderson; Benjamin Auch; Bradley Billstein; Elyse Froehling; Shana L McDevitt; Kenneth B Beckman
Journal:  Genome Biol       Date:  2019-04-29       Impact factor: 13.583

5.  Tracing cellular heterogeneity in pooled genetic screens via multi-level barcoding.

Authors:  Michael Boettcher; Sergio Covarrubias; Anne Biton; James Blau; Haopeng Wang; Noah Zaitlen; Michael T McManus
Journal:  BMC Genomics       Date:  2019-02-06       Impact factor: 3.969

Review 6.  Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance.

Authors:  Alexander M Piper; Jana Batovska; Noel O I Cogan; John Weiss; John Paul Cunningham; Brendan C Rodoni; Mark J Blacket
Journal:  Gigascience       Date:  2019-08-01       Impact factor: 6.524

7.  Optimization of AsCas12a for combinatorial genetic screens in human cells.

Authors:  Peter C DeWeirdt; Kendall R Sanson; Annabel K Sangree; Mudra Hegde; Ruth E Hanna; Marissa N Feeley; Audrey L Griffith; Teng Teng; Samantha M Borys; Christine Strand; J Keith Joung; Benjamin P Kleinstiver; Xuewen Pan; Alan Huang; John G Doench
Journal:  Nat Biotechnol       Date:  2020-07-13       Impact factor: 54.908
  7 in total

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