Literature DB >> 29702636

Computational correction of index switching in multiplexed sequencing libraries.

Anton J M Larsson1, Geoff Stanley2, Rahul Sinha3, Irving L Weissman3, Rickard Sandberg1.   

Abstract

Mesh:

Year:  2018        PMID: 29702636     DOI: 10.1038/nmeth.4666

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


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2.  Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes.

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1.  A case of mistaken identity.

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2.  Endosymbiotic Rickettsiella causes cytoplasmic incompatibility in a spider host.

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Journal:  Proc Biol Sci       Date:  2020-07-08       Impact factor: 5.349

3.  Mapping Replication Timing in Single Mammalian Cells.

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4.  Consistent and correctable bias in metagenomic sequencing experiments.

Authors:  Michael R McLaren; Amy D Willis; Benjamin J Callahan
Journal:  Elife       Date:  2019-09-10       Impact factor: 8.140

5.  Low-complexity and highly robust barcodes for error-rich single molecular sequencing.

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6.  Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data.

Authors:  Nicole M Davis; Diana M Proctor; Susan P Holmes; David A Relman; Benjamin J Callahan
Journal:  Microbiome       Date:  2018-12-17       Impact factor: 14.650

7.  Issues and current standards of controls in microbiome research.

Authors:  Bastian V H Hornung; Romy D Zwittink; Ed J Kuijper
Journal:  FEMS Microbiol Ecol       Date:  2019-05-01       Impact factor: 4.194

8.  PhyloToL: A Taxon/Gene-Rich Phylogenomic Pipeline to Explore Genome Evolution of Diverse Eukaryotes.

Authors:  Mario A Cerón-Romero; Xyrus X Maurer-Alcalá; Jean-David Grattepanche; Ying Yan; Miguel M Fonseca; L A Katz
Journal:  Mol Biol Evol       Date:  2019-08-01       Impact factor: 16.240

9.  Detection and removal of barcode swapping in single-cell RNA-seq data.

Authors:  Jonathan A Griffiths; Arianne C Richard; Karsten Bach; Aaron T L Lun; John C Marioni
Journal:  Nat Commun       Date:  2018-07-10       Impact factor: 14.919

Review 10.  High-throughput identification and diagnostics of pathogens and pests: Overview and practical recommendations.

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