| Literature DB >> 30186260 |
Jiansheng Huang1,2,3, Hui Ding1,2,3, Yang Shi1,2,3, Yunan Zhao1,2,3, Xiaolei Hu1,2,3, Jianmin Ren1,2,3, Guiying Huang1,2,3, Rongzhen Wu1,2,3, Zhigang Zhao1,2,3.
Abstract
The wide spread of Klebsiella pneumoniae carbapenemase (KPC)-producing Enterobacteriaceae is great threat to public health in China. Plasmids are among the major factors mediating blaKPC gene dissemination. A total of 156 carbapenem-resistant Enterobacteriaceae (CRE) isolates were identified in a tertiary hospital in China. Six KPC-producing isolates, namely, E. coli (n = 2), E. asburiae (n = 1), C. freundii (n = 1), C. portucalensis (n = 1), and C. koseri (n = 1), tested positive for the pCKPC18-1-like untypeable plasmid, which was described recently in C. freundii. All 6 plasmids could be easily transferred into E. coli by chemical transformation or conjugation and were confirmed by sequencing to harbor blaKPC-2. Multilocus PCRs and EcoRI-RFLP revealed that the 6 untypeable plasmids belonged to 2 isoforms. High-throughput sequencing of representative plasmids (pCP40 and pEC86) led to the identification of 2 plasmids that shared the common backbone genes repA, DnaJ, StpA, and yafB, which were characteristic of the untypeable plasmid, and had similar blaKPC-2 genetic contexts of the Tn3-Tn4401 chimera. Nucleotide comparison revealed high sequence identity of the 2 plasmids with previously reported blaKPC-2-carrying untypeable plasmids. In particular, the pCP40 plasmid from C. portucalensis and the pHS062105-3 plasmid from K. pneumoniae differed by only 20 single-nucleotide polymorphisms (SNPs). To the best of our knowledge, this is the first report of a blaKPC-harboring untypeable plasmid spread into E. coli, E. asburiae, and C. koseri strains in China.Entities:
Keywords: Enterobacteriaceae; blaKPC; carbapenemase; dissemination; untypeable plasmid
Year: 2018 PMID: 30186260 PMCID: PMC6111213 DOI: 10.3389/fmicb.2018.01938
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Multilocus-PCR primers used in this study.
| UTF | TGCATCGATACGTTCCTGCA | 841 | pCKPC18-1 and pFOS18 | |
| UTR | ACTCGCTAGCATGGAACATC | |||
| KPCF | GCTACACCTAGCTCCACCTTC | 989 | Shen et al., | |
| KPCR | ACAGTGGTTGGTAATCCATGC | |||
| CH1F | GCGTTGAATCCACGTATTGG | 752 | pCKPC18-1 | |
| CH1R | TATCATGCCCGTATACTCGC | |||
| CH2F | GCACCTTGTGGTGAAGAACC | 779 | pCKPC18-1 | |
| CH2R | TGTACGGCATTAGCGGCATC | |||
| CH3F | CTACGTTCGTCAATTCACTG | 772 | pCKPC18-1 | |
| CH3R | AGGTGTAGATCACCAACGCG | |||
| Tn | CH4F | CAGGTAGTCGTCGAAGTCGC | 815 | pCKPC18-1 |
| CH4R | CCAACTCTCGGCACATGCTG | |||
| Tn | CH5F | TCTGTACCAAGCGACGCAGG | 762 | pCKPC18-1 |
| CH5R | CGGCCTCATGGTACATCTGG | |||
| CH4F | CAGGTAGTCGTCGAAGTCGC | 954 or 2558 | pCKPC18-1 and pFOS18 | |
| CH5R | CGGCCTCATGGTACATCTGG |
Antimicrobial susceptibilities of the six enterobacteriaceae and their transconjugants.
| EAK7 | ≥16 | R | ≥8 | R | ≥64 | R | 8 | R | ≥64 | R | ≥32 | R | ≥64 | R | 1 | S | 0.5 | S | ≤ 20 | S | ≥16 | R | ≥16 | R | ≥64 | R | S | |
| CP40 | ≥16 | R | ≥8 | R | 32 | R | ≥64 | R | ≥64 | R | ≥32 | R | ≥64 | R | 8 | R | 4 | R | ≤ 20 | S | ≤ 1 | S | ≤ 1 | S | ≤ 2 | S | S | |
| CK61 | 2 | I | 8 | R | 16 | R | 16 | R | 32 | R | ≥32 | R | ≥64 | R | 0.064 | S | 0.016 | S | ≤ 20 | S | 8 | R | ≤ 1 | S | ≤ 2 | S | S | |
| EC84 | 8 | R | ≥8 | R | ≥64 | R | ≥64 | R | ≥64 | R | ≥32 | R | ≥64 | R | ≥32 | R | ≥32 | R | ≥320 | R | ≥16 | R | 8 | I | ≤ 2 | S | S | |
| EC86 | 8 | R | ≥8 | R | ≥64 | R | ≥64 | R | ≥64 | R | ≥32 | R | ≥64 | R | ≥32 | R | ≥32 | R | ≥320 | R | ≥16 | R | ≥16 | R | 4 | S | S | |
| CF111 | ≥16 | R | ≥8 | R | ≥64 | R | 16 | R | ≥64 | R | ≥32 | R | ≥64 | R | 2 | S | 1 | I | ≥320 | R | ≥16 | R | ≥16 | R | ≥64 | R | S | |
| Tc-K7 | ≥16 | R | ≥8 | R | ≥64 | R | ≥64 | R | ≥64 | R | ≥32 | R | ≥64 | R | 0.064 | S | 0.016 | S | ≤ 20 | S | 4 | S | ≤ 1 | S | 4 | S | S | |
| Tc-40 | ≥16 | R | ≥8 | R | ≥64 | R | ≥64 | R | ≥64 | R | ≥32 | R | ≥64 | R | 0.008 | S | 0.008 | S | ≤ 20 | S | 2 | S | 2 | S | 4 | S | S | |
| Tc-61 | ≥16 | R | ≥8 | R | ≥64 | R | ≥64 | R | ≥64 | R | ≥32 | R | ≥64 | R | 0.064 | S | 0.016 | S | ≤ 20 | S | 4 | S | 2 | S | 4 | S | S | |
| Tc-84 | ≥16 | R | ≥8 | R | ≥64 | R | ≥64 | R | ≥64 | R | ≥32 | R | ≥64 | R | 0.016 | S | 0.008 | S | ≤ 20 | S | 2 | S | 2 | S | ≤ 2 | S | S | |
| Tc-86 | ≥16 | R | ≥8 | R | ≥64 | R | ≥64 | R | ≥64 | R | ≥32 | R | ≥64 | R | 0.016 | S | 0.008 | S | ≤ 20 | S | 2 | S | 2 | S | ≤ 2 | S | S | |
| Tc-111 | ≥16 | R | ≥8 | R | ≥64 | R | ≥64 | R | ≥64 | R | ≥32 | R | ≥64 | R | 0.008 | S | 0.008 | S | ≤ 20 | S | 4 | S | ≤ 1 | S | 4 | S | S | |
| J53 | ≤ 1 | S | ≤ 0.5 | S | ≤ 1 | S | ≤ 1 | S | ≤ 1 | S | 4 | S | ≤ 1 | S | 0.064 | S | 0.008 | S | ≤ 20 | S | ≤ 1 | S | ≤ 1 | S | ≤ 2 | S | S | |
| Trans1-T1 | ≤ 1 | S | ≤ 0.5 | S | ≤ 1 | S | ≤ 1 | S | ≤ 1 | S | 4 | S | ≤ 1 | S | 0.008 | S | 0.016 | S | ≤ 20 | S | ≤ 1 | S | ≤ 1 | S | ≤ 2 | S | S | |
| 25922 | ≤ 1 | S | ≤ 0.5 | S | ≤ 1 | S | ≤ 1 | S | ≤ 1 | S | 2 | S | ≤ 1 | S | 0.008 | S | 0.008 | S | ≤ 20 | S | ≤ 1 | S | ≤ 1 | S | ≤ 2 | S | S | |
Susceptibilities were determined by KB method and MICs (μg/mL) were obtained by VITEK2 compact system with AST-GN13 cards, the results were interpreted according to CLSI guidelines. Tc, transconjugants. J53, azide-resistant E. coli J53Az.
Figure 1Relatedness of the 6 untypeable plasmids. (A) Mutilocus-PCR results. Primers targeting the genes repA, blaKPC, TaxA, virB5, virB11, Tn1721-TnpA, Tn1721-TnpR, and repB were designed. Two profiles were obtained after evaluation of the amplicons by electrophoresis. The plasmids pEAK7, pCP40, pCK61, and pCF111 exhibited one pattern, while pEC84 and pEC86 exhibited a different pattern. (B) RFLP results. Fragments were separated by electrophoresis on a 1% agarose gel in 1 × TAE buffer. Two different patterns, one for the plasmids pEAK7, pCP40, pCK61, and pCF111 and another for pEC84 and pEC86, were obtained. EA, E. asburiae; CP, C. portucalensis; CF, C. freundii; CK, C. koseri; EC, E. coli; M, DNA marker.
Figure 2Comparative analysis of the blaKPC-harboring untypeable plasmids pFOS18 (KJ653815), pEC86 (MH328007), pKPC-ECN49 (KP726894), pHS062105-3 (KF623109), pP10159-3 (MF072963), pCP40 (MH328006), and pCKPC18-1 (CP022276). Light-blue shading denotes shared regions of homology in each adjacent plasmid. Notably, the type IV secretory pathway (VirB1-10) present in pKPC-ECN49, pHS062105-3, pP10159-3, pCP40, and pCKPC18-1 is absent in pFOS18 and pEC86. Open reading frames (ORFs) are depicted by arrows and are colored based on predicted gene function. Resistance genes are indicated with deep-blue arrows.