Literature DB >> 30158684

Cancer genetics, precision prevention and a call to action.

Clare Turnbull1,2,3,4, Amit Sud5, Richard S Houlston5.   

Abstract

More than 15 years have passed since the identification, through linkage, of 'first-wave' susceptibility genes for common cancers (BRCA1, BRCA2, MLH1 and MSH2). These genes have strong frequency-penetrance profiles, such that the associated clinical utility probably remains relevant regardless of the context of ascertainment. 'Second-wave' genes, not tractable by linkage, were subsequently identified by mutation screening of candidate genes (PALB2, ATM, CHEK2, BRIP1, RAD51C and RAD51D). Their innately weaker frequency-penetrance profiles have rendered delineation of cancer associations, risks and variant pathogenicity challenging, thereby compromising their clinical application. Early germline exome-sequencing endeavors for common cancers did not yield the long-anticipated slew of 'next-wave' genes but instead implied a highly polygenic genomic architecture requiring much larger experiments to make any substantive inroads into gene discovery. As such, the 'genetic economics' of frequency penetrance clearly indicates that focused identification of carriers of first-wave-gene mutations is most impactful for cancer control. With screening, prevention and early detection at the forefront of the cancer management agenda, we propose that the time is nigh for the initiation of national population-testing programs to identify carriers of first-wave gene mutation carriers. To fully deliver a precision prevention program, long-term, large-scale mutation studies that capture longitudinal clinical data and serial biosamples are required.

Entities:  

Year:  2018        PMID: 30158684      PMCID: PMC6420140          DOI: 10.1038/s41588-018-0202-0

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  110 in total

Review 1.  Genetic modifiers of cancer risk for BRCA1 and BRCA2 mutation carriers.

Authors:  R L Milne; A C Antoniou
Journal:  Ann Oncol       Date:  2011-01       Impact factor: 32.976

2.  Precision medicine meets public health: population screening for BRCA1 and BRCA2.

Authors:  Ephrat Levy-Lahad; Amnon Lahad; Mary-Claire King
Journal:  J Natl Cancer Inst       Date:  2014-12-30       Impact factor: 13.506

3.  RANK ligand as a potential target for breast cancer prevention in BRCA1-mutation carriers.

Authors:  Emma Nolan; François Vaillant; Daniel Branstetter; Bhupinder Pal; Göknur Giner; Lachlan Whitehead; Sheau W Lok; Gregory B Mann; Kathy Rohrbach; Li-Ya Huang; Rosalia Soriano; Gordon K Smyth; William C Dougall; Jane E Visvader; Geoffrey J Lindeman
Journal:  Nat Med       Date:  2016-06-20       Impact factor: 53.440

Review 4.  Architecture of inherited susceptibility to common cancer.

Authors:  Olivia Fletcher; Richard S Houlston
Journal:  Nat Rev Cancer       Date:  2010-05       Impact factor: 60.716

5.  Current detection rates and time-to-detection of all identifiable BRCA carriers in the Greater London population.

Authors:  Ranjit Manchanda; Oleg Blyuss; Faiza Gaba; Vladimir Sergeevich Gordeev; Chris Jacobs; Matthew Burnell; Carmen Gan; Rohan Taylor; Clare Turnbull; Rosa Legood; Alexey Zaikin; Antonis C Antoniou; Usha Menon; Ian Jacobs
Journal:  J Med Genet       Date:  2018-04-05       Impact factor: 6.318

6.  Translating Germline Cancer Risk into Precision Prevention.

Authors:  Matthew B Yurgelun; Georgia Chenevix-Trench; Scott M Lippman
Journal:  Cell       Date:  2017-02-09       Impact factor: 66.850

7.  PPM1D Mosaic Truncating Variants in Ovarian Cancer Cases May Be Treatment-Related Somatic Mutations.

Authors:  Paul D P Pharoah; Honglin Song; Ed Dicks; Maria P Intermaggio; Patricia Harrington; Caroline Baynes; Kathryn Alsop; Natalia Bogdanova; Mine S Cicek; Julie M Cunningham; Brooke L Fridley; Aleksandra Gentry-Maharaj; Peter Hillemanns; Shashi Lele; Jenny Lester; Valerie McGuire; Kirsten B Moysich; Samantha Poblete; Weiva Sieh; Lara Sucheston-Campbell; Martin Widschwendter; Alice S Whittemore; Thilo Dörk; Usha Menon; Kunle Odunsi; Ellen L Goode; Beth Y Karlan; David D Bowtell; Simon A Gayther; Susan J Ramus
Journal:  J Natl Cancer Inst       Date:  2016-01-27       Impact factor: 13.506

8.  Large-scale genotyping identifies 41 new loci associated with breast cancer risk.

Authors:  Kyriaki Michailidou; Per Hall; Anna Gonzalez-Neira; Maya Ghoussaini; Joe Dennis; Roger L Milne; Marjanka K Schmidt; Jenny Chang-Claude; Stig E Bojesen; Manjeet K Bolla; Qin Wang; Ed Dicks; Andrew Lee; Clare Turnbull; Nazneen Rahman; Olivia Fletcher; Julian Peto; Lorna Gibson; Isabel Dos Santos Silva; Heli Nevanlinna; Taru A Muranen; Kristiina Aittomäki; Carl Blomqvist; Kamila Czene; Astrid Irwanto; Jianjun Liu; Quinten Waisfisz; Hanne Meijers-Heijboer; Muriel Adank; Rob B van der Luijt; Rebecca Hein; Norbert Dahmen; Lars Beckman; Alfons Meindl; Rita K Schmutzler; Bertram Müller-Myhsok; Peter Lichtner; John L Hopper; Melissa C Southey; Enes Makalic; Daniel F Schmidt; Andre G Uitterlinden; Albert Hofman; David J Hunter; Stephen J Chanock; Daniel Vincent; François Bacot; Daniel C Tessier; Sander Canisius; Lodewyk F A Wessels; Christopher A Haiman; Mitul Shah; Robert Luben; Judith Brown; Craig Luccarini; Nils Schoof; Keith Humphreys; Jingmei Li; Børge G Nordestgaard; Sune F Nielsen; Henrik Flyger; Fergus J Couch; Xianshu Wang; Celine Vachon; Kristen N Stevens; Diether Lambrechts; Matthieu Moisse; Robert Paridaens; Marie-Rose Christiaens; Anja Rudolph; Stefan Nickels; Dieter Flesch-Janys; Nichola Johnson; Zoe Aitken; Kirsimari Aaltonen; Tuomas Heikkinen; Annegien Broeks; Laura J Van't Veer; C Ellen van der Schoot; Pascal Guénel; Thérèse Truong; Pierre Laurent-Puig; Florence Menegaux; Frederik Marme; Andreas Schneeweiss; Christof Sohn; Barbara Burwinkel; M Pilar Zamora; Jose Ignacio Arias Perez; Guillermo Pita; M Rosario Alonso; Angela Cox; Ian W Brock; Simon S Cross; Malcolm W R Reed; Elinor J Sawyer; Ian Tomlinson; Michael J Kerin; Nicola Miller; Brian E Henderson; Fredrick Schumacher; Loic Le Marchand; Irene L Andrulis; Julia A Knight; Gord Glendon; Anna Marie Mulligan; Annika Lindblom; Sara Margolin; Maartje J Hooning; Antoinette Hollestelle; Ans M W van den Ouweland; Agnes Jager; Quang M Bui; Jennifer Stone; Gillian S Dite; Carmel Apicella; Helen Tsimiklis; Graham G Giles; Gianluca Severi; Laura Baglietto; Peter A Fasching; Lothar Haeberle; Arif B Ekici; Matthias W Beckmann; Hermann Brenner; Heiko Müller; Volker Arndt; Christa Stegmaier; Anthony Swerdlow; Alan Ashworth; Nick Orr; Michael Jones; Jonine Figueroa; Jolanta Lissowska; Louise Brinton; Mark S Goldberg; France Labrèche; Martine Dumont; Robert Winqvist; Katri Pylkäs; Arja Jukkola-Vuorinen; Mervi Grip; Hiltrud Brauch; Ute Hamann; Thomas Brüning; Paolo Radice; Paolo Peterlongo; Siranoush Manoukian; Bernardo Bonanni; Peter Devilee; Rob A E M Tollenaar; Caroline Seynaeve; Christi J van Asperen; Anna Jakubowska; Jan Lubinski; Katarzyna Jaworska; Katarzyna Durda; Arto Mannermaa; Vesa Kataja; Veli-Matti Kosma; Jaana M Hartikainen; Natalia V Bogdanova; Natalia N Antonenkova; Thilo Dörk; Vessela N Kristensen; Hoda Anton-Culver; Susan Slager; Amanda E Toland; Stephen Edge; Florentia Fostira; Daehee Kang; Keun-Young Yoo; Dong-Young Noh; Keitaro Matsuo; Hidemi Ito; Hiroji Iwata; Aiko Sueta; Anna H Wu; Chiu-Chen Tseng; David Van Den Berg; Daniel O Stram; Xiao-Ou Shu; Wei Lu; Yu-Tang Gao; Hui Cai; Soo Hwang Teo; Cheng Har Yip; Sze Yee Phuah; Belinda K Cornes; Mikael Hartman; Hui Miao; Wei Yen Lim; Jen-Hwei Sng; Kenneth Muir; Artitaya Lophatananon; Sarah Stewart-Brown; Pornthep Siriwanarangsan; Chen-Yang Shen; Chia-Ni Hsiung; Pei-Ei Wu; Shian-Ling Ding; Suleeporn Sangrajrang; Valerie Gaborieau; Paul Brennan; James McKay; William J Blot; Lisa B Signorello; Qiuyin Cai; Wei Zheng; Sandra Deming-Halverson; Martha Shrubsole; Jirong Long; Jacques Simard; Montse Garcia-Closas; Paul D P Pharoah; Georgia Chenevix-Trench; Alison M Dunning; Javier Benitez; Douglas F Easton
Journal:  Nat Genet       Date:  2013-04       Impact factor: 38.330

9.  Mosaic PPM1D mutations are associated with predisposition to breast and ovarian cancer.

Authors:  Elise Ruark; Katie Snape; Peter Humburg; Chey Loveday; Ilirjana Bajrami; Rachel Brough; Daniel Nava Rodrigues; Anthony Renwick; Sheila Seal; Emma Ramsay; Silvana Del Vecchio Duarte; Manuel A Rivas; Margaret Warren-Perry; Anna Zachariou; Adriana Campion-Flora; Sandra Hanks; Anne Murray; Naser Ansari Pour; Jenny Douglas; Lorna Gregory; Andrew Rimmer; Neil M Walker; Tsun-Po Yang; Julian W Adlard; Julian Barwell; Jonathan Berg; Angela F Brady; Carole Brewer; Glen Brice; Cyril Chapman; Jackie Cook; Rosemarie Davidson; Alan Donaldson; Fiona Douglas; Diana Eccles; D Gareth Evans; Lynn Greenhalgh; Alex Henderson; Louise Izatt; Ajith Kumar; Fiona Lalloo; Zosia Miedzybrodzka; Patrick J Morrison; Joan Paterson; Mary Porteous; Mark T Rogers; Susan Shanley; Lisa Walker; Martin Gore; Richard Houlston; Matthew A Brown; Mark J Caufield; Panagiotis Deloukas; Mark I McCarthy; John A Todd; Clare Turnbull; Jorge S Reis-Filho; Alan Ashworth; Antonis C Antoniou; Christopher J Lord; Peter Donnelly; Nazneen Rahman
Journal:  Nature       Date:  2012-12-16       Impact factor: 49.962

10.  ClinVar: public archive of relationships among sequence variation and human phenotype.

Authors:  Melissa J Landrum; Jennifer M Lee; George R Riley; Wonhee Jang; Wendy S Rubinstein; Deanna M Church; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2013-11-14       Impact factor: 16.971

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  38 in total

1.  Validation of a Semiautomated Natural Language Processing-Based Procedure for Meta-Analysis of Cancer Susceptibility Gene Penetrance.

Authors:  Zhengyi Deng; Kanhua Yin; Yujia Bao; Victor Diego Armengol; Cathy Wang; Ankur Tiwari; Regina Barzilay; Giovanni Parmigiani; Danielle Braun; Kevin S Hughes
Journal:  JCO Clin Cancer Inform       Date:  2019-08

Review 2.  Peroxisome proliferator-activated receptor gamma and BRCA1.

Authors:  Priscilla A Furth
Journal:  Endocr Relat Cancer       Date:  2019-02       Impact factor: 5.678

Review 3.  The monogenic basis of human tuberculosis.

Authors:  Stephanie Boisson-Dupuis
Journal:  Hum Genet       Date:  2020-02-13       Impact factor: 4.132

4.  Analysis of 153 115 patients with hematological malignancies refines the spectrum of familial risk.

Authors:  Amit Sud; Subhayan Chattopadhyay; Hauke Thomsen; Kristina Sundquist; Jan Sundquist; Richard S Houlston; Kari Hemminki
Journal:  Blood       Date:  2019-08-08       Impact factor: 22.113

5.  Interest in genetic testing and risk-reducing behavioral changes: results from a community health assessment in New York City.

Authors:  Sarah M Lima; Meaghan Nazareth; Karen M Schmitt; Andria Reyes; Elaine Fleck; Gary K Schwartz; Mary Beth Terry; Grace C Hillyer
Journal:  J Community Genet       Date:  2022-10-13

Review 6.  Single-cell profiling of tumour evolution in multiple myeloma - opportunities for precision medicine.

Authors:  Ankit K Dutta; Jean-Baptiste Alberge; Romanos Sklavenitis-Pistofidis; Elizabeth D Lightbody; Gad Getz; Irene M Ghobrial
Journal:  Nat Rev Clin Oncol       Date:  2022-01-11       Impact factor: 65.011

7.  Will polygenic risk scores for cancer ever be clinically useful?

Authors:  Amit Sud; Clare Turnbull; Richard Houlston
Journal:  NPJ Precis Oncol       Date:  2021-05-21

Review 8.  Understanding the Clinical Implications of Low Penetrant Genes and Breast Cancer Risk.

Authors:  Anusha Vaidyanathan; Virginia Kaklamani
Journal:  Curr Treat Options Oncol       Date:  2021-08-23

9.  Implementation considerations for offering personal genomic risk information to the public: a qualitative study.

Authors:  Amelia K Smit; Gillian Reyes-Marcelino; Louise Keogh; Kate Dunlop; Ainsley J Newson; Anne E Cust
Journal:  BMC Public Health       Date:  2020-06-29       Impact factor: 3.295

10.  Advancing precision public health using human genomics: examples from the field and future research opportunities.

Authors:  Megan C Roberts; Alison E Fohner; Latrice Landry; Dana Lee Olstad; Amelia K Smit; Erin Turbitt; Caitlin G Allen
Journal:  Genome Med       Date:  2021-06-01       Impact factor: 11.117

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