Literature DB >> 30158682

COSMIC-3D provides structural perspectives on cancer genetics for drug discovery.

Harry C Jubb1,2, Harpreet K Saini3, Marcel L Verdonk3, Simon A Forbes4.   

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Year:  2018        PMID： 30158682      PMCID： PMC6159874          DOI： 10.1038/s41588-018-0214-9

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


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  9 in total

Review 1.  A census of human cancer genes.

Authors:  P Andrew Futreal; Lachlan Coin; Mhairi Marshall; Thomas Down; Timothy Hubbard; Richard Wooster; Nazneen Rahman; Michael R Stratton
Journal:  Nat Rev Cancer       Date:  2004-03       Impact factor: 60.716

Review 2.  Activating and resistance mutations of EGFR in non-small-cell lung cancer: role in clinical response to EGFR tyrosine kinase inhibitors.

Authors:  A F Gazdar
Journal:  Oncogene       Date:  2009-08       Impact factor: 9.867

3.  Impact of common epidermal growth factor receptor and HER2 variants on receptor activity and inhibition by lapatinib.

Authors:  Tona M Gilmer; Louann Cable; Krystal Alligood; David Rusnak; Glenn Spehar; Kathleen T Gallagher; Ermias Woldu; H Luke Carter; Anne T Truesdale; Lisa Shewchuk; Edgar R Wood
Journal:  Cancer Res       Date:  2008-01-15       Impact factor: 12.701

4.  NGL Viewer: a web application for molecular visualization.

Authors:  Alexander S Rose; Peter W Hildebrand
Journal:  Nucleic Acids Res       Date:  2015-04-29       Impact factor: 16.971

5.  COSMIC: somatic cancer genetics at high-resolution.

Authors:  Simon A Forbes; David Beare; Harry Boutselakis; Sally Bamford; Nidhi Bindal; John Tate; Charlotte G Cole; Sari Ward; Elisabeth Dawson; Laura Ponting; Raymund Stefancsik; Bhavana Harsha; Chai Yin Kok; Mingming Jia; Harry Jubb; Zbyslaw Sondka; Sam Thompson; Tisham De; Peter J Campbell
Journal:  Nucleic Acids Res       Date:  2016-11-28       Impact factor: 16.971

6.  UniProt: the universal protein knowledgebase.

Authors: 
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

7.  Fpocket: an open source platform for ligand pocket detection.

Authors:  Vincent Le Guilloux; Peter Schmidtke; Pierre Tuffery
Journal:  BMC Bioinformatics       Date:  2009-06-02       Impact factor: 3.169

Review 8.  The archiving and dissemination of biological structure data.

Authors:  Helen M Berman; Stephen K Burley; Gerard J Kleywegt; John L Markley; Haruki Nakamura; Sameer Velankar
Journal:  Curr Opin Struct Biol       Date:  2016-07-21       Impact factor: 6.809

9.  SIFTS: Structure Integration with Function, Taxonomy and Sequences resource.

Authors:  Sameer Velankar; José M Dana; Julius Jacobsen; Glen van Ginkel; Paul J Gane; Jie Luo; Thomas J Oldfield; Claire O'Donovan; Maria-Jesus Martin; Gerard J Kleywegt
Journal:  Nucleic Acids Res       Date:  2012-11-29       Impact factor: 16.971
  9 in total
  13 in total

Review 1.  Online informatics resources to facilitate cancer target and chemical probe discovery.

Authors:  Xuan Yang; Haian Fu; Andrey A Ivanov
Journal:  RSC Med Chem       Date:  2020-04-09

2.  DIPG Harbors Alterations Targetable by MEK Inhibitors, with Acquired Resistance Mechanisms Overcome by Combinatorial Inhibition.

Authors:  Elisa Izquierdo; Diana M Carvalho; Alan Mackay; Sara Temelso; Jessica K R Boult; Giulia Pericoli; Elisabet Fernandez; Molina Das; Valeria Molinari; Yura Grabovska; Rebecca F Rogers; Maria Antonietta Ajmone-Cat; Paula Z Proszek; Mark Stubbs; Sarita Depani; Patricia O'Hare; Lu Yu; Georgia Roumelioti; Jyoti S Choudhary; Matthew Clarke; Amy R Fairchild; Thomas S Jacques; Richard G Grundy; Lisa Howell; Susan Picton; Jenny Adamski; Shaun Wilson; Juliet C Gray; Bassel Zebian; Lynley V Marshall; Fernando Carceller; Jacques Grill; Maria Vinci; Simon P Robinson; Michael Hubank; Darren Hargrave; Chris Jones
Journal:  Cancer Discov       Date:  2022-03-01       Impact factor: 39.397

3.  Structure-based classification of EGFR mutations informs inhibitor selection for lung cancer therapy.

Authors:  Paul Yenerall; Ralf Kittler; John Minna
Journal:  Cancer Cell       Date:  2021-11-08       Impact factor: 38.585

4.  MISCAST: MIssense variant to protein StruCture Analysis web SuiTe.

Authors:  Sumaiya Iqbal; David Hoksza; Eduardo Pérez-Palma; Patrick May; Jakob B Jespersen; Shehab S Ahmed; Zaara T Rifat; Henrike O Heyne; M Sohel Rahman; Jeffrey R Cottrell; Florence F Wagner; Mark J Daly; Arthur J Campbell; Dennis Lal
Journal:  Nucleic Acids Res       Date:  2020-07-02       Impact factor: 16.971

5.  PhyreRisk: A Dynamic Web Application to Bridge Genomics, Proteomics and 3D Structural Data to Guide Interpretation of Human Genetic Variants.

Authors:  Tochukwu C Ofoegbu; Alessia David; Lawrence A Kelley; Stefans Mezulis; Suhail A Islam; Sophia F Mersmann; Léonie Strömich; Ilya A Vakser; Richard S Houlston; Michael J E Sternberg
Journal:  J Mol Biol       Date:  2019-05-07       Impact factor: 5.469

6.  Cancer3D 2.0: interactive analysis of 3D patterns of cancer mutations in cancer subsets.

Authors:  Mayya Sedova; Mallika Iyer; Zhanwen Li; Lukasz Jaroszewski; Kai W Post; Thomas Hrabe; Eduard Porta-Pardo; Adam Godzik
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

7.  Swiss-PO: a new tool to analyze the impact of mutations on protein three-dimensional structures for precision oncology.

Authors:  Fanny S Krebs; Vincent Zoete; Maxence Trottet; Timothée Pouchon; Christophe Bovigny; Olivier Michielin
Journal:  NPJ Precis Oncol       Date:  2021-03-18

Review 8.  Secondary Resistant Mutations to Small Molecule Inhibitors in Cancer Cells.

Authors:  Abdulaziz B Hamid; Ruben C Petreaca
Journal:  Cancers (Basel)       Date:  2020-04-09       Impact factor: 6.639

Review 9.  Integration of Online Omics-Data Resources for Cancer Research.

Authors:  Tonmoy Das; Geoffroy Andrieux; Musaddeque Ahmed; Sajib Chakraborty
Journal:  Front Genet       Date:  2020-10-23       Impact factor: 4.599

10.  COSMIC: the Catalogue Of Somatic Mutations In Cancer.

Authors:  John G Tate; Sally Bamford; Harry C Jubb; Zbyslaw Sondka; David M Beare; Nidhi Bindal; Harry Boutselakis; Charlotte G Cole; Celestino Creatore; Elisabeth Dawson; Peter Fish; Bhavana Harsha; Charlie Hathaway; Steve C Jupe; Chai Yin Kok; Kate Noble; Laura Ponting; Christopher C Ramshaw; Claire E Rye; Helen E Speedy; Ray Stefancsik; Sam L Thompson; Shicai Wang; Sari Ward; Peter J Campbell; Simon A Forbes
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971
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