Literature DB >> 33479663

Online informatics resources to facilitate cancer target and chemical probe discovery.

Xuan Yang1,2, Haian Fu1,2,3,4, Andrey A Ivanov1,2,3.   

Abstract

The advances in cancer genomics, chemical biology, high-throughput screening technologies, and synthetic medicinal chemistry have tremendously expanded the biological space of cancer targets and chemical space of bioactive small molecules to interrogate oncogenic signaling. To explore and leverage these exponentially growing cancer-associated data, a great number of computational tools, databases, and algorithms have been developed. This review summarizes recent cancer-related web resources that allow researchers working at the interface of chemical, biological, and cancer genomics fields to integrate clinical and genomics data for specific actionable targets and selective chemical compounds to facilitate cancer therapeutic discovery. This journal is © The Royal Society of Chemistry 2020.

Entities:  

Year:  2020        PMID: 33479663      PMCID: PMC7429978          DOI: 10.1039/d0md00012d

Source DB:  PubMed          Journal:  RSC Med Chem        ISSN: 2632-8682


  75 in total

1.  Genome-Wide Interrogation of Human Cancers Identifies EGLN1 Dependency in Clear Cell Ovarian Cancers.

Authors:  Colles Price; Stanley Gill; Zandra V Ho; Shawn M Davidson; Erin Merkel; James M McFarland; Lisa Leung; Andrew Tang; Maria Kost-Alimova; Aviad Tsherniak; Oliver Jonas; Francisca Vazquez; William C Hahn
Journal:  Cancer Res       Date:  2019-03-21       Impact factor: 12.701

2.  HTiP: High-Throughput Immunomodulator Phenotypic Screening Platform to Reveal IAP Antagonists as Anti-cancer Immune Enhancers.

Authors:  Xiulei Mo; Cong Tang; Qiankun Niu; Tingxuan Ma; Yuhong Du; Haian Fu
Journal:  Cell Chem Biol       Date:  2019-01-10       Impact factor: 8.116

3.  Accelerating Discovery of Functional Mutant Alleles in Cancer.

Authors:  Matthew T Chang; Tripti Shrestha Bhattarai; Alison M Schram; Craig M Bielski; Mark T A Donoghue; Philip Jonsson; Debyani Chakravarty; Sarah Phillips; Cyriac Kandoth; Alexander Penson; Alexander Gorelick; Tambudzai Shamu; Swati Patel; Christopher Harris; JianJiong Gao; Selcuk Onur Sumer; Ritika Kundra; Pedram Razavi; Bob T Li; Dalicia N Reales; Nicholas D Socci; Gowtham Jayakumaran; Ahmet Zehir; Ryma Benayed; Maria E Arcila; Sarat Chandarlapaty; Marc Ladanyi; Nikolaus Schultz; José Baselga; Michael F Berger; Neal Rosen; David B Solit; David M Hyman; Barry S Taylor
Journal:  Cancer Discov       Date:  2017-12-15       Impact factor: 39.397

4.  Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons' Data.

Authors:  Galen F Gao; Joel S Parker; Sheila M Reynolds; Tiago C Silva; Liang-Bo Wang; Wanding Zhou; Rehan Akbani; Matthew Bailey; Saianand Balu; Benjamin P Berman; Denise Brooks; Hu Chen; Andrew D Cherniack; John A Demchok; Li Ding; Ina Felau; Sharon Gaheen; Daniela S Gerhard; David I Heiman; Kyle M Hernandez; Katherine A Hoadley; Reyka Jayasinghe; Anab Kemal; Theo A Knijnenburg; Peter W Laird; Michael K A Mensah; Andrew J Mungall; A Gordon Robertson; Hui Shen; Roy Tarnuzzer; Zhining Wang; Matthew Wyczalkowski; Liming Yang; Jean C Zenklusen; Zhenyu Zhang; Han Liang; Michael S Noble
Journal:  Cell Syst       Date:  2019-07-24       Impact factor: 11.091

Review 5.  The Cancer Genome Atlas (TCGA): an immeasurable source of knowledge.

Authors:  Katarzyna Tomczak; Patrycja Czerwińska; Maciej Wiznerowicz
Journal:  Contemp Oncol (Pozn)       Date:  2015

6.  Discovery and saturation analysis of cancer genes across 21 tumour types.

Authors:  Michael S Lawrence; Petar Stojanov; Craig H Mermel; James T Robinson; Levi A Garraway; Todd R Golub; Matthew Meyerson; Stacey B Gabriel; Eric S Lander; Gad Getz
Journal:  Nature       Date:  2014-01-05       Impact factor: 49.962

7.  Discovery of Mcl-1 inhibitors from integrated high throughput and virtual screening.

Authors:  Ahmed S A Mady; Chenzhong Liao; Naval Bajwa; Karson J Kump; Fardokht A Abulwerdi; Katherine L Lev; Lei Miao; Sierrah M Grigsby; Andrej Perdih; Jeanne A Stuckey; Yuhong Du; Haian Fu; Zaneta Nikolovska-Coleska
Journal:  Sci Rep       Date:  2018-07-05       Impact factor: 4.379

8.  Mutational heterogeneity in cancer and the search for new cancer-associated genes.

Authors:  Michael S Lawrence; Petar Stojanov; Paz Polak; Gregory V Kryukov; Kristian Cibulskis; Andrey Sivachenko; Scott L Carter; Chip Stewart; Craig H Mermel; Steven A Roberts; Adam Kiezun; Peter S Hammerman; Aaron McKenna; Yotam Drier; Lihua Zou; Alex H Ramos; Trevor J Pugh; Nicolas Stransky; Elena Helman; Jaegil Kim; Carrie Sougnez; Lauren Ambrogio; Elizabeth Nickerson; Erica Shefler; Maria L Cortés; Daniel Auclair; Gordon Saksena; Douglas Voet; Michael Noble; Daniel DiCara; Pei Lin; Lee Lichtenstein; David I Heiman; Timothy Fennell; Marcin Imielinski; Bryan Hernandez; Eran Hodis; Sylvan Baca; Austin M Dulak; Jens Lohr; Dan-Avi Landau; Catherine J Wu; Jorge Melendez-Zajgla; Alfredo Hidalgo-Miranda; Amnon Koren; Steven A McCarroll; Jaume Mora; Brian Crompton; Robert Onofrio; Melissa Parkin; Wendy Winckler; Kristin Ardlie; Stacey B Gabriel; Charles W M Roberts; Jaclyn A Biegel; Kimberly Stegmaier; Adam J Bass; Levi A Garraway; Matthew Meyerson; Todd R Golub; Dmitry A Gordenin; Shamil Sunyaev; Eric S Lander; Gad Getz
Journal:  Nature       Date:  2013-06-16       Impact factor: 49.962

9.  Gene-specific correlation of RNA and protein levels in human cells and tissues.

Authors:  Fredrik Edfors; Frida Danielsson; Björn M Hallström; Lukas Käll; Emma Lundberg; Fredrik Pontén; Björn Forsström; Mathias Uhlén
Journal:  Mol Syst Biol       Date:  2016-10-20       Impact factor: 11.429

10.  COSMIC: the Catalogue Of Somatic Mutations In Cancer.

Authors:  John G Tate; Sally Bamford; Harry C Jubb; Zbyslaw Sondka; David M Beare; Nidhi Bindal; Harry Boutselakis; Charlotte G Cole; Celestino Creatore; Elisabeth Dawson; Peter Fish; Bhavana Harsha; Charlie Hathaway; Steve C Jupe; Chai Yin Kok; Kate Noble; Laura Ponting; Christopher C Ramshaw; Claire E Rye; Helen E Speedy; Ray Stefancsik; Sam L Thompson; Shicai Wang; Sari Ward; Peter J Campbell; Simon A Forbes
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

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  1 in total

Review 1.  Chemical Probes and Activity-Based Protein Profiling for Cancer Research.

Authors:  Mohammad Faysal Al Mazid; Seung Bin Park; Subba Rao Cheekatla; Dhiraj P Murale; Kyung Ho Shin; Jun-Seok Lee
Journal:  Int J Mol Sci       Date:  2022-05-25       Impact factor: 6.208

  1 in total

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