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Literature DB >> 33737716

Swiss-PO: a new tool to analyze the impact of mutations on protein three-dimensional structures for precision oncology.

Fanny S Krebs¹, Vincent Zoete^2,3, Maxence Trottet^1,4, Timothée Pouchon⁴, Christophe Bovigny⁴, Olivier Michielin^5,6,7.

Abstract

Entities: CellLine Chemical Disease Gene Mutation Species

Year: 2021 PMID： 33737716 PMCID： PMC7973488 DOI： 10.1038/s41698-021-00156-5

Source DB: PubMed Journal: NPJ Precis Oncol ISSN： 2397-768X

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31 in total

1. E-MSD: the European Bioinformatics Institute Macromolecular Structure Database.

Authors: H Boutselakis; D Dimitropoulos; J Fillon; A Golovin; K Henrick; A Hussain; J Ionides; M John; P A Keller; E Krissinel; P McNeil; A Naim; R Newman; T Oldfield; J Pineda; A Rachedi; J Copeland; A Sitnov; S Sobhany; A Suarez-Uruena; J Swaminathan; M Tagari; J Tate; S Tromm; S Velankar; W Vranken
Journal: Nucleic Acids Res Date: 2003-01-01 Impact factor: 16.971

2. SWISS-MODEL: An automated protein homology-modeling server.

Authors: Torsten Schwede; Jürgen Kopp; Nicolas Guex; Manuel C Peitsch
Journal: Nucleic Acids Res Date: 2003-07-01 Impact factor: 16.971

3. UCSF Chimera--a visualization system for exploratory research and analysis.

Authors: Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal: J Comput Chem Date: 2004-10 Impact factor: 3.376

4. Protein-protein recognition and interaction hot spots in an antigen-antibody complex: free energy decomposition identifies "efficient amino acids".

Authors: Virginie Lafont; Michael Schaefer; Roland H Stote; Danièle Altschuh; Annick Dejaegere
Journal: Proteins Date: 2007-05-01

Swiss-PO: a new tool to analyze the impact of mutations on protein three-dimensional structures for precision oncology.

1. E-MSD: the European Bioinformatics Institute Macromolecular Structure Database.

2. SWISS-MODEL: An automated protein homology-modeling server.

3. UCSF Chimera--a visualization system for exploratory research and analysis.

4. Protein-protein recognition and interaction hot spots in an antigen-antibody complex: free energy decomposition identifies "efficient amino acids".

5. LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures.

6. MuPIT interactive: webserver for mapping variant positions to annotated, interactive 3D structures.

7. MSAViewer: interactive JavaScript visualization of multiple sequence alignments.

8. UniProt: the universal protein knowledgebase.

9. MoKCa database--mutations of kinases in cancer.

10. G23D: Online tool for mapping and visualization of genomic variants on 3D protein structures.

1. Structure-based classification of EGFR mutations informs inhibitor selection for lung cancer therapy.

2. MTPpilot: An Interactive Software for Visualization of Next-Generation Sequencing Results in Molecular Tumor Boards.

3. Computational Prediction of the Pathogenic Status of Cancer-Specific Somatic Variants.