| Literature DB >> 30151602 |
Dai Miyazaki1, Daisuke Shimizu2, Yumiko Shimizu2, Yoshitsugu Inoue2, Tomoyuki Inoue3, Shiro Higaki4, Mayumi Ueta5, Sunao Sugita6.
Abstract
PURPOSE: The aim of this study is to determine the efficacy of quantitative real-time PCR (qPCR) and clinical characteristics to diagnose ocular cytomegalovirus (CMV) infections.Entities:
Keywords: Anterior uveitis; Corneal endotheliitis; Cytomegalovirus; Real-time PCR; Retinitis
Mesh:
Substances:
Year: 2018 PMID: 30151602 PMCID: PMC6224019 DOI: 10.1007/s00417-018-4111-9
Source DB: PubMed Journal: Graefes Arch Clin Exp Ophthalmol ISSN: 0721-832X Impact factor: 3.117
Settings for real-time PCR and primers at different institutions
| Facility | DNA extraction | Real-time PCR | CMV amplicon | Primers and probe |
|---|---|---|---|---|
| A | EZ1 Advanced XL | Light cycler 2.0 (Roche) | IE-1 | CATGAAGGTCTTTGCCCAGTAC |
| B | QIAamp Viral RNA Mini (Qiagen) | ABI 7000 | DNA polymerase | GCTGACGCGTTTGGTCATC |
| C | QIAamp DNA Mini (Qiagen) | StepOnePlus | DNA polymerase | GCTGACGCGTTTGGTCATC |
| D | DNA Extract All | StepOnePlus | Pa034534000_s1 | |
| E | QIAamp DNA Mini Kit (Qiagen) | Light cycler 2.0 (Roche) | Glycoprotein B | AAGTACCCCTATCGCGTGTG |
Efficacy of CMV real-time PCR evaluated by WHO CMV standard
| Copy/IU | 95% confidence interval | Area under curve | ||
|---|---|---|---|---|
| Cut-off (95% probability detection) | ||||
| A | 1.20 | 1.08–1.33 | 0.000 | 1.0 |
| B | 1.26 | 1.13–1.39 | 0.000 | 1.0 |
| C | 1.68 | 1.56–1.81 | 0.000 | 1.0 |
| D | 4.66 | 4.54–4.79 | 0.000 | 1.0 |
| E | 0.82 | 0.70–0.95 | 0.000 | 1.0 |
Causative viral pathogen and disease type
| Corneal endotheliitis type | Anterior uveitis type | Retinitis type | |
|---|---|---|---|
| Cytomegalovirus | 34.8% (24 eyes) | 17.8% (19 eyes) | 19.1% (4 eyes) |
| Herpes simplex virus | 20.3% (14 eyes) | 5.6% (6 eyes)* | 4.8% (1 eyes) |
| Varicella zoster virus | 2.9% (2 eyes)** | 9.3% (10 eyes) | 4.8% (1 eyes) |
| Total (eyes) | 69 | 107 | 21 |
*P = 0.006; **P = 0.0000, proportional test
Fig. 1Disease type-dependent cytomegalovirus DNA amounts at the first presentation. CMV retinitis showed significantly higher cytomegalovirus DNA than other types of CMV infections. CMV DNA amount of shedding was significantly lower than those of ocular CMV infections. *P = 0.01; **P = 0.005; ***P = 0.002; ****P = 0.001; *****P = 0.000
Association of CMV DNA with clinical characteristics by logistic regression analysis
| Corneal disease type | Anterior uveitis type | Retinitis type | |||||||
|---|---|---|---|---|---|---|---|---|---|
| OR | 95% CI | OR | 95% CI | OR | 95% CI | ||||
| Frequency of recurrences | 2.2 | 1.5–3.3 | 0.000 | 1.5 | 1.2–1.9 | 0.002 | 1 | NS | |
| IOP elevations | 1.6 | 1.2–2.0 | 0.000 | 1.6 | 1.1–2.3 | 0.009 | 1.3 | 0.8–2.0 | NS |
| Corneal endothelial cell loss | 1 | 0.8–1.3 | NS | 1.4 | 1.1–1.8 | 0.002 | NS | ||
OR odds ratio (per log CMV IU/ml) after age adjustment
Sensitivity and specificity profile of CMV real-time PCR
| Overall | Corneal disease type | Uveitis type | ||||
|---|---|---|---|---|---|---|
| 95% CI | 95% CI | 95% CI | ||||
| Sensitivity | 89.4% | 76.6–95.6% | 91.7% | 70.9–98.0% | 84.2% | 59.7–95.1% |
| Specificity | 94.0% | 88.8–96.9% | 88.9% | 75.4–95.4% | 95.5% | 88.3–98.3% |
| Positive predictive value | 82.4% | 69.2–90.7% | 81.5% | 61.6–92.3% | 80.0% | 56.2–93.3% |
| Negative predictive value | 96.6% | 92.0–98.6% | 95.2% | 82.2–98.9% | 96.6% | 89.7–98.9% |
| False positive rate | 17.7% | 9.3–30.8% | 18.5% | 7.7–38.4% | 20.0% | 7.4–43.8% |
| False negative rate | 3.4% | 1.4–8.0% | 4.8% | 1.1–17.8% | 3.5% | 1.1–10.3% |
Fig. 2Receiver operating characteristics regression analysis of cytomegalovirus real-time PCR of aqueous humor and clinical signs for corneal disease type and uveitis type of disease. Cytomegalovirus real-time PCR showed excellent area under the curve (AUC) of 0.98. a For the clinical signs of corneal disease type, the number of recurrences and IOP elevations had good AUCs of 0.89 and 0.78, respectively. b For the anterior uveitis type of disease, the number of recurrences had a good AUC of 0.82, followed by IOP elevation (AUC 0.76)