| Literature DB >> 30131545 |
Aisha A Hussein1, Tymour Forouzanfar1, Elisabeth Bloemena1, Jgam de Visscher1, Ruud H Brakenhoff2, C René Leemans2, Marco N Helder3.
Abstract
BACKGROUND: There is a great interest in developing biomarkers to enhance early detection and clinical management of tongue squamous cell carcinoma (TSCC). However, the developmental path towards a clinically valid biomarker remains extremely challenging. Ideally, the initial key step in moving a newly discovered biomarker towards clinical implementation is independent replication. Therefore, the focus of this review is on biomarkers that consistently showed clinical relevance in two or more publications.Entities:
Mesh:
Substances:
Year: 2018 PMID: 30131545 PMCID: PMC6173763 DOI: 10.1038/s41416-018-0233-4
Source DB: PubMed Journal: Br J Cancer ISSN: 0007-0920 Impact factor: 7.640
Fig. 1Flow chart illustrating studies selected
Summary of body-fluid biomarkers for TSCC
| Studied biomarkers | No. patients | Sample type | Significance of biomarker (s)a | Test accuracy indices | Expression | Potential clinical purpose | Level of evidence (LoE)a | References |
|---|---|---|---|---|---|---|---|---|
| Group A studies | ||||||||
| AMDL DR-70 | 52 | Serum | AMDL DR-70 | 73%/93%b | ↑ | Poor prognosis | + |
[ |
| SCCA-1 | 4 | Serum | SCCA-1 | — | ↑ | Detection | + |
[ |
| CA125, CA19-9, TPS, CEA, SCC, and Cyfra 21-1 | 21 | Saliva |
| 71%/75%b | ↑ | Detection & diagnosis | + |
[ |
| Adenosine deaminase | 50 | Saliva & serum |
| — | ↑ | Detection | + |
[ |
| Adiponectin | 59 | serum | Adiponectin | — | ↓ | Poor prognosis | + |
[ |
| | 43 | Serum |
| — | ↓ | Progression | − |
[ |
| Group B studies | ||||||||
| Prolactin and TPS | 20 | Serum |
| 100 %c & 75 % | ↑ | Poor prognosis | +++ |
[ |
| Prolactin, TPS, EGF, and IGF-1 | 52 | Serum |
| — | ↑ | Poor prognosis |
[ | |
| Prolactin | 37 | Serum |
| 100%/100%c | ↑ | Poor prognosis |
[ | |
| Prolactin | 99 | Serum |
| — | ↑ | Poor prognosis |
[ | |
| IL-1a, IL-6, IL-8, VEGF-a, and TNF-a | 18 | Saliva | IL-1a | — | ↑ | Detection & poor prognosis | ++d |
[ |
| COL5A1, ABCG1, MMP1, IL-8, and FN1 | 37 | Saliva | COL5A1, ABCG1, MMP1 | 65%/87%b | ↑ | Detection |
[ | |
| IL-6 | 17 | Serum |
| 95%/ 45%b | ↑ | Detection & diagnosis |
[ | |
− no significant association between biomarker and clinical value, + number of studies with statistical significant outcome = 1, ++ number of studies with consistent outcome = 2, +++ number of studies with consistent outcome ≥3, ↑increased, ↓decreased
aOnly significant biomarker(s) used in ranking level of evidence
bSensitivity/specificity
cPredictive value
dThe evaluation for biomarkers in bold.
Summary of proteins biomarkers for TSCC
| Tested proteins | Sample size | Sample type | Significant biomarkera | Expression | Potential clinical use | Level of evidence (LoE)a | References |
|---|---|---|---|---|---|---|---|
| Group A studies | |||||||
| Bmi-1, c-myc, and Snail | 73 | Tissue |
| ↓ | Poor prognosis | + |
[ |
| Foxp3 | 81 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| RCAS1 | 49 | Tissue |
| ↑ | Not prognosticator | − |
[ |
| Metallothionei | 49 | Tissue |
| ↑ | Good prognosis | + |
[ |
| HDAC-1 and -2 | 49 | Tissue |
| ↑ | Not prognosticator | − |
[ |
| TRB3 and p-AKT | 128 | Tissue |
| ↑↓ | Good prognosis, | + |
[ |
| MMP-2, MMP-8, MMP-9, and MMP-13 | 73 | Tissue |
| ↑ | poor prognosis (Invasion depth & tumor size) | + |
[ |
| GOLPH3 | 179 | Tissue |
| ↑ | poor prognosis | + |
[ |
| FAK and Src | 48 | Tissue |
| ↑ | Not Prognosticator | − |
[ |
| TLR5 | 119 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| AEG-1 | 93 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| EZH2 and Ki-67 | 84 | Tissue |
| ↑ | poor prognosis | + |
[ |
| BATF2 | 202 | Tissue |
b
| ↓ | poor prognosis | + |
[ |
| FLOT1 | 181 | Tissue |
b
| ↑ | Poor prognosis | + |
[ |
| Eph-A1, -A2, -A4, and -A7 | 37 | Tissue |
| ↑ | Good prognosis | + |
[ |
| LAT1, ASCT2, xCT, 4F2hc, and Ki-67 | 85 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| α –SMA, N-cadherin, vimentin, and LYVE-1 | 50 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| p16 | 167 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| t-ERK1 and p-ERK1/2 | 47 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| PKM2 and LDH5 | 63 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| LSD1 and Ki-67 | 63 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| ZEB1 and CA9 | 84 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| CAFs and Activin A | 110 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| MMP2 and MMP9 | 59 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| CAF | 178 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| Foxc2 | 61 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| RKIP | 85 | Tissue |
| ↓ | poor prognosis | + |
[ |
| MMP13 and TLR9 | 195 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| VEGF-C and VEGF-A | 90 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| VEGF-C, VEGFR-3, and podoplanin | 65 | Tissue |
| ↑ | Not prognosticator | − |
[ |
| CB1R and CB2R | 28 | Tissue |
| ↑ | Good prognosis | + |
[ |
| VEGF‑C, VEGFR‑3, CCR7, Nrp1,2, MVD, LVD, and SEMA3E | 80 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| Securin | 93 | Tissue |
| ↑ | Not prognosticator | − |
[ |
| HMGA2, Snail, E-cadherin, and Vimentin | 60 | Tissue |
b
| ↑ | Poor prognosis | + |
[ |
| HK2 | 137 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| SUZ12 | 72 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| pEGFR | 48 | Tissue |
| ↑ | Good prognosis | + |
[ |
| HA and EGFRc | 64 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| Nrp2, VEGF-C, VEGFR-3, and Sema3Fd | 88 | Tissue |
| ↑ | Poor prognosis | + |
[ |
| Group B studies | |||||||
| SIP1 and E-cadherin | 37 | Tissue | SIP1 | ↑&↓ | Poor prognosis (Delayed neck metastasis) | ++ |
[ |
| Snai1,Snai2, E-cadherin, and vimentin | 53 + 76 (129) | Tissue |
| ↓&↑ | Poor prognosis |
[ | |
| CXCR4, CXCR12, CA9, E-cadherin, and vimentin | 47 | Tissue |
| ↑ | poorer prognosis | +++ |
[ |
| Snail, Twist, E-cadherin, and Ncadherin, and vimentin | 248 | Tissue |
| ↑ | Poor prognosis |
[ | |
| HIF-1α, HIF-2α TWIST2, and SNIP1 | 89 | Tissue | ↑ | Poor prognosis | +++ |
[ | |
| CypA, CD147, HIF-1 α, VEGF-A, and VEGF-C | 80 | Tissue |
| ↑ | Poor prognosis |
[ | |
| HIF-1 α, CA-9, GLUT-1, and EPOR | 33 | Tissue |
| ↑ | Poor prognosis |
[ | |
| HIF-1α and VEGF | 49 | Tissue |
| ↑ | poor prognosis |
[ | |
| SOX2 | 82 | Tissue |
| ↑ | Poor Prognosis | ++ |
[ |
| ALDH1, CD44, OCT4, and SOX2 | 6 | Tissue |
| ↑ | Poor prognosis |
[ | |
− no significant association between biomarker and clinical value, + number of studies with statistical significant outcome = 1, ++ number of studies with consistent outcome = 2, +++ number of studies with consistent outcome ≥3, ↑increased, ↓decreased
aOnly significant biomarker(s) used in ranking level of evidence
bstudies confirmed by mRNA
cElectronically published in March
dElectronically published in June
Summary of DNA biomarkers for TSCC
| Studied biomarkers | Sample size | Method | Significant biomarkersa | Type of mutation | Potential clinical use | Prevalence | Level of evidence (LoE)a | References |
|---|---|---|---|---|---|---|---|---|
| Group A studies | ||||||||
| TP53 | 31 | FISH |
| CNV (deletion) | Field cancerization | late-stage tumors 75% | + |
[ |
| CCND1 | 23 | FISH |
| (amplification) CNV | Poor prognosis | 13 (56.5%) | + |
[ |
| CCND1 | 22 | FISH |
| (AmplificationCNV( | Not prognosticator | 2(9.1%) | − |
[ |
| 7q21 | 16 | CGH |
| Copy number gain | Metastatic | 44% | + |
[ |
| MMP-1 -1607 1G/2G and IL-8 -251 A/T | 69 | FISH |
| SNP in the promoter region | Progression & recurrence | 38(%53.6) 8(%116) | + |
[ |
| Her-2 ⁄ neu | 40 | FISH |
| CNV | Not prognosticator | 1(2.5%) | − |
[ |
| EGFR | 78 | FISH |
| CNV | Not prognosticator (no correlation with survival) | 35 (54%) | − |
[ |
| FADD | 30 | RT-PCR |
| CNV (Amplification) | Poor differentiation | 13 (44.3%) | + |
[ |
| Telomeres | 24 | Q-FISH |
| Shortening | Field cancerization | — | + |
[ |
| WIF1 and RUNX3 methylation | 76 | nested methylation specific PCR method |
| Promotor hypermethylation | Poor prognosis (lymph node involvement) | 25% | + |
[ |
| EGFR | 89 | FISH |
| CNV | Poor prognosis | 32 (36%) | + |
[ |
| FGFR1 | 123 | FISH |
| CNV (amplification) | Not prognosticator | 9.3% | − |
[ |
| Survivin gene | 91 | PCR |
| Polymorphism at -31 G/C | Advanced stage | 23% in T1 and 48% with larger tumor | + |
|
| TP53 | 115 | PCR-RFLP, allele specific PCR & Sanger sequencing |
| Pro72Arg polymorphism | High risk of cancer | 44 (38.3%) | + |
[ |
| TP53, STK11, MET, PIK3CA, BRAF and NRF2 | 66 | Sequenom multiplexed LungCarta panel |
| Missense | Poor loco-regional recurrence | 10.6% (11) | + |
[ |
| CDKN2A | 131 | Sanger sequencing, FISH & Methylation-sensitive high resolution melting |
| CNV missense & promotor methylation | Not prognosticator | — |
[ | |
| 8q11.21, 8q12.2-3, and 8q21.3, 22q11.23, 16p11.2, and 20q11.2 | 10 | High density SNP array |
| CNV (gain) | Metastasis | 50% | + |
[ |
| ACTN4 (protein name: actinin-4) | 54 | FISH |
| CNV (amplification) | Poor prognosis | 6 (12.5%) | + |
[ |
| Group B studies | ||||||||
| TP53 | 39 | SSCP |
| Deletion | Poor prognosis (advanced stage & high grade) | 21 (54%) | +++ |
[ |
| TP53 & CDKN2A | 51 | PCR, and direct sequencing on 3730xl DNA Analyzer | Point mutation | Poor prognosis | 10 (19.6%) 4 (7.8%) |
[ | ||
| FHIT, EGFR,LOH, TP53 DNA binding domain | 121 | Bidirectional sequencing, MSI &LOH analysis |
| Point mutation | Poor prognosis | 18% |
[ | |
| TP53 & NOTCH1 | 50 | Exome sequencing, SNP genotyping, CNVs & LOH |
| — | Poor prognosis (nodal metastasis) | 38% | ++ |
[ |
|
| Poor prognosis (Poorly differentiated tumor) | 4% | ||||||
| NOTCH1 | 60 | Whole-exome & targeted deep sequencing |
| Point mutation | Poor prognosis (high recurrence) | 5% |
[ | |
− no significant association between biomarker and clinical value, + number of studies with statistical significant outcome = 1, ++ number of studies with consistent outcome = 2, +++ number of studies with consistent outcome ≥3, ↑ increased, ↓ decreased, Q-FISH quantitative fluorescent in situ hybridization, RT-PCR real-time polymerase chain reaction, CGH comparative genomic hybridization, sequenom multiplexed LungCarta panel panel of assays for somatic mutation profiling, SNP single nucleotide polymorphism, SSCP single stranded conformation polymorphism, MSI microsatellite instability, LOH loss of heterozygosity, CNV copy number variation
aOnly significant biomarker(s) used in ranking level of evidence
Summary of long non-coding RNAs biomarkers for TSCC
| Studied biomarkers | Sample Type | Sample size | Significant biomarkersa | Detection method | Expression | Clinical implication | Level of evidence (LoE)a | References | |
|---|---|---|---|---|---|---|---|---|---|
| Group A studies | |||||||||
| lncRNA UCA1 | Tissue | 94 |
| qRT-PCRb | ↑ | Poor prognosis (Increased risk metastasis) | + |
[ | |
| | Tissue | 32 |
| qRT-PCR | ↓ | Advanced T stages | + | ||
| |
| ↑ | Poor prognosis (Increased risk metastasis) | + |
[ | ||||
| lncRNA MEG3 | Tissue | 76 |
| qRT-PCR | ↓ | Poor Prognosis | + |
[ | |
| lncRNA HOTTIP | Tissue | 86 |
| qRT-PCR | ↑ | Poor Prognosis | + |
[ | |
| lncRNA NKILA | Tissue | 96 |
| qRT-PCR | ↓ | Poor prognosis (Increased risk metastasis) | + |
[ | |
| lncRNA TUG1 | Tissue | 27 |
| qRT-PCR | ↓ | Detection | + |
[ | |
| lncRNA TUC338 | Tissue | 25 |
| qRT-PCR | ↑ | Enhanced proliferation | + |
[ | |
| lnc RNA 152 ( | Tissue | 15 | 197 |
| qRT-PCR & in situ hybridization | ↑ | Detection & prognosis | + |
[ |
| 18 2 | |||||||||
| lncRNA 673 (LINC00673) | Tissue | 202 | 217 |
| qRT-PCR | ↑ | Poor prognosis (Increased risk metastasis) | + |
[ |
| 15 | |||||||||
| Group B studies | |||||||||
| MALAT1 | Tissue & cell lines (CAL27 and SCC-25) | 127 |
| qRT-PCR | ↑ | Poor prognosis (Increased risk metastasis) | ++ |
[ | |
| MALAT1 | Tongue cancer cell lines and tissue | 30 |
| qRT-PCR | ↑ | Poor prognosis (Increased risk metastasis) |
[ | ||
− no significant association between biomarker and clinical value, + number of studies with statistical significant outcome = 1, ++ number of studies with consistent outcome = 2, +++ number of studies with consistent outcome ≥3, ↑increased, ↓decreased
aOnly significant biomarker(s) used in ranking level of evidence
bqRT-PCR: quantitative real-time polymerase chain reaction
Fig. 2A diagram illustrating the promising biomarkers