Literature DB >> 30122535

Mechanism for the Regulated Control of Bacterial Transcription Termination by a Universal Adaptor Protein.

Michael R Lawson1, Wen Ma2, Michael J Bellecourt3, Irina Artsimovitch4, Andreas Martin5, Robert Landick6, Klaus Schulten2, James M Berger7.   

Abstract

NusG/Spt5 proteins are the only transcription factors utilized by all cellular organisms. In enterobacteria, NusG antagonizes the transcription termination activity of Rho, a hexameric helicase, during the synthesis of ribosomal and actively translated mRNAs. Paradoxically, NusG helps Rho act on untranslated transcripts, including non-canonical antisense RNAs and those arising from translational stress; how NusG fulfills these disparate functions is unknown. Here, we demonstrate that NusG activates Rho by assisting helicase isomerization from an open-ring, RNA-loading state to a closed-ring, catalytically active translocase. A crystal structure of closed-ring Rho in complex with NusG reveals the physical basis for this activation and further explains how Rho is excluded from translationally competent RNAs. This study demonstrates how a universally conserved transcription factor acts to modulate the activity of a ring-shaped ATPase motor and establishes how the innate sequence bias of a termination factor can be modulated to silence pervasive, aberrant transcription.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  ATPase; NusG; Rho; Spt5; termination; transcription; translation

Mesh:

Substances:

Year:  2018        PMID: 30122535      PMCID: PMC6151137          DOI: 10.1016/j.molcel.2018.07.014

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  59 in total

1.  Template convolution to enhance or detect structural features in macromolecular electron-density maps.

Authors:  G J Kleywegt; T A Jones
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-03-01

2.  Purification of bacterial RNA polymerase: tools and protocols.

Authors:  Vladimir Svetlov; Irina Artsimovitch
Journal:  Methods Mol Biol       Date:  2015

3.  Version 1.2 of the Crystallography and NMR system.

Authors:  Axel T Brunger
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

4.  NusG alters rho-dependent termination of transcription in vitro independent of kinetic coupling.

Authors:  K W Nehrke; F Zalatan; T Platt
Journal:  Gene Expr       Date:  1993

Review 5.  Rho Protein: Roles and Mechanisms.

Authors:  Pallabi Mitra; Gairika Ghosh; Md Hafeezunnisa; Ranjan Sen
Journal:  Annu Rev Microbiol       Date:  2017-07-21       Impact factor: 15.500

6.  Ligand-induced and small-molecule control of substrate loading in a hexameric helicase.

Authors:  Michael R Lawson; Kevin Dyer; James M Berger
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-07       Impact factor: 11.205

7.  Molecular mechanisms of substrate-controlled ring dynamics and substepping in a nucleic acid-dependent hexameric motor.

Authors:  Nathan D Thomsen; Michael R Lawson; Lea B Witkowsky; Song Qu; James M Berger
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-16       Impact factor: 11.205

8.  Identification and characterization of transcription termination sites in the Escherichia coli lacZ gene.

Authors:  E C Ruteshouser; J P Richardson
Journal:  J Mol Biol       Date:  1989-07-05       Impact factor: 5.469

9.  Structural basis of Smoothened regulation by its extracellular domains.

Authors:  Eamon F X Byrne; Ria Sircar; Simon Newstead; Paul S Miller; George Hedger; Giovanni Luchetti; Sigrid Nachtergaele; Mark D Tully; Laurel Mydock-McGrane; Douglas F Covey; Robert P Rambo; Mark S P Sansom; Rajat Rohatgi; Christian Siebold
Journal:  Nature       Date:  2016-07-20       Impact factor: 49.962

10.  Diversity in ATP concentrations in a single bacterial cell population revealed by quantitative single-cell imaging.

Authors:  Hideyuki Yaginuma; Shinnosuke Kawai; Kazuhito V Tabata; Keisuke Tomiyama; Akira Kakizuka; Tamiki Komatsuzaki; Hiroyuki Noji; Hiromi Imamura
Journal:  Sci Rep       Date:  2014-10-06       Impact factor: 4.379

View more
  24 in total

Review 1.  The Mechanisms of Substrate Selection, Catalysis, and Translocation by the Elongating RNA Polymerase.

Authors:  Georgiy A Belogurov; Irina Artsimovitch
Journal:  J Mol Biol       Date:  2019-05-31       Impact factor: 5.469

Review 2.  Tuning the sequence specificity of a transcription terminator.

Authors:  Michael R Lawson; James M Berger
Journal:  Curr Genet       Date:  2019-02-09       Impact factor: 3.886

3.  Archaeal transcription.

Authors:  Breanna R Wenck; Thomas J Santangelo
Journal:  Transcription       Date:  2020-10-28

4.  Differential Local Stability Governs the Metamorphic Fold Switch of Bacterial Virulence Factor RfaH.

Authors:  Pablo Galaz-Davison; José Alejandro Molina; Steve Silletti; Elizabeth A Komives; Stefan H Knauer; Irina Artsimovitch; César A Ramírez-Sarmiento
Journal:  Biophys J       Date:  2019-11-21       Impact factor: 4.033

Review 5.  Mechanisms of Transcriptional Pausing in Bacteria.

Authors:  Jin Young Kang; Tatiana V Mishanina; Robert Landick; Seth A Darst
Journal:  J Mol Biol       Date:  2019-07-13       Impact factor: 5.469

Review 6.  Rho-dependent transcription termination: a revisionist view.

Authors:  Zhitai Hao; Vladimir Svetlov; Evgeny Nudler
Journal:  Transcription       Date:  2021-10-27

7.  A scalable framework for the discovery of functional helicase substrates and helicase-driven regulatory switches.

Authors:  Mildred Delaleau; Eric Eveno; Isabelle Simon; Annie Schwartz; Marc Boudvillain
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-12       Impact factor: 12.779

8.  Steps toward translocation-independent RNA polymerase inactivation by terminator ATPase ρ.

Authors:  Nelly Said; Tarek Hilal; Nicholas D Sunday; Ajay Khatri; Jörg Bürger; Thorsten Mielke; Georgiy A Belogurov; Bernhard Loll; Ranjan Sen; Irina Artsimovitch; Markus C Wahl
Journal:  Science       Date:  2020-11-26       Impact factor: 47.728

9.  Pre-termination Transcription Complex: Structure and Function.

Authors:  Zhitai Hao; Vitaly Epshtein; Kelly H Kim; Sergey Proshkin; Vladimir Svetlov; Venu Kamarthapu; Binod Bharati; Alexander Mironov; Thomas Walz; Evgeny Nudler
Journal:  Mol Cell       Date:  2020-12-08       Impact factor: 17.970

Review 10.  Macromolecular assemblies supporting transcription-translation coupling.

Authors:  Michael W Webster; Albert Weixlbaumer
Journal:  Transcription       Date:  2021-09-27
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.