Literature DB >> 30109846

An Introduction to the Structure and Function of the Catalytic Core Enzyme of Escherichia coli RNA Polymerase.

Catherine Sutherland1, Katsuhiko S Murakami1.   

Abstract

RNA polymerase (RNAP) is the essential enzyme responsible for transcribing genetic information stored in DNA to RNA. Understanding the structure and function of RNAP is important for those who study basic principles in gene expression, such as the mechanism of transcription and its regulation, as well as translational sciences such as antibiotic development. With over a half-century of investigations, there is a wealth of information available on the structure and function of Escherichia coli RNAP. This review introduces the structural features of E. coli RNAP, organized by subunit, giving information on the function, location, and conservation of these features to early stage investigators who have just started their research of E. coli RNAP.

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Year:  2018        PMID: 30109846      PMCID: PMC6095464          DOI: 10.1128/ecosalplus.ESP-0004-2018

Source DB:  PubMed          Journal:  EcoSal Plus        ISSN: 2324-6200


  56 in total

Review 1.  Activating transcription in bacteria.

Authors:  David J Lee; Stephen D Minchin; Stephen J W Busby
Journal:  Annu Rev Microbiol       Date:  2012-06-15       Impact factor: 15.500

2.  Positioning of two alpha subunit carboxy-terminal domains of RNA polymerase at promoters by two transcription factors.

Authors:  K Murakami; J T Owens; T A Belyaeva; C F Meares; S J Busby; A Ishihama
Journal:  Proc Natl Acad Sci U S A       Date:  1997-10-14       Impact factor: 11.205

3.  The discovery of RNA polymerase.

Authors:  Jerard Hurwitz
Journal:  J Biol Chem       Date:  2005-10-17       Impact factor: 5.157

4.  Trigger loop of RNA polymerase is a positional, not acid-base, catalyst for both transcription and proofreading.

Authors:  Tatiana V Mishanina; Michael Z Palo; Dhananjaya Nayak; Rachel A Mooney; Robert Landick
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-12       Impact factor: 11.205

5.  ppGpp Binding to a Site at the RNAP-DksA Interface Accounts for Its Dramatic Effects on Transcription Initiation during the Stringent Response.

Authors:  Wilma Ross; Patricia Sanchez-Vazquez; Albert Y Chen; Jeong-Hyun Lee; Hector L Burgos; Richard L Gourse
Journal:  Mol Cell       Date:  2016-05-26       Impact factor: 17.970

6.  Structural basis for rifamycin resistance of bacterial RNA polymerase by the three most clinically important RpoB mutations found in Mycobacterium tuberculosis.

Authors:  Vadim Molodtsov; Nathan T Scharf; Maxwell A Stefan; George A Garcia; Katsuhiko S Murakami
Journal:  Mol Microbiol       Date:  2017-01-10       Impact factor: 3.501

Review 7.  Macromolecular micromovements: how RNA polymerase translocates.

Authors:  Vladimir Svetlov; Evgeny Nudler
Journal:  Curr Opin Struct Biol       Date:  2009-11-02       Impact factor: 6.809

8.  6S RNA Mimics B-Form DNA to Regulate Escherichia coli RNA Polymerase.

Authors:  James Chen; Karen M Wassarman; Shili Feng; Katherine Leon; Andrey Feklistov; Jared T Winkelman; Zongli Li; Thomas Walz; Elizabeth A Campbell; Seth A Darst
Journal:  Mol Cell       Date:  2017-10-05       Impact factor: 17.970

9.  Opening and closing of the bacterial RNA polymerase clamp.

Authors:  Anirban Chakraborty; Dongye Wang; Yon W Ebright; You Korlann; Ekaterine Kortkhonjia; Taiho Kim; Saikat Chowdhury; Sivaramesh Wigneshweraraj; Herbert Irschik; Rolf Jansen; B Tracy Nixon; Jennifer Knight; Shimon Weiss; Richard H Ebright
Journal:  Science       Date:  2012-08-03       Impact factor: 47.728

10.  TRANSCRIPTION. Structures of the RNA polymerase-σ54 reveal new and conserved regulatory strategies.

Authors:  Yun Yang; Vidya C Darbari; Nan Zhang; Duo Lu; Robert Glyde; Yi-Ping Wang; Jared T Winkelman; Richard L Gourse; Katsuhiko S Murakami; Martin Buck; Xiaodong Zhang
Journal:  Science       Date:  2015-08-21       Impact factor: 47.728

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  10 in total

1.  The Core and Holoenzyme Forms of RNA Polymerase from Mycobacterium smegmatis.

Authors:  Tomáš Kouba; Jiří Pospíšil; Jarmila Hnilicová; Hana Šanderová; Ivan Barvík; Libor Krásný
Journal:  J Bacteriol       Date:  2019-01-28       Impact factor: 3.490

Review 2.  The Context-Dependent Influence of Promoter Sequence Motifs on Transcription Initiation Kinetics and Regulation.

Authors:  Drake Jensen; Eric A Galburt
Journal:  J Bacteriol       Date:  2021-03-23       Impact factor: 3.490

Review 3.  Watching the bacterial RNA polymerase transcription reaction by time-dependent soak-trigger-freeze X-ray crystallography.

Authors:  Yeonoh Shin; Katsuhiko S Murakami
Journal:  Enzymes       Date:  2021-07-24

Review 4.  Mechanisms of σ54-Dependent Transcription Initiation and Regulation.

Authors:  Amy E Danson; Milija Jovanovic; Martin Buck; Xiaodong Zhang
Journal:  J Mol Biol       Date:  2019-04-25       Impact factor: 5.469

5.  Proteomic Analysis of Stationary Growth Stage Adaptation and Nutritional Deficiency Response of Brucella abortus.

Authors:  Jianghua Yang; Mengzhi Liu; Jinling Liu; Baoshan Liu; Chuanyu He; Zeliang Chen
Journal:  Front Microbiol       Date:  2020-12-15       Impact factor: 5.640

Review 6.  Diverse molecular mechanisms of transcription regulation by the bacterial alarmone ppGpp.

Authors:  Brady A Travis; Maria A Schumacher
Journal:  Mol Microbiol       Date:  2021-12-25       Impact factor: 3.979

7.  Three-Dimensional Envelope and Subunit Interactions of the Plastid-Encoded RNA Polymerase from Sinapis alba.

Authors:  Rémi Ruedas; Soumiya Sankari Muthukumar; Sylvie Kieffer-Jaquinod; François-Xavier Gillet; Daphna Fenel; Grégory Effantin; Thomas Pfannschmidt; Yohann Couté; Robert Blanvillain; David Cobessi
Journal:  Int J Mol Sci       Date:  2022-08-31       Impact factor: 6.208

8.  Rapid Adaptation Often Occurs through Mutations to the Most Highly Conserved Positions of the RNA Polymerase Core Enzyme.

Authors:  Yasmin Cohen; Ruth Hershberg
Journal:  Genome Biol Evol       Date:  2022-09-06       Impact factor: 4.065

9.  Transcriptional Response of Wolbachia to Dengue Virus Infection in Cells of the Mosquito Aedes aegypti.

Authors:  Michael Leitner; Cameron Bishop; Sassan Asgari
Journal:  mSphere       Date:  2021-06-30       Impact factor: 4.389

10.  Minor Alterations in Core Promoter Element Positioning Reveal Functional Plasticity of a Bacterial Transcription Factor.

Authors:  Wamiah P Chowdhury; Kenneth A Satyshur; James L Keck; Patricia J Kiley
Journal:  mBio       Date:  2021-11-02       Impact factor: 7.867

  10 in total

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