Literature DB >> 9326599

Positioning of two alpha subunit carboxy-terminal domains of RNA polymerase at promoters by two transcription factors.

K Murakami1, J T Owens, T A Belyaeva, C F Meares, S J Busby, A Ishihama.   

Abstract

Interactions between the cAMP receptor protein (CRP) and the carboxy-terminal regulatory domain (CTD) of Escherichia coli RNA polymerase alpha subunit were analyzed at promoters carrying tandem DNA sites for CRP binding using a chemical nuclease covalently attached to alpha. Each CRP dimer was found to direct the positioning of one of the two alpha subunit CTDs. Thus, the function of RNA polymerase may be subject to regulation through protein-protein interactions between the two alpha subunits and two different species of transcription factors.

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Year:  1997        PMID： 9326599      PMCID： PMC23438          DOI： 10.1073/pnas.94.21.11274

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  25 in total

1.  Solution structure of the activator contact domain of the RNA polymerase alpha subunit.

Authors:  Y H Jeon; T Negishi; M Shirakawa; T Yamazaki; N Fujita; A Ishihama; Y Kyogoku
Journal:  Science       Date:  1995-12-01       Impact factor: 47.728

Review 2.  The Escherichia coli RNA polymerase alpha subunit: structure and function.

Authors:  R H Ebright; S Busby
Journal:  Curr Opin Genet Dev       Date:  1995-04       Impact factor: 5.578

3.  Functional map of the alpha subunit of Escherichia coli RNA polymerase: insertion analysis of the amino-terminal assembly domain.

Authors:  M Kimura; A Ishihama
Journal:  J Mol Biol       Date:  1995-05-12       Impact factor: 5.469

4.  DNA-binding determinants of the alpha subunit of RNA polymerase: novel DNA-binding domain architecture.

Authors:  T Gaal; W Ross; E E Blatter; H Tang; X Jia; V V Krishnan; N Assa-Munt; R H Ebright; R L Gourse
Journal:  Genes Dev       Date:  1996-01-01       Impact factor: 11.361

5.  Domain organization of RNA polymerase alpha subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding.

Authors:  E E Blatter; W Ross; H Tang; R L Gourse; R H Ebright
Journal:  Cell       Date:  1994-09-09       Impact factor: 41.582

6.  Functional map of the alpha subunit of Escherichia coli RNA polymerase. Deletion analysis of the amino-terminal assembly domain.

Authors:  M Kimura; N Fujita; A Ishihama
Journal:  J Mol Biol       Date:  1994-09-16       Impact factor: 5.469

7.  Location of the C-terminal domain of the RNA polymerase alpha subunit in different open complexes at the Escherichia coli galactose operon regulatory region.

Authors:  T A Belyaeva; J A Bown; N Fujita; A Ishihama; S J Busby
Journal:  Nucleic Acids Res       Date:  1996-06-15       Impact factor: 16.971

8.  Structural map of the alpha subunit of Escherichia coli RNA polymerase: structural domains identified by proteolytic cleavage.

Authors:  T Negishi; N Fujita; A Ishihama
Journal:  J Mol Biol       Date:  1995-05-12       Impact factor: 5.469

Review 9.  Protein-protein interactions during transcription activation: the case of the Escherichia coli cyclic AMP receptor protein.

Authors:  N Savery; V Rhodius; S Busby
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1996-04-29       Impact factor: 6.237

10.  Functional map of the alpha subunit of Escherichia coli RNA polymerase: amino acid substitution within the amino-terminal assembly domain.

Authors:  M Kimura; A Ishihama
Journal:  J Mol Biol       Date:  1995-12-01       Impact factor: 5.469
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  33 in total

1.  Bacterial promoter architecture: subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit.

Authors:  S T Estrem; W Ross; T Gaal; Z W Chen; W Niu; R H Ebright; R L Gourse
Journal:  Genes Dev       Date:  1999-08-15       Impact factor: 11.361

2.  Coactivation of the RpoS-dependent proP P2 promoter by fis and cyclic AMP receptor protein.

Authors:  S M McLeod; J Xu; R C Johnson
Journal:  J Bacteriol       Date:  2000-08       Impact factor: 3.490

3.  Mutational scanning and affinity cleavage analysis of UhpA-binding sites in the Escherichia coli uhpT promoter.

Authors:  Igor N Olekhnovich; Robert J Kadner
Journal:  J Bacteriol       Date:  2002-05       Impact factor: 3.490

4.  Contributions of UP elements and the transcription factor FIS to expression from the seven rrn P1 promoters in Escherichia coli.

Authors:  C A Hirvonen; W Ross; C E Wozniak; E Marasco; J R Anthony; S E Aiyar; V H Newburn; R L Gourse
Journal:  J Bacteriol       Date:  2001-11       Impact factor: 3.490

5.  Repression of deoP2 in Escherichia coli by CytR: conversion of a transcription activator into a repressor.

Authors:  M Shin; S Kang; S J Hyun; N Fujita; A Ishihama; P Valentin-Hansen; H E Choy
Journal:  EMBO J       Date:  2001-10-01       Impact factor: 11.598

6.  UP element-dependent transcription at the Escherichia coli rrnB P1 promoter: positional requirements and role of the RNA polymerase alpha subunit linker.

Authors:  W Meng; T Belyaeva; N J Savery; S J Busby; W E Ross; T Gaal; R L Gourse; M S Thomas
Journal:  Nucleic Acids Res       Date:  2001-10-15       Impact factor: 16.971

Review 7.  Catabolite activator protein: DNA binding and transcription activation.

Authors:  Catherine L Lawson; David Swigon; Katsuhiko S Murakami; Seth A Darst; Helen M Berman; Richard H Ebright
Journal:  Curr Opin Struct Biol       Date:  2004-02       Impact factor: 6.809

8.  Transcriptional activation by Bacillus subtilis ResD: tandem binding to target elements and phosphorylation-dependent and -independent transcriptional activation.

Authors:  Hao Geng; Shunji Nakano; Michiko M Nakano
Journal:  J Bacteriol       Date:  2004-04       Impact factor: 3.490

9.  Site-specific DNA cleavage of synthetic NarL sites by an engineered Escherichia coli NarL protein-1,10-phenanthroline cleaving agent.

Authors:  Gaoping Xiao; Daniel L Cole; Robert P Gunsalus; David S Sigman; Chi-Hong B Chen
Journal:  Protein Sci       Date:  2002-10       Impact factor: 6.725

10.  X-ray crystal structure of Escherichia coli RNA polymerase σ70 holoenzyme.

Authors:  Katsuhiko S Murakami
Journal:  J Biol Chem       Date:  2013-02-06       Impact factor: 5.157
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