Jie Luo1,2, Sarah Frisken3, Ines Machado3, Miaomiao Zhang4, Steve Pieper3, Polina Golland5, Matthew Toews6, Prashin Unadkat3, Alireza Sedghi3, Haoyin Zhou3, Alireza Mehrtash3, Frank Preiswerk3, Cheng-Chieh Cheng3, Alexandra Golby3, Masashi Sugiyama7,8, William M Wells3,5. 1. Brigham and Women's Hospital, Harvard Medical School, 75 Francis St, Boston, MA, 02115, USA. jluo5@bwh.harvard.edu. 2. Graduate School of Frontier Sciences, The University of Tokyo, 5 Chome-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan. jluo5@bwh.harvard.edu. 3. Brigham and Women's Hospital, Harvard Medical School, 75 Francis St, Boston, MA, 02115, USA. 4. Computer Science and Engineering Department, Lehigh University, 19 Memorial Drive West, Bethlehem, PA, 18015, USA. 5. Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, 32 Vassar St, Cambridge, MA, 02139, USA. 6. Ecole de Technologie Superieure, 1100 Rue Notre-Dame Ouest, Montreal, H3C 1K3, Canada. 7. Graduate School of Frontier Sciences, The University of Tokyo, 5 Chome-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan. 8. Center for Advanced Intelligence Project, RIKEN, 1-4-1 Nihonbashi, Chuo-ku, Tokyo, 103-0027, Japan.
Abstract
PURPOSE: Matching points that are derived from features or landmarks in image data is a key step in some medical imaging applications. Since most robust point matching algorithms claim to be able to deal with outliers, users may place high confidence in the matching result and use it without further examination. However, for tasks such as feature-based registration in image-guided neurosurgery, even a few mismatches, in the form of invalid displacement vectors, could cause serious consequences. As a result, having an effective tool by which operators can manually screen all matches for outliers could substantially benefit the outcome of those applications. METHODS: We introduce a novel variogram-based outlier screening method for vectors. The variogram is a powerful geostatistical tool for characterizing the spatial dependence of stochastic processes. Since the spatial correlation of invalid displacement vectors, which are considered as vector outliers, tends to behave differently than normal displacement vectors, they can be efficiently identified on the variogram. RESULTS: We validate the proposed method on 9 sets of clinically acquired ultrasound data. In the experiment, potential outliers are flagged on the variogram by one operator and further evaluated by 8 experienced medical imaging researchers. The matching quality of those potential outliers is approximately 1.5 lower, on a scale from 1 (bad) to 5 (good), than valid displacement vectors. CONCLUSION: The variogram is a simple yet informative tool. While being used extensively in geostatistical analysis, it has not received enough attention in the medical imaging field. We believe there is a good deal of potential for clinically applying the proposed outlier screening method. By way of this paper, we also expect researchers to find variogram useful in other medical applications that involve motion vectors analyses.
PURPOSE: Matching points that are derived from features or landmarks in image data is a key step in some medical imaging applications. Since most robust point matching algorithms claim to be able to deal with outliers, users may place high confidence in the matching result and use it without further examination. However, for tasks such as feature-based registration in image-guided neurosurgery, even a few mismatches, in the form of invalid displacement vectors, could cause serious consequences. As a result, having an effective tool by which operators can manually screen all matches for outliers could substantially benefit the outcome of those applications. METHODS: We introduce a novel variogram-based outlier screening method for vectors. The variogram is a powerful geostatistical tool for characterizing the spatial dependence of stochastic processes. Since the spatial correlation of invalid displacement vectors, which are considered as vector outliers, tends to behave differently than normal displacement vectors, they can be efficiently identified on the variogram. RESULTS: We validate the proposed method on 9 sets of clinically acquired ultrasound data. In the experiment, potential outliers are flagged on the variogram by one operator and further evaluated by 8 experienced medical imaging researchers. The matching quality of those potential outliers is approximately 1.5 lower, on a scale from 1 (bad) to 5 (good), than valid displacement vectors. CONCLUSION: The variogram is a simple yet informative tool. While being used extensively in geostatistical analysis, it has not received enough attention in the medical imaging field. We believe there is a good deal of potential for clinically applying the proposed outlier screening method. By way of this paper, we also expect researchers to find variogram useful in other medical applications that involve motion vectors analyses.
Authors: Ian J Gerard; Marta Kersten-Oertel; Kevin Petrecca; Denis Sirhan; Jeffery A Hall; D Louis Collins Journal: Med Image Anal Date: 2016-08-24 Impact factor: 8.545
Authors: Inês Machado; Matthew Toews; Elizabeth George; Prashin Unadkat; Walid Essayed; Jie Luo; Pedro Teodoro; Herculano Carvalho; Jorge Martins; Polina Golland; Steve Pieper; Sarah Frisken; Alexandra Golby; William Wells Iii; Yangming Ou Journal: Neuroimage Date: 2019-08-22 Impact factor: 6.556
Authors: Evie van der Spoel; Jungyeon Choi; Ferdinand Roelfsema; Saskia le Cessie; Diana van Heemst; Olaf M Dekkers Journal: J Biol Rhythms Date: 2019-06-12 Impact factor: 3.182