| Literature DB >> 30096889 |
Veronica Lanza Cariccio1, Domenico Scionti2, Antonio Raffa3, Renato Iori4, Federica Pollastro5, Francesca Diomede6, Placido Bramanti7, Oriana Trubiani8, Emanuela Mazzon9.
Abstract
Periodontal ligament mesenchymal stem cells (hPDLSCs), as well as all mesenchymal stem cells, show self-renewal, clonogenicity, and multi-tissue differentiation proprieties and can represent a valid support for regenerative medicine. We treated hPDLSCs with a combination of Moringin (MOR) and Cannabidiol (CBD), in order to understand if treatment could improve their survival and their in vitro differentiation capacity. Stem cells survival is fundamental to achieve a successful therapy outcome in the re-implanted tissue of patients. Through NGS transcriptome analysis, we found that combined treatment increased hPDLSCs survival, by inhibition of apoptosis as demonstrated by enhanced expression of anti-apoptotic genes and reduction of pro-apoptotic ones. Moreover, we investigated the possible involvement of PI3K/Akt/mTOR pathway, emphasizing a differential gene expression between treated and untreated cells. Furthermore, hPDLSCs were cultured for 48 h in the presence or absence of CBD and MOR and, after confirming the cellular viability through MTT (3-(4,5-dimethylthiazolyl-2)-2,5-diphenyltetrazoliumbromide) assay, we examined the presence of neuronal markers, through immunofluorescence analysis. We found an increased expression of Nestin and GAP43 (growth associated protein 43) in treated cells. In conclusion, hPDLSCs treated with Moringin and Cannabidiol showed an improved survival capacity and neuronal differentiation potential.Entities:
Keywords: Next Generation Sequencing (NGS); PI3K/Akt/mTOR pathway; apoptosis; cannabidiol (CBD); moringin (MOR); periodontal ligament mesenchymal stem cells (hPDLSCs); transcriptome analysis
Mesh:
Substances:
Year: 2018 PMID: 30096889 PMCID: PMC6121255 DOI: 10.3390/ijms19082341
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Cytofluorimetric analysis of hPDLSCs. In the table, were reported: cell typology, specific markers, and percentage of expression of each marker. All markers of stem cells and mesenchymal stem cells were expressed on the surface, while hematopoietic cell markers were not expressed.
| Cell Lineage | Markers | % Of Expression |
|---|---|---|
| Stem cells | Oct3/4 | 94.3 ± 2.2% |
| Sox-2 | 96.4 ± 0.7% | |
| SSEA-4 | 96.4 ± 2.5% | |
| MSCs | CD29 | 97.8 ± 2.4% |
| CD44 | 95.2 ± 3.3% | |
| CD73 | 96.3 ± 1.1% | |
| CD90 | 95.2 ± 3.1% | |
| CD105 | 96.3 ± 3.2% | |
| Hematopoietic | CD14 | ND |
| Cd34 | ND | |
| CD45 | ND |
Figure 1Morphology of hPDLSCs. (A) Confocal laser scanning observations of untreated hPDLSCs. (B) Confocal laser scanning observations of hPDLSCs treated with the mixture CBD+MOR. Red fluorescence: F-actin; blue fluorescence: nuclei. Scale bar: 5 µm.
Figure 2Cell viability assays. (A) Viability rate of untreated and treated (CBD+MOR) hPDLSCs at different endpoint (24, 48, and 72 h) evaluated using MTT assay. Data are expressed as the mean of optical density. (B) Viability, as determined by Trypan Blue exclusion, of treated and untreated hPDLSCs. Data are expressed as the mean (n = 3) number of cells with 95% confidence limits. * p < 0.05.
Figure 3Immunofluorescence analysis. Immunolabeling with GAP43 in (A) untreated hPDLSCs and (B) treated (CBD+MOR) hPDLSCs. Immunolabeling with neuron-specific NES in (C) untreated hPDLSCs and (D) treated (CBD+MOR) hPDLSCs. Immunolabeling with neuron-specific BDNF in (E) untreated hPDLSCs and (F) treated (CBD+MOR) hPDLSCs. Immunolabeling with neuron-specific GFAP in (G) untreated hPDLSCs and (H) treated (CBD+MOR) hPDLSCs. Histograms represent the percentage of positive cells for the specific markers. ** p < 0.01, *** p < 0.001 significant difference of hPDLSCs treated with CBD and MOR compared to untreated cells. Green fluorescence: F-actin; red fluorescence: specific markers; blue fluorescence: nuclei. Scale bar: 5 µm.
Figure 4Gene Ontology Analysis of 6843 genes differentially expressed between treated hPDLSCs (MOR+CBD) and untreated cells (CTR).
Upregulated genes involved in “Inhibition of Apoptosis”.
| Gene | Name | CTR | MOR+CBD | Log2-FoldChange | |
|---|---|---|---|---|---|
|
| BCL2 related protein A1 | 0.0001 | 2.7356 | 14.739 | 0.000108528 |
|
| phosphoribosyl pyrophosphate synthetase 1 | 12.773 | 82.505 | 2.691 | 0.000108528 |
|
| cyclin dependent kinase 1 | 1.601 | 9.994 | 2.642 | 0.000108528 |
|
| protein kinase AMP-activated non-catalytic subunit gamma 2 | 3.731 | 16.269 | 2.124 | 0.000108528 |
|
| cytochrome c, somatic | 4.446 | 18.7684 | 2.077 | 0.000108528 |
|
| TNF alpha induced protein 3 | 0.81318 | 3.40641 | 2.066 | 0.000108528 |
|
| BCL2 like 1 | 2.45308 | 9.41279 | 1.940 | 0.000108528 |
|
| cell division cycle 37 | 51.8182 | 194.202 | 1.906 | 0.000108528 |
|
| CASP2 and RIPK1 domain containing adaptor with death domain | 4.94457 | 11.2444 | 1.185 | 0.000679197 |
|
| heat shock protein family B (small) member 1 | 279.982 | 688.126 | 1.297 | 0.000108528 |
|
| heat shock protein 90 alpha family class A member 1 | 271.592 | 621.726 | 1.195 | 0.000108528 |
|
| phorbol-12-myristate-13-acetate-induced protein 1 | 1.755 | 3.424 | 0.964 | 0.0248542 |
|
| mitogen-activated protein kinase 1 | 37.1635 | 61.9931 | 0.738 | 0.000108528 |
|
| X-linked inhibitor of apoptosis | 6.18581 | 10.1329 | 0.712 | 0.000108528 |
|
| cytochrome c1 | 27.7517 | 43.9185 | 0.662 | 0.000108528 |
|
| heat shock protein family A (Hsp70) member 4 | 59.0696 | 88.7283 | 0.586 | 0.000108528 |
|
| CYLD lysine 63 deubiquitinase | 11.8515 | 17.1827 | 0.536 | 0.000108528 |
|
| mitogen-activated protein kinase 3 | 43.4258 | 61.3592 | 0.499 | 0.000108528 |
|
| Caspase 2 | 6.65398 | 9.33578 | 0.488 | 0.000679197 |
|
| Rho associated coiled-coil containing protein kinase 1 | 15.711 | 20.961 | 0.416 | 0.000108528 |
|
| mitogen-activated protein kinase kinase kinase 5 | 4.264 | 5.599 | 0.393 | 0.0185603 |
|
| NFKB inhibitor alpha | 30.3404 | 38.8837 | 0.358 | 0.00254092 |
|
| apoptosis inducing factor mitochondria associated 1 | 22.697 | 28.454 | 0.3579 | 0.00342361 |
|
| glycogen synthase kinase 3 beta | 7.29297 | 9.04263 | 0.310 | 0.00350034 |
|
| protein kinase AMP-activated non-catalytic subunit gamma 1 | 22.7303 | 27.4994 | 0.275 | 0.0360551 |
|
| glycogen synthase kinase 3 alpha | 24.6326 | 29.3496 | 0.253 | 0.0231286 |
In the table, we have reported for each gene the expression value, calculated as FPKM (Fragments per Kilobase of exon model per Million mapped fragments), both in untreated (CTR) and treated cells (MOR+CBD), Log 2-fold change positive values (upregulated genes), and a q-value (FDR) < 0.05 (statistical significance). Anti-apoptotic genes: BCL2A1, TNFAIP3, BCL2L1, HSPB1, HSP90AA1, MAPK1, XIAP, GSK3A/B, MCL1, BIRC2, TP53, CFLAR; Pro-apoptotic genes: CYCS, CYC1, CRADD, CASP2, GSK3A/B, DIABLO, APAF1, IKBKB, NFKB1, RIPK1, BAD, CASP8, HTRA2, BAX, CASP6, CASP10, CASP9, CASP8.
Downregulated genes involved in “Inhibition of Apoptosis”.
| Gene | Name | CTR | MOR+CBD | Log2-FoldChange | |
|---|---|---|---|---|---|
|
| MCL1, BCL2 family apoptosis regulator | 15.5899 | 13.3424 | −0.224 | 0.0365845 |
|
| protein kinase cAMP-activated catalytic subunit alpha | 36.0344 | 29.1389 | −0.306 | 0.000769756 |
|
| Jun proto-oncogene, AP-1 transcription factor subunit | 45.231 | 35.688 | −0.341 | 0.000108528 |
|
| B-Raf proto-oncogene, serine/threonine kinase | 18.1853 | 14.3317 | −0.343 | 0.00374229 |
|
| diablo IAP-binding mitochondrial protein | 24.9695 | 19.2303 | −0.377 | 0.0018832 |
|
| apoptotic peptidase activating factor 1 | 5.49731 | 4.023 | −0.450 | 0.00146168 |
|
| proto-oncogene, GTPase | 9.22853 | 6.45952 | −0.514 | 0.000209655 |
|
| phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha | 17.6961 | 12.3847 | −0.515 | 0.000108528 |
|
| phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta | 3.9361 | 2.71759 | −0.534 | 0.00600177 |
|
| inhibitor of nuclear factor kappa B kinase subunit beta | 9.88765 | 6.66404 | −0.569 | 0.000108528 |
|
| phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta | 11.4445 | 7.6164 | −0.587 | 0.000108528 |
|
| amyloid beta precursor protein | 812.971 | 538.076 | −0.595 | 0.000108528 |
|
| nuclear factor kappa B subunit 1 | 9.63897 | 6.14856 | −0.648 | 0.000108528 |
|
| receptor interacting serine/threonine kinase 1 | 8.97176 | 5.47512 | −0.712 | 0.000108528 |
|
| Janus kinase 2 | 3.17143 | 1.92764 | −0.718 | 0.00382528 |
|
| Rho associated coiled-coil containing protein kinase 2 | 25.266 | 15.313 | −0.722 | 0.000108528 |
|
| TNFRSF1A associated via death domain | 6.42414 | 3.88442 | −0.726 | 0.0318132 |
|
| BCL2 associated agonist of cell death | 12.1113 | 7.0611 | −0.778 | 0.0138987 |
|
| signal transducer and activator of transcription 1 | 220.682 | 120.078 | −0.878 | 0.000108528 |
|
| signal transducer and activator of transcription 3 | 60.0522 | 32.1874 | −0.900 | 0.000108528 |
|
| caspase 8 | 14.8563 | 7.94494 | −0.903 | 0.000108528 |
|
| baculoviral IAP repeat containing 2 | 23.7492 | 11.4038 | −1.058 | 0.000108528 |
|
| checkpoint kinase 2 | 9.375 | 4.444 | −1.077 | 0.000209655 |
|
| p53-induced death domain protein 1 | 2.819 | 1.274 | −1.145 | 0.00453657 |
|
| inhibitor of nuclear factor kappa B kinase subunit gamma | 20.3793 | 9.20785 | −1.146 | 0.000108528 |
|
| HtrA serine peptidase 2 | 16.330 | 7.278 | −1.166 | 0.000108528 |
|
| BCL2 associated X, apoptosis regulator | 72.4174 | 31.9437 | −1.181 | 0.000108528 |
|
| ATM serine/threonine kinase | 17.969 | 7.731 | −1.216 | 0.000108528 |
|
| tumor protein p53 | 21.8171 | 8.8547 | −1.301 | 0.000108528 |
|
| TNF receptor superfamily member 1A | 130.525 | 52.1762 | −1.323 | 0.000108528 |
|
| Caspase 6 | 5.42611 | 2.11284 | −1.361 | 0.00318817 |
|
| Caspase 10 | 2.91088 | 0.99445 | −1.5495 | 0.00245968 |
|
| Caspase 9 | 3.91636 | 1.29947 | −1.591 | 0.000209655 |
|
| CASP8 and FADD like apoptosis regulator | 35.1508 | 11.6351 | −1.595 | 0.000108528 |
|
| phosphatase and tensin homolog | 50.3299 | 15.3705 | −1.711 | 0.000108528 |
|
| Caspase 7 | 11.4138 | 2.89071 | −1.981 | 0.000108528 |
In the table, we have reported for each gene the expression value, calculated as FPKM (Fragments Per Kilobase of exon model per Million mapped fragments), both in untreated (CTR) and treated cells (MOR+CBD), Log 2-fold change negative values (downregulated genes), and a q-value (FDR) < 0.05 (statistical significance).
Up- and downregulated genes, involved in the “Cell death receptor signaling” pathway.
| Gene | Name | CTR | MOR+CBD | Log2-Fold Change | |
|---|---|---|---|---|---|
|
| TNF receptor superfamily member 10a | 3.73692 | 10.4229 | 1.47983 | 0.000108528 |
|
| mitogen-activated protein kinase kinase 1 | 25.1462 | 50.4431 | 1.00432 | 0.000108528 |
|
| X-linked inhibitor of apoptosis | 6.18581 | 10.1329 | 0.71202 | 0.000108528 |
|
| CYLD lysine 63 deubiquitinase | 11.8515 | 17.1827 | 0.53589 | 0.000108528 |
|
| conserved helix-loop-helix ubiquitous kinase | 11.3559 | 15.2974 | 0.42985 | 0.000494671 |
|
| Rho associated coiled-coil containing protein kinase 1 | 15.7113 | 20.9609 | 0.4159 | 0.000108528 |
|
| RELA proto-oncogene, NF-kB subunit | 18.2587 | 24.1675 | 0.40449 | 0.00146168 |
|
| mitogen-activated protein kinase kinase kinase 5 | 4.26421 | 5.59967 | 0.39306 | 0.0185603 |
|
| NFKB inhibitor alpha | 30.3404 | 38.8837 | 0.35793 | 0.00254092 |
|
| myosin phosphatase Rho interacting protein | 21.5258 | 18.5193 | −0.217 | 0.000108528 |
|
| poly(ADP-ribose) polymerase 1 | 45.8356 | 39.1245 | −0.2284 | 0.000494671 |
|
| apoptotic chromatin condensation inducer 1 | 30.3285 | 25.0361 | −0.2767 | 0.000494671 |
|
| diablo IAP-binding mitochondrial protein | 24.9695 | 19.2303 | −0.3768 | 0.0018832 |
|
| apoptotic peptidase activating factor 1 | 5.49731 | 4.023 | −0.4505 | 0.00146168 |
|
| RPA interacting protein | 12.2724 | 8.85997 | −0.47 | 0.0253385 |
|
| Fas cell surface death receptor | 48.1152 | 33.0363 | −0.5424 | 0.000108528 |
|
| inhibitor of nuclear factor kappa B kinase subunit beta | 9.88765 | 6.66404 | −0.5692 | 0.000108528 |
|
| receptor interacting serine/threonine kinase 1 | 8.97176 | 5.47512 | −0.7125 | 0.000108528 |
|
| TNFRSF1A associated via death domain | 6.42414 | 3.88442 | −0.7258 | 0.0318132 |
|
| mitogen-activated protein kinase kinase kinase kinase 4 | 128.313 | 75.8702 | −0.7581 | 0.000108528 |
|
| caspase 8 | 14.8563 | 7.94494 | −0.903 | 0.000108528 |
|
| baculoviral IAP repeat containing 2 | 23.7492 | 11.4038 | −1.0584 | 0.000108528 |
|
| inhibitor of nuclear factor kappa B kinase subunit gamma | 20.3793 | 9.20785 | −1.1462 | 0.000108528 |
|
| TNF receptor superfamily member 10b | 94.0163 | 40.7967 | −1.2045 | 0.000108528 |
|
| lamin A/C | 1373.63 | 587.557 | −1.2252 | 0.000108528 |
|
| TNF receptor superfamily member 1A | 130.525 | 52.1762 | −1.3229 | 0.000108528 |
|
| Caspase 6 | 5.42611 | 2.11284 | −1.3607 | 0.00318817 |
|
| Caspase 10 | 2.91088 | 0.99445 | −1.5495 | 0.00245968 |
|
| Caspase 9 | 3.91636 | 1.29947 | −1.5916 | 0.000209655 |
|
| CASP8 and FADD like apoptosis regulator | 35.1508 | 11.6351 | −1.5951 | 0.000108528 |
|
| Caspase 7 | 11.4138 | 2.89071 | −1.9813 | 0.000108528 |
In the table, we have reported: the nomenclature, the whole name, the value of gene expression (FPKM) in both untreated (CTR) and treated cells (MOR+CBD), Log2-fold change values, and q values (FDR) < 0.05.
Up- and downregulated genes, involved in “mTOR pathway”.
| Gene | Name | CTR | MOR+CBD | Log2-Fold Change | |
|---|---|---|---|---|---|
|
| serum/glucocorticoid regulated kinase 1 | 4.69263 | 106.74 | 4.50757 | 0.000108528 |
|
| cell division cycle 37 | 51.8182 | 194.202 | 1.90603 | 0.000108528 |
|
| thioredoxin related transmembrane protein 2 | 25.587 | 84.3633 | 1.72121 | 0.000108528 |
|
| Baculoviral IAP repeat containing 5 | 0.876953 | 2.84342 | 1.69706 | 0.00508584 |
|
| Ras homolog, mTORC1 binding | 15.1136 | 46.575 | 1.62371 | 0.000108528 |
|
| glycerol kinase | 5.78668 | 13.9776 | 1.27231 | 0.000108528 |
|
| tyrosine3-monooxygenase/tryptophan 5-monooxygenase activation protein beta | 15.6913 | 35.0565 | 1.15972 | 0.000108528 |
|
| nucleolin | 178.099 | 377.828 | 1.08505 | 0.000108528 |
|
| ubiquitin conjugating enzyme E2 D1 | 4.46588 | 8.44974 | 0.919964 | 0.000108528 |
|
| AKT1 substrate 1 | 5.66925 | 9.57204 | 0.755668 | 0.00262175 |
|
| TSC complex subunit 1 | 7.62739 | 12.8277 | 0.75 | 0.000108528 |
|
| mitogen-activated protein kinase 1 | 37.1635 | 61.9931 | 0.73822 | 0.000108528 |
|
| growth factor receptor bound protein 2 | 17.0713 | 28.1494 | 0.721528 | 0.000108528 |
|
| X-linked inhibitor of apoptosis | 6.18581 | 10.1329 | 0.712017 | 0.000108528 |
|
| eukaryotic translation initiation factor 4E binding protein 1 | 14.858 | 24.2207 | 0.705002 | 0.00318817 |
|
| C-terminal Src kinase | 6.02989 | 9.54202 | 0.662163 | 0.00262175 |
|
| NADH:ubiquinone oxidoreductase subunit A6 | 44.3725 | 67.7367 | 0.610273 | 0.000108528 |
|
| vaccinia related kinase 1 | 11.1566 | 16.9088 | 0.599877 | 0.00229935 |
|
| isocitrate dehydrogenase 3 (NAD(+)) alpha | 6.79514 | 10.2507 | 0.593141 | 0.00245968 |
|
| RPTOR independent companion of MTOR complex 2 | 4.49855 | 6.77801 | 0.591403 | 0.000108528 |
|
| isocitrate dehydrogenase 3 (NAD(+)) gamma | 24.8055 | 36.6474 | 0.56305 | 0.000108528 |
|
| ribosomal protein S7 | 1220.66 | 1745.62 | 0.516083 | 0.000108528 |
|
| mitogen-activated protein kinase 3 | 43.4258 | 61.3592 | 0.498727 | 0.000108528 |
|
| N(alpha)-acetyltransferase 10, NatA catalytic subunit | 65.211 | 90.1417 | 0.467079 | 0.000108528 |
|
| mitogen-activated protein kinase associated protein 1 | 24.7763 | 34.1371 | 0.462382 | 0.000108528 |
|
| protein phosphatase 1 catalytic subunit alpha | 69.6542 | 95.9494 | 0.462064 | 0.000108528 |
|
| ubiquitin C | 643.861 | 871.181 | 0.436224 | 0.000108528 |
|
| conserved helix-loop-helix ubiquitous kinase | 11.3559 | 15.2974 | 0.429848 | 0.000494671 |
|
| RELA proto-oncogene, NF-kB subunit | 18.2587 | 24.1675 | 0.404486 | 0.00146168 |
|
| ATPase Na+/K+ transporting subunit alpha 1 | 107.718 | 138.718 | 0.364897 | 0.000108528 |
|
| myosin light chain 12B | 225.236 | 289.645 | 0.362849 | 0.000108528 |
|
| NFKB inhibitor alpha | 30.3404 | 38.8837 | 0.357928 | 0.00254092 |
|
| glycogen synthase kinase 3 beta | 7.29297 | 9.04263 | 0.310236 | 0.00350034 |
|
| protein kinase AMP-activated catalytic subunit alpha 1 | 10.8385 | 12.9494 | 0.256722 | 0.000769756 |
|
| Syndecan binding protein | 98.2519 | 112.121 | 0.190497 | 0.000494671 |
|
| mechanistic target of rapamycin kinase | 10.8825 | 12.325 | 0.179576 | 0.0270992 |
|
| cyclin dependent kinase inhibitor 1A | 189.675 | 171.028 | −0.14929 | |
|
| tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta | 36.9941 | 31.2586 | −0.24304 | 0.00270215 |
|
| insulin receptor substrate 1 | 18.1379 | 15.1972 | −0.25521 | 0.000108528 |
|
| B-Raf proto-oncogene, serine/threonine kinase | 18.1853 | 14.3317 | −0.34356 | 0.00374229 |
|
| integrin subunit beta 1 | 659.512 | 498.137 | −0.40486 | 0.000108528 |
|
| SOS Ras/Rho guanine nucleotide exchange factor 2 | 7.55781 | 5.65783 | −0.41772 | 0.00294683 |
|
| apoptotic peptidase activating factor 1 | 5.49731 | 4.023 | −0.45045 | 0.00146168 |
|
| unc-51 like autophagy activating kinase 1 | 4.66539 | 3.33227 | −0.48549 | 0.0102621 |
|
| phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha | 17.6961 | 12.3847 | −0.5149 | 0.000108528 |
|
| NRAS proto-oncogene, GTPase | 9.22853 | 6.45952 | −0.51467 | 0.000209655 |
|
| TSC complex subunit 2 | 37.2339 | 25.8014 | −0.52917 | 0.000108528 |
|
| ribosomal protein S6 kinase B1 | 7.68103 | 5.28824 | −0.53851 | 0.000306871 |
|
| inhibitor of nuclear factor kappa B kinase subunit beta | 9.88765 | 6.66404 | −0.56923 | 0.000108528 |
|
| ribosomal protein S6 kinase A3 | 12.1111 | 7.90192 | −0.61606 | 0.000108528 |
|
| peroxiredoxin 4 | 141.666 | 91.3201 | −0.63349 | 0.000108528 |
|
| growth factor receptor bound protein 10 | 5.92727 | 3.55434 | −0.73779 | 0.000209655 |
|
| ras homolog family member D | 8.51073 | 4.80959 | −0.82337 | 0.0175082 |
|
| CAP-Gly domain containing linker protein 1 | 24.6133 | 13.7533 | −0.83966 | 0.000108528 |
|
| mitogen-activated protein kinase kinase 7 | 4.97253 | 2.44847 | −1.0221 | 0.000402551 |
|
| SOS Ras/Rac guanine nucleotide exchange factor | 26.454 | 12.3817 | −1.09527 | 0.000108528 |
|
| inhibitor of nuclear factor kappa B kinase subunit gamma | 20.3793 | 9.20785 | −1.14617 | 0.000108528 |
|
| amyloid beta precursor protein binding family B member 3 | 3.31305 | 1.35579 | −1.28903 | 0.00893961 |
|
| tumor protein p53 | 21.8171 | 8.8547 | −1.30095 | 0.000108528 |
|
| nuclear factor, interleukin 3 regulated | 7.77916 | 3.03723 | −1.35686 | 0.000108528 |
|
| phosphatase and tensin homolog | 50.3299 | 15.3705 | −1.71126 | 0.000108528 |
|
| DNA damage inducible transcript 4 | 18.464 | 3.98013 | −2.21383 | 0.000108528 |
|
| Wnt family member 5A | 69.3887 | 8.13031 | −3.09332 | 0.000108528 |
In table, we have reported: the nomenclature, the whole name, the gene expression value (FPKM) in untreated (CTR) and treated cells (MOR+CBD), Log2-fold change values, and q values (FDR) < 0.05.
Up- and downregulated genes, involved in “PI3K/Akt/mTOR pathway”.
| Gene | Name | CTR | MOR+CBD | Log2-Fold Change | |
|---|---|---|---|---|---|
|
| BCL2 related protein A1 | 0.0001 | 2.73565 | 14.73959 | 0.000108528 |
|
| serum/glucocorticoid regulated kinase 1 | 4.69263 | 106.74 | 4.50757 | 0.000108528 |
|
| cyclin dependent kinase 1 | 1.60127 | 9.99442 | 2.64191 | 0.000108528 |
|
| cyclin D1 | 57.5334 | 289.455 | 2.33087 | 0.000108528 |
|
| BCL2 like 1 | 2.45308 | 9.41279 | 1.94003 | 0.000108528 |
|
| MYC proto-oncogene, bHLH transcription factor | 5.20354 | 19.3543 | 1.89509 | 0.000108528 |
|
| Ras homolog, mTORC1 binding | 15.1136 | 46.575 | 1.62371 | 0.000108528 |
|
| BRCA1, DNA repair associated | 1.39172 | 3.87502 | 1.47734 | 0.000108528 |
|
| glycogen synthase 1 | 20.1343 | 40.8951 | 1.02227 | 0.000108528 |
|
| CREB regulated transcription coactivator 2 | 7.74262 | 14.2376 | 0.87881 | 0.000108528 |
|
| AKT1 substrate 1 | 5.66925 | 9.57204 | 0.755668 | 0.00262175 |
|
| TSC complex subunit 1 | 7.62739 | 12.8277 | 0.75 | 0.000108528 |
|
| mitogen-activated protein kinase 1 | 37.1635 | 61.9931 | 0.73822 | 0.000108528 |
|
| eukaryotic translation initiation factor 4E binding protein 1 | 14.858 | 24.2207 | 0.705002 | 0.00318817 |
|
| ribosomal protein S6 kinase B2 | 10.6792 | 16.799 | 0.65357 | 0.00129168 |
|
| cAMP responsive element binding protein 3 | 15.8771 | 24.3326 | 0.615947 | 0.000108528 |
|
| eukaryotic translation initiation factor 4E | 13.0091 | 17.7561 | 0.448797 | 0.000108528 |
|
| NFKB inhibitor alpha | 30.3404 | 38.8837 | 0.357928 | 0.00254092 |
|
| glycogen synthase kinase 3 beta | 7.29297 | 9.04263 | 0.310236 | 0.00350034 |
|
| protein kinase AMP-activated catalytic subunit alpha 1 | 10.8385 | 12.9494 | 0.256722 | 0.0156024 |
|
| glycogen synthase kinase 3 alpha | 24.6326 | 29.3496 | 0.252774 | 0.0231286 |
|
| mechanistic target of rapamycin kinase | 10.8825 | 12.325 | 0.179576 | 0.0270992 |
|
| ribosomal protein S6 | 759.592 | 800.781 | 0.0761832 | 0.0354641 |
|
| MCL1, BCL2 family apoptosis regulator | 15.5899 | 13.3424 | −0.224596 | 0.0365845 |
|
| B-Raf proto-oncogene, serine/threonine kinase | 18.1853 | 14.3317 | −0.343559 | 0.00374229 |
|
| eukaryotic translation initiation factor 4B | 108.227 | 84.7943 | −0.352014 | 0.000108528 |
|
| phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha | 17.6961 | 12.3847 | −0.514879 | 0.000108528 |
|
| TSC complex subunit 2 | 37.2339 | 25.8014 | −0.529167 | 0.000108528 |
|
| phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta | 3.9361 | 2.71759 | −0.534435 | 0.00600177 |
|
| ribosomal protein S6 kinase B1 | 7.68103 | 5.28824 | −0.538514 | 0.000306871 |
|
| inhibitor of nuclear factor kappa B kinase subunit beta | 9.88765 | 6.66404 | −0.569232 | 0.000108528 |
|
| nuclear factor kappa B subunit 1 | 9.63897 | 6.14856 | −0.64863 | 0.000108528 |
|
| RB transcriptional corepressor like 2 | 12.9876 | 7.44702 | −0.802397 | 0.000108528 |
|
| mitogen-activated protein kinase kinase 7 | 4.97253 | 2.44847 | −1.0221 | 0.000402551 |
|
| tumor protein p53 | 21.8171 | 8.8547 | −1.30095 | 0.000108528 |
|
| phosphoenolpyruvate carboxykinase 2, mitochondrial | 10.9312 | 4.17877 | −1.38731 | 0.000108528 |
|
| Caspase 9 | 3.91636 | 1.29947 | −1.59159 | 0.000209655 |
|
| phosphatase and tensin homolog | 50.3299 | 15.3705 | −1.71126 | 0.000108528 |
In table, we have reported: the nomenclature, the whole name, the gene expression values in untreated (CTR) or treated cells (MOR+CBD), Log2-fold change values, and q values (FDR) < 0.05.