Literature DB >> 30094995

DNA-Corralled Nanodiscs for the Structural and Functional Characterization of Membrane Proteins and Viral Entry.

Zhao Zhao1, Meng Zhang2, James M Hogle2, William M Shih2,1,3, Gerhard Wagner2, Mahmoud L Nasr2.   

Abstract

Here we present a modular method for manufacturing large-sized nanodiscs using DNA-origami barrels as scaffolding corrals. Large-sized nanodiscs can be produced by first decorating the inside of DNA barrels with small lipid-bilayer nanodiscs, which open up when adding extra lipid to form large nanodiscs of diameters ∼45 or ∼70 nm as prescribed by the enclosing barrel dimension. Densely packed membrane protein arrays are then reconstituted within these large nanodiscs for potential structure determination. Furthermore, we demonstrate the potential of these nanodiscs as model membranes to study poliovirus entry.

Entities:  

Mesh:

Substances:

Year:  2018        PMID: 30094995      PMCID: PMC6206850          DOI: 10.1021/jacs.8b04638

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  39 in total

1.  Picornaviruses.

Authors:  Tobias J Tuthill; Elisabetta Groppelli; James M Hogle; David J Rowlands
Journal:  Curr Top Microbiol Immunol       Date:  2010       Impact factor: 4.291

2.  Bioinspired, Size-Tunable Self-Assembly of Polymer-Lipid Bilayer Nanodiscs.

Authors:  Thirupathi Ravula; Sudheer Kumar Ramadugu; Giacomo Di Mauro; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2017-08-10       Impact factor: 15.336

3.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

4.  Reconstitution of the Cytb5-CytP450 Complex in Nanodiscs for Structural Studies using NMR Spectroscopy.

Authors:  Meng Zhang; Rui Huang; Rose Ackermann; Sang-Choul Im; Lucy Waskell; Anna Schwendeman; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2016-02-29       Impact factor: 15.336

5.  Multi-enzyme complexes on DNA scaffolds capable of substrate channelling with an artificial swinging arm.

Authors:  Jinglin Fu; Yuhe Renee Yang; Alexander Johnson-Buck; Minghui Liu; Yan Liu; Nils G Walter; Neal W Woodbury; Hao Yan
Journal:  Nat Nanotechnol       Date:  2014-05-25       Impact factor: 39.213

Review 6.  Recent advances in nanodisc technology for membrane protein studies (2012-2017).

Authors:  John E Rouck; John E Krapf; Jahnabi Roy; Hannah C Huff; Aditi Das
Journal:  FEBS Lett       Date:  2017-07-06       Impact factor: 4.124

7.  Disassembly of nanodiscs with cholate.

Authors:  Amy Y Shih; Peter L Freddolino; Stephen G Sligar; Klaus Schulten
Journal:  Nano Lett       Date:  2007-05-16       Impact factor: 11.189

8.  Dynamics and number of trans-SNARE complexes determine nascent fusion pore properties.

Authors:  Huan Bao; Debasis Das; Nicholas A Courtney; Yihao Jiang; Joseph S Briguglio; Xiaochu Lou; Daniel Roston; Qiang Cui; Baron Chanda; Edwin R Chapman
Journal:  Nature       Date:  2018-01-31       Impact factor: 49.962

9.  Micelles, Bicelles, and Nanodiscs: Comparing the Impact of Membrane Mimetics on Membrane Protein Backbone Dynamics.

Authors:  Lukas Frey; Nils-Alexander Lakomek; Roland Riek; Stefan Bibow
Journal:  Angew Chem Int Ed Engl       Date:  2016-11-24       Impact factor: 15.336

10.  Structure of the outer mitochondrial membrane: ordered arrays of porelike subunits in outer-membrane fractions from Neurospora crassa mitochondria.

Authors:  C A Mannella
Journal:  J Cell Biol       Date:  1982-09       Impact factor: 10.539

View more
  9 in total

1.  Programmable Nanodisc Patterning by DNA Origami.

Authors:  Zhao Zhang; Edwin R Chapman
Journal:  Nano Lett       Date:  2020-07-15       Impact factor: 11.189

Review 2.  Engineering Lipid Membranes with Programmable DNA Nanostructures.

Authors:  Qi Shen; Michael W Grome; Yang Yang; Chenxiang Lin
Journal:  Adv Biosyst       Date:  2019-12-09

3.  One-step construction of circularized nanodiscs using SpyCatcher-SpyTag.

Authors:  Shanwen Zhang; Qian Ren; Scott J Novick; Timothy S Strutzenberg; Patrick R Griffin; Huan Bao
Journal:  Nat Commun       Date:  2021-09-14       Impact factor: 17.694

4.  DNA Origami Post-Processing by CRISPR-Cas12a.

Authors:  Qiancheng Xiong; Chun Xie; Zhao Zhang; Longfei Liu; John T Powell; Qi Shen; Chenxiang Lin
Journal:  Angew Chem Int Ed Engl       Date:  2020-01-28       Impact factor: 15.336

Review 5.  Large Nanodiscs: A Potential Game Changer in Structural Biology of Membrane Protein Complexes and Virus Entry.

Authors:  Krishna M Padmanabha Das; William M Shih; Gerhard Wagner; Mahmoud L Nasr
Journal:  Front Bioeng Biotechnol       Date:  2020-06-12

Review 6.  The Fusion of Lipid and DNA Nanotechnology.

Authors:  Es Darley; Jasleen Kaur Daljit Singh; Natalie A Surace; Shelley F J Wickham; Matthew A B Baker
Journal:  Genes (Basel)       Date:  2019-12-03       Impact factor: 4.096

7.  Complex multicomponent patterns rendered on a 3D DNA-barrel pegboard.

Authors:  Shelley F J Wickham; Alexander Auer; Jianghong Min; Nandhini Ponnuswamy; Johannes B Woehrstein; Florian Schueder; Maximilian T Strauss; Jörg Schnitzbauer; Bhavik Nathwani; Zhao Zhao; Steven D Perrault; Jaeseung Hahn; Seungwoo Lee; Maartje M Bastings; Sarah W Helmig; Anne Louise Kodal; Peng Yin; Ralf Jungmann; William M Shih
Journal:  Nat Commun       Date:  2020-11-13       Impact factor: 14.919

Review 8.  Emerging applications at the interface of DNA nanotechnology and cellular membranes: Perspectives from biology, engineering, and physics.

Authors:  Weitao Wang; D Sebastian Arias; Markus Deserno; Xi Ren; Rebecca E Taylor
Journal:  APL Bioeng       Date:  2020-12-08

9.  Developing Nanodisc-ID for label-free characterizations of membrane proteins.

Authors:  Huan Bao
Journal:  Commun Biol       Date:  2021-04-30
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.