Literature DB >> 30087181

Regulatory element in fibrin triggers tension-activated transition from catch to slip bonds.

Rustem I Litvinov1,2, Olga Kononova3,4, Artem Zhmurov4,5, Kenneth A Marx3, Valeri Barsegov6,4, D Thirumalai7, John W Weisel8.   

Abstract

Fibrin formation and mechanical stability are essential in thrombosis and hemostasis. To reveal how mechanical load impacts fibrin, we carried out optical trap-based single-molecule forced unbinding experiments. The strength of noncovalent A:a knob-hole bond stabilizing fibrin polymers first increases with tensile force (catch bonds) and then decreases with force when the force exceeds a critical value (slip bonds). To provide the structural basis of catch-slip-bond behavior, we analyzed crystal structures and performed molecular modeling of A:a knob-hole complex. The movable flap (residues γ295 to γ305) containing the weak calcium-binding site γ2 serves as a tension sensor. Flap dissociation from the B domain in the γ-nodule and translocation to knob 'A' triggers hole 'a' closure, resulting in the increase of binding affinity and prolonged bond lifetimes. The discovery of biphasic kinetics of knob-hole bond rupture is quantitatively explained by using a theory, formulated in terms of structural transitions in the binding pocket between the low-affinity (slip) and high-affinity (catch) states. We provide a general framework to understand the mechanical response of protein pairs capable of tension-induced remodeling of their association interface. Strengthening of the A:a knob-hole bonds at 30- to 40-pN forces might favor formation of nascent fibrin clots subject to hydrodynamic shear in vivo.

Entities:  

Keywords:  GPU computing; catch-slip bond; fibrin polymerization; fluctuating bottleneck; interface remodeling

Mesh:

Substances:

Year:  2018        PMID: 30087181      PMCID: PMC6112739          DOI: 10.1073/pnas.1802576115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

1.  A structure-based sliding-rebinding mechanism for catch bonds.

Authors:  Jizhong Lou; Cheng Zhu
Journal:  Biophys J       Date:  2006-12-01       Impact factor: 4.033

2.  Molecular mechanisms, thermodynamics, and dissociation kinetics of knob-hole interactions in fibrin.

Authors:  Olga Kononova; Rustem I Litvinov; Artem Zhmurov; Andrey Alekseenko; Chia Ho Cheng; Silvi Agarwal; Kenneth A Marx; John W Weisel; Valeri Barsegov
Journal:  J Biol Chem       Date:  2013-05-28       Impact factor: 5.157

Review 3.  Biophysics of catch bonds.

Authors:  Wendy E Thomas; Viola Vogel; Evgeni Sokurenko
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

4.  Crystal structure of a 30 kDa C-terminal fragment from the gamma chain of human fibrinogen.

Authors:  V C Yee; K P Pratt; H C Côté; I L Trong; D W Chung; E W Davie; R E Stenkamp; D C Teller
Journal:  Structure       Date:  1997-01-15       Impact factor: 5.006

5.  Influence of calcium ion on the binding of fibrin amino terminal peptides to fibrinogen.

Authors:  A P Laudano; R F Doolittle
Journal:  Science       Date:  1981-04-24       Impact factor: 47.728

Review 6.  Fibrin Formation, Structure and Properties.

Authors:  John W Weisel; Rustem I Litvinov
Journal:  Subcell Biochem       Date:  2017

7.  Platelet glycoprotein Ibalpha forms catch bonds with human WT vWF but not with type 2B von Willebrand disease vWF.

Authors:  Tadayuki Yago; Jizhong Lou; Tao Wu; Jun Yang; Jonathan J Miner; Leslie Coburn; José A López; Miguel A Cruz; Jing-Fei Dong; Larry V McIntire; Rodger P McEver; Cheng Zhu
Journal:  J Clin Invest       Date:  2008-09       Impact factor: 14.808

8.  Mechanical transition from α-helical coiled coils to β-sheets in fibrin(ogen).

Authors:  Artem Zhmurov; Olga Kononova; Rustem I Litvinov; Ruxandra I Dima; Valeri Barsegov; John W Weisel
Journal:  J Am Chem Soc       Date:  2012-09-25       Impact factor: 15.419

9.  Demonstration of catch bonds between an integrin and its ligand.

Authors:  Fang Kong; Andrés J García; A Paul Mould; Martin J Humphries; Cheng Zhu
Journal:  J Cell Biol       Date:  2009-06-29       Impact factor: 10.539

10.  Catch-bond mechanism of the bacterial adhesin FimH.

Authors:  Maximilian M Sauer; Roman P Jakob; Jonathan Eras; Sefer Baday; Deniz Eriş; Giulio Navarra; Simon Bernèche; Beat Ernst; Timm Maier; Rudi Glockshuber
Journal:  Nat Commun       Date:  2016-03-07       Impact factor: 14.919

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  7 in total

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Authors:  Yongzhi Qiu; David R Myers; Wilbur A Lam
Journal:  Nat Rev Mater       Date:  2019-03-28       Impact factor: 66.308

Review 2.  Neutralizing Antibodies Against Allosteric Proteins: Insights From a Bacterial Adhesin.

Authors:  Evgeni V Sokurenko; Veronika Tchesnokova; Gianluca Interlandi; Rachel Klevit; Wendy E Thomas
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3.  Fibrin protofibril packing and clot stability are enhanced by extended knob-hole interactions and catch-slip bonds.

Authors:  Nathan L Asquith; Cédric Duval; Artem Zhmurov; Stephen R Baker; Helen R McPherson; Marco M Domingues; Simon D A Connell; Valeri Barsegov; Robert A S Ariëns
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4.  Molecular Paradigms for Biological Mechanosensing.

Authors:  David Gomez; Willmor J Peña Ccoa; Yuvraj Singh; Enrique Rojas; Glen M Hocky
Journal:  J Phys Chem B       Date:  2021-10-28       Impact factor: 3.466

5.  Strength, deformability and toughness of uncrosslinked fibrin fibers from theoretical reconstruction of stress-strain curves.

Authors:  Farkhad Maksudov; Ali Daraei; Anuj Sesha; Kenneth A Marx; Martin Guthold; Valeri Barsegov
Journal:  Acta Biomater       Date:  2021-10-02       Impact factor: 8.947

Review 6.  Engineered Molecular Therapeutics Targeting Fibrin and the Coagulation System: a Biophysical Perspective.

Authors:  Fanny Risser; Ivan Urosev; Joanan López-Morales; Yang Sun; Michael A Nash
Journal:  Biophys Rev       Date:  2022-04-06

Review 7.  Application of optical tweezers in cardiovascular research: More than just a measuring tool.

Authors:  Yi Yang; Zhenhai Fu; Wei Zhu; Huizhu Hu; Jian'an Wang
Journal:  Front Bioeng Biotechnol       Date:  2022-09-06
  7 in total

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