Literature DB >> 30055432

Simplification of complex DNA profiles using front end cell separation and probabilistic modeling.

Nancy A Stokes1, Cristina E Stanciu1, Emily R Brocato1, Christopher J Ehrhardt2, Susan A Greenspoon3.   

Abstract

Forensic samples comprised of cell populations from multiple contributors often yield DNA profiles that can be extremely challenging to interpret. This frequently results in decreased statistical strength of an individual's association to the mixture and the loss of probative data. The purpose of this study was to test a front-end cell separation workflow on complex mixtures containing as many as five contributors. Our approach involved selectively labelling certain cell populations in dried whole blood mixture samples with fluorescently labeled antibody probe targeting the HLA-A*02 allele, separating the mixture using Fluorescence Activated Cell Sorting (FACS) into two fractions that are enriched in A*02 positive and A*02 negative cells, and then generating DNA profiles for each fraction. We then tested whether antibody labelling and cell sorting effectively reduced the complexity of the original cell mixture by analyzing STR profiles quantitatively using the probabilistic modeling software, TrueAllele® Casework. Results showed that antibody labelling and FACS separation of target populations yielded simplified STR profiles that could be more easily interpreted using conventional procedures. Additionally, TrueAllele® analysis of STR profiles from sorted cell fractions increased statistical strength for the association of most of the original contributors interpreted from the original mixtures.
Copyright © 2018 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Cell separation; DNA mixtures; Flow cytometry; Probabilistic modeling; TrueAllele

Mesh:

Substances:

Year:  2018        PMID: 30055432      PMCID: PMC6120788          DOI: 10.1016/j.fsigen.2018.07.004

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


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4.  Full screening and accurate subtyping of HLA-A*02 alleles through group-specific amplification and mono-allelic sequencing.

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5.  FACS separation of non-compromised forensically relevant biological mixtures.

Authors:  Timothy J Verdon; R John Mitchell; Weisan Chen; Kun Xiao; Roland A H van Oorschot
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6.  DNA mixture genotyping by probabilistic computer interpretation of binomially-sampled laser captured cell populations: combining quantitative data for greater identification information.

Authors:  Jack Ballantyne; Erin K Hanson; Mark W Perlin
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7.  Developmental validation of STRmix™, expert software for the interpretation of forensic DNA profiles.

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Journal:  Forensic Sci Int Genet       Date:  2016-05-12       Impact factor: 4.882

8.  Validating TrueAllele® DNA mixture interpretation.

Authors:  Mark W Perlin; Matthew M Legler; Cara E Spencer; Jessica L Smith; William P Allan; Jamie L Belrose; Barry W Duceman
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9.  Separation of uncompromised whole blood mixtures for single source STR profiling using fluorescently-labeled human leukocyte antigen (HLA) probes and fluorescence activated cell sorting (FACS).

Authors:  Lee Dean; Ye Jin Kwon; M Katherine Philpott; Cristina E Stanciu; Sarah J Seashols-Williams; Tracey Dawson Cruz; Jamie Sturgill; Christopher J Ehrhardt
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10.  Analysis of cellular autofluorescence in touch samples by flow cytometry: implications for front end separation of trace mixture evidence.

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3.  Cell Subsampling Recovers Probative DNA Profile Information from Unresolvable/Undetectable Minor Donors in Mixtures.

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4.  Pushing the Boundaries: Forensic DNA Phenotyping Challenged by Single-Cell Sequencing.

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