| Literature DB >> 30049288 |
Nisreen Al-Moghrabi1, Maram Al-Showimi2, Nujoud Al-Yousef3, Bushra Al-Shahrani2, Bedri Karakas3, Lamyaa Alghofaili4, Hannah Almubarak3, Safia Madkhali5, Hind Al Humaidan6.
Abstract
BACKGROUND: Constitutive methylation of tumor suppressor genes are associated with increased cancer risk. However, to date, the question of epimutational transmission of these genes remains unresolved. Here, we studied the potential transmission of BRCA1 and MGMT promoter methylations in mother-newborn pairs.Entities:
Keywords: BRCA1; Blood; Breast cancer; MGMT; Methylation; Ovarian cancer; Transmission
Mesh:
Substances:
Year: 2018 PMID: 30049288 PMCID: PMC6062990 DOI: 10.1186/s13148-018-0529-5
Source DB: PubMed Journal: Clin Epigenetics ISSN: 1868-7075 Impact factor: 6.551
Fig. 1BRCA1and MGMT promoter methylation status in DNA from WBC. MSP analysis of a BRCA1 promoter and b MGMT promoter. Totally methylated bisulfite-modified DNA was used as positive (+ve) control. Only the methylated bands are shown (M). Top panel for mothers, bottom panel for newborns. c, d Summary of BRCA1 and MGMT methylation transmission from mothers to daughters. (+) positive for methylation, (−) negative for methylation
Percentage of WBC DNA BRCA1 and MGMT methylations
| Total population ( | ||
|---|---|---|
| Gene | Group | Promoter methylation (%) |
| | Control women | 25/268 (9.3) |
| Delivering women | 20/295 (6.8) | |
| Newborns | 30/302 (9.9) | |
| Breast cancer | 5/67 (7.5) | |
| Ovarian cancer | 13/82 (15.8) | |
| | Control women | 35/268 (13.1) |
| Delivering women | 29/295 (9.8) | |
| Newborns | 37/302 (12.3) | |
| Breast cancer | 10/67 (15) | |
| Ovarian cancer | 17/82 (20.7) | |
| Group | Methylation (%) | |
| | Control women | 6/25 (24) |
| Delivering women | 2/20 (10) | |
| Newborns | 3/30 (10) | |
| Breast cancer | 0 | |
| Ovarian cancer | 5/17 (29.4) | |
Fig. 2Methylation plots for BRCA1 promoter measured by bisulfite pyrosequencing assay. Levels and pattern of methylation of CpG sites along the BRCA1 promoter region in WBC from a newborn carriers, b woman carriers, c breast cancer patients, and i ovarian cancer patients. g Methylation plots for mother-newborn pairs. Black lines represent average values for control unmethylated samples, and colored lines represent single individuals. Numbers represent CpG sites relative to transcription start site. d–f Effect of promoter methylation on BRCA1 mRNA expression in WBC from newborn carriers, woman carriers, and breast cancer patients, respectively. Black bars represent fold change in BRCA1 promoter methylation. Gray bars represent fold change in BRCA1 expression. Cr carrier, P patient. h Correlation between BRCA1 mRNA levels in WBC and patient age. R2 correlation coefficient
Clinical characterizations of BRCA1- and MGMT-methylated breast cancer-positive cases
Shaded area specifies patients identified in our previous study (reference [24])
ILC invasive lobular carcinoma, IDC invasive ductal carcinoma, ND no data
Clinical characterizations of BRCA1- and MGMT-methylated ovarian cancer patients
| Patient no. | Age | Type | Grade |
|
|
|---|---|---|---|---|---|
| 2 | 54 | Clear cell carcinoma | Advanced | Meth | Meth |
| 13 | 54 | Serous carcinoma | High | Meth | Meth |
| 36 | 55 | Ovarian serous carcinoma | High | Meth | Meth |
| 50 | 43 | Ovarian serous carcinoma. | High | Meth | Meth |
| 23 | 40 | Serous carcinoma | High | Mut/Meth | Meth |
| 38 | 54 | Serous carcinoma | ND | Mut/Meth | Un Meth |
| 7 | 57 | Papillary serous carcinoma | High | Meth | Un Meth |
| 24 | 53 | Serous adenocarcinoma | 3 | Meth | Un Meth |
| 27 | 47 | Serous carcinoma involving uterus | High | Meth | Un Meth |
| 52 | 67 | ovarian adenocarcinoma | High | Meth | Un Meth |
| 59 | 53 | ovarian serous carcinoma | High | Meth | Un Meth |
| 71 | 38 | Ovarian serous carcinoma | ND | Meth | Un Meth |
| 29 | 47 | Carcinoma of the right ovary | High | Meth | Un Meth |
| 6 | 58 | Papillary serous carcinoma | High | Mut | Meth |
| 14 | 34 | Serous adenocarcinoma | High | Mut | Meth |
| 47 | 65 | Poorly differentiated adenocarcinoma | ND | Mut | Meth |
| 17 | 66 | serous ovarian carcinoma | ND | Mut | Meth |
| 69 | 41 | Ovarian serous carcinoma | ND | Mut | Meth |
| 4 | 38 | Clear cell carcinoma | GII | WT | Meth |
| 9 | 46 | papillary serous cancer | High | WT | Meth |
| 16 | 67 | Serous adenocarcinoma | High | WT | Meth |
| 44 | 88 | Metastatic granulosa cell tumor | ND | WT | Meth |
| 55 | 43 | serous carcinoma | High | WT | Meth |
| 60 | 49 | Granulosa cell tumor | ND | WT | Meth |
| 79 | 44 | Mucinous cyst adenocarcinoma | ND | WT | Meth |
Meth methylated, Mut mutated, WT wild type, ND no data
Bisulfite pyrosequencing and real-time PCR primers
| Primers sequences | No. of CpG sites | Annealing temp | |
|---|---|---|---|
| F1 | GGTATTGGATGTTTTTTTTTATAAGATTAT | 3 | 56 |
| F2 | GAAAGAGTGGGGGATTGGGATT | 4 | 60 |
| F3 | AGGGTAGGTATTTTATGGTAAATTTAGGT | 5 | 60 |
| F4 | AGATTGGGTGGTTAATTTAGAGT | 6 | 58 |
| F5 | GGGGTAGATTGGGTGGTTAA | 5 | 58 |
|
| F 5′–TGTAGGCTCCTTTTGGTTATATCATTC–3′ | 59 °C | |
| β- | F 5′–TCC CTG GAG AAG AGC TAC GA–3′ | 59 °C | |
F forward, R reverse