Literature DB >> 30038359

Analyzing 74,248 Samples Confirms the Association Between CLU rs11136000 Polymorphism and Alzheimer's Disease in Caucasian But Not Chinese population.

Zhijie Han1, Jiaojiao Qu2, Jiehong Zhao3, Xiao Zou4.   

Abstract

Clusterin (CLU) is considered one of the most important roles for pathogenesis of Alzheimer's Disease (AD). The early genome-wide association studies (GWAS) identified the CLU rs11136000 polymorphism is significantly associated with AD in Caucasian. However, the subsequent studies are unable to replicate these findings in different populations. Although two independent meta-analyses show evidence to support significant association in Asian and Caucasian populations by integrating the data from 18 and 25 related GWAS studies, respectively, many of the following 18 studies also reported the inconsistent results. Moreover, there are six missed and a misclassified GWAS studies in the two meta-analyses. Therefore, we suspected that the small-scale and incompletion or heterogeneity of the samples maybe lead to different results of these studies. In this study, large-scale samples from 50 related GWAS studies (28,464 AD cases and 45,784 controls) were selected afresh from seven authoritative sources to reevaluate the effect of rs11136000 polymorphism to AD risk. Similarly, we identified that the minor allele variant of rs11136000 significantly decrease AD risk in Caucasian ethnicity using the allele, dominant and recessive model. Different from the results of the previous studies, however, the results showed a negligible or no association in Asian and Chinese populations. Collectively, our analysis suggests that, for Asian and Chinese populations, the variant of rs11136000 may be irrelevant to AD risk. We believe that these findings can help to improve the understanding of the AD's pathogenesis.

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Mesh:

Year:  2018        PMID: 30038359      PMCID: PMC6056482          DOI: 10.1038/s41598-018-29450-2

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


Introduction

Alzheimer’s Disease (AD) is a commonest kind of neurodegenerative disorders with a complex pathogenesis, and has become one of the leading causes of death in elderly people[1,2]. It is characterized by accumulation and toxic effect of the amyloid β-peptide (Aβ) deposits and neurofibrillary tangles in brain[3]. Previous studies predict that the newly diagnosed AD patients are expected to reach as many as 135 million by 2050 from about 35 million in 2009 around the world if lack of the effective preventive measures[4,5]. Clusterin (CLU) is considered one of the most important roles for pathogenesis of AD by influencing the structure and neurotoxic effects of Aβ deposits[6-8], and some of the variants at CLU can affect its expression level in brain[9,10]. Two early genome-wide association studies (GWAS) identified a single nucleotide polymorphism (SNP) rs11136000 (T < C) significantly associated with AD in the CLU gene by analyzing the large-scale Caucasian populations[11,12]. In particular, Harold et al.[11] and Lambert et al.[12] analyzed 11,756 and 14,490 individuals from USA, UK, Ireland, Germany, France, Italy, Spain, Belgium and Finland, respectively, and both of them found that the minor allele variant of rs11136000 can reduce the risk of AD (95% confidence interval (CI) of odds ratio (OR) less than the value 1). However, the subsequent studies report consistent[13-18] and inconsistent[19-28] results involved in Caucasian, Asian and African populations. For example, by analyzing 268 AD cases and 389 controls from China, Lin et al. find that the participants carrying 2 copies of minor allele in rs11136000 are associated with a decreased risk of AD[17]. The consistent result in North American Caucasian population is also identified by Carrasquillo et al.[18]. While in Canadian and Korean populations, the rs11136000 is found not associated with AD according to the studies of Bettens et al.[24] and Chung et al.[27], respectively. Then, two independent meta-analysis studies re-assess the results of these GWAS studies published before June 20, 2013 (18 studies) and August 31, 2014 (25 studies), respectively, and both of them found this SNP is significantly associated with AD in populations of Asian and Caucasian[29,30]. But among the subsequent 18 GWAS studies published after August 31, 2014, many of them report inconsistent results in the corresponding populations[31-47]. Moreover, by comparing the selected GWAS articles published before June 20, 2013 in the two meta-analysis studies, we find the selection is incomplete for both of them. In particular, Liu et al.[29] miss two GWAS articles about Caucasian populations[16,24], and Du et al.[30] miss a GWAS article about Asian population[27]. In fact, through our further investigation, a total five related GWAS articles published before August 31, 2014 are not collected in the two meta-analysis studies[48-52]. In addition, a GWAS study about American and German populations is misclassified to the Asian ethnicity subgroup in Du et al.’s study[22]. We suspected that the small-scale and incompletion or heterogeneity of the samples maybe lead to different results of these studies. In this study, we selected 50 related GWAS studies with large-scale samples from 40 articles (28,464 cases and 45,784 controls, about 40.3% increase over the total number of the previous two meta-analysis studies[29,30]) by searching the PubMed, ClinicalKey, AlzGene, Google Scholar, CNKI, Wanfang and VIP databases, and reevaluated the association between AD and rs11136000 polymorphism in Caucasian, Asian and Chinese population using the method of meta-analysis as previously described[53-63]. The use of more complete and larger scale samples would make the results more reliable.

Methods and Materials

Selection of literatures and GWAS studies

All of the possible studies were selected by searching the databases of PubMed (http://www.ncbi.nlm.nih.gov/pubmed, ClinicalKey (https://www.clinicalkey.com/), Wanfang (http://www.wanfangdata.com.cn/), CNKI (http://www.cnki.net/) and VIP (http://www.cqvip.com/) using the keywords: “Alzheimer’s disease”, “rs11136000”, “Clusterin” or “CLU”. The CNKI, Wanfang and VIP are very authoritative and reliable Chinese database. And then, we consulted the related studies collected in AlzGene database (http://www.alzgene.org/) which was a publicly available resource providing the information of AD genetic variants from 1,395 GWAS studies (updated April 18, 2011)[64]. In addition, we further queried references of these identified GWAS studies in previous steps and the articles citing them using the Google Scholar (http://scholar.google.com/). After that, the appropriate studies were identified by the following criteria: (1) The study is a GWAS to analysis the association of rs11136000 polymorphism and AD. (2) It is a case-control design study. (3) The study provides both of the numbers of cases and controls. (4) The study provides the information about the ethnicity of each individual. (5) The detailed data for rs11136000 genotypes are available in the study.

Extraction of the related data

We extracted the related data for subsequent analysis from these identified studies: (1) each study’s publication date. (2) The first the author’s name in each of these studies. (3) The numbers of AD patients and controls of each study. (4) The sample’s ethnicity of each study. (5) The detailed genotype data of rs11136000 polymorphism both in AD patients and controls. (6) The types of genotyping platforms. (7) The key results of each study (i.e. the OR value and its 95% CI, as well as the corresponding P value). Moreover, if these results are not provided in the study directly, we would calculate them by the genotype data using the R program (http://www.r-project.org/).

Genetic model choice

The rs11136000 polymorphism contains two types of variants (T and C). T is the minor allele and C is the major allele. We assumed that they are the lower and high risk factor for AD, respectively. Then, the dominant model (TT + TC allele versus CC allele), allele model (T versus C) and recessive model (TT versus TC + CC) were used in this study. According to Table 1, all these studies were meta-analyzed using allele model, while only the studies offering CC, CT and TT genotypes data were analyzed using dominant or recessive model.
Table 1

Main information of the studies included in this meta-analysis.

StudyYearCountry or institutionEthnicityNo. of casesNo. of controlsGenotyping platformKind of genotype
Jia et al.[35]2017ChinaAsian1,2014,889SNaPshotC/T
Shankarappa et al.[34]2017IndiaAsian243164TaqManCC/CT/TT
Huang et al.[37]2016ChinaAsian3956SequenomC/T
Luo et al.[41]2016ChinaAsian109120PCRCC/CT/TT
Rezazadeh et al.[39]2016IranAsian160163PCRCC/CT/TT
Wang et al.[40]2016ChinaAsian748760SNaPshotCC/CT/TT
Jiao et al.[44]2015ChinaAsian229318PCRCC/CT/TT
Xiao et al. (stage 1)[47]2015ChinaAsian232373SequenomC/T
Xiao et al. (stage 2)[47]2015ChinaAsian227378SequenomC/T
Lu et al.[28]2014ChinaAsian493583PCRCC/CT/TT
Chen et al.[25]2012ChinaAsian451338SequenomCC/CT/TT
Chung et al.[27]2012KoreaAsian290544TaqManC/T
Lin et al.[17]2012ChinaAsian268389CC/CT/TT
Ma et al.[23]2012ChinaAsian127143PCRCC/CT/TT
Ohara et al.[26]2012JapanAsian8242,933Invader assayCC/CT/TT
Yu et al.[21]2010ChinaAsian324388MALDI-TOF mass spectrometryCC/CT/TT
Seripa et al.[33]2017ItalyCaucasian520569PCRCC/CT/TT
Alaylioglu et al.[36]2016TurkeyCaucasian183154PCRCC/CT/TT
Montanola et al.[38]2016SpainCaucasian7388SNPlexC/T
Ferrari et al.[43]2015ItalyCaucasian3728PCRC/T
Sen et al.[45]2015TurkeyCaucasian112106TaqManCC/CT/TT
Sleegers et al.[46]2015BelgiumCaucasian1,2951,090PCRCC/CT/TT
Carrasquillo et al.[18]2014USACaucasian542,424TaqManCC/CT/TT
Pedraza et al.[51]2014MCADRCCaucasian4112,145TaqManC/T
Roussotte et al.[52]2014ADNICaucasian173205Illumina 610CC/CT/TT
Mullan et al.[49]2013IrelandCaucasian154142TaqManC/T
Nizamutdinov et al.[50]2013RussiaCaucasian166128ABI prism BigDye TerminatorC/T
Bettens et al.[24]2012BelgiumCaucasian954810PCRC/T
Bettens et al.[24]2012FranceCaucasian1,291608PCRC/T
Bettens et al.[24]2012CanadaCaucasian304239PCRC/T
Kamboh et al.[16]2012USACaucasian1,3441,350TaqmanCC/CT/TT
Carrasquillo et al.[13]2010USACaucasian1,8192,565TaqmanCC/CT/TT
Corneveaux et al.[48]2010NIA, MBBCaucasian1,019591Affymetrix 6.0C/T
Golenkina et al.[20]2010RussiaCaucasian534702PCRCC/CT/TT
Seshadri et al.[14]2010SpainCaucasian1,1401,209Illumina 550,370,300 and Affymetrix 500 KCC/CT/TT
Giedraitis et al.[19]2009SwedenCaucasian79365Illumina GoldenGateCC/CT/TT
Harold et al.[11]2009USACaucasian1,1532,187Illumina 610, 550 and 300CC/CT/TT
Harold et al.[11]2009UK,IrelandCaucasian2,2204,833Illumina 610CC/CT/TT
Harold et al.[11]2009GermanyCaucasian539824Illumina 610 and 550CC/CT/TT
Lambert et al.[12]2009FranceCaucasian2,0395,378Illumina 610CC/CT/TT
Lambert et al.[12]2009ItalyCaucasian1,4801,263Taqman and SequenomCC/CT/TT
Lambert et al.[12]2009SpainCaucasian748810Taqman and SequenomCC/CT/TT
Lambert et al.[12]2009BelgiumCaucasian1,035491Taqman and SequenomCC/CT/TT
Lambert et al.[12]2009FinlandCaucasian596650Taqman and SequenomCC/CT/TT
Pedraza et al.[51]2014MCADRCAfrican44223TaqManC/T
Belcavello et al.[42]2015BrazilAmerican81161PCRCC/CT/TT
Moreno et al.[31]2017ColombiaMixed population (Caucasian, African and American)280357PCRC/T
Santos-Reboucas et al.[32]2017BrazilMixed population (Caucasian, African and mulatto)174175TaqManCC/CT/TT
Ferrari et al.[15]2012UKMixed population (Caucasian and African)342277TaqManC/T
Gu et al.[22]2011IndianaMixed population (Caucasian and American)10698PCRCC/CT/TT
All28,46445,784

“CC/CT/TT” means the study offer the data of genotypes CC, CT and TT both in cases and controls. “C/T” means only the data of genotypes C and T are offered in the study. MCADRC: Mayo Clinic Alzheimer’s Disease Research Center; ADNI: Alzheimer’s Disease Neuroimaging Initiative; NIA: National Institute on Aging; MBB: Miami Brain Bank.

Main information of the studies included in this meta-analysis. “CC/CT/TT” means the study offer the data of genotypes CC, CT and TT both in cases and controls. “C/T” means only the data of genotypes C and T are offered in the study. MCADRC: Mayo Clinic Alzheimer’s Disease Research Center; ADNI: Alzheimer’s Disease Neuroimaging Initiative; NIA: National Institute on Aging; MBB: Miami Brain Bank.

Hardy–Weinberg equilibrium (HWE) test

The HWE test of the rs11136000 polymorphism in AD patient and control groups was performed using a non-continuity correction chi-squared method with the significance level P < 0.01 as previously described[65]. Briefly, for the SNP in each case and control group, the simulated P values were calculated to measure the deviation from HWE based on 10,000 iterations. The R package ‘Genetics’ was used to perform the HWE test (https://cran.r-project.org/web/packages/genetics/index.html).

Heterogeneity test

In this study, the heterogeneity among the kinds of populations was measured by the two parameters, I2 value and Cochran’s Q. I2 value range from 0 to 100%, and it is calculated by Cochran’s Q according to the formula . The Cochran’s Q is based on a chi-squared distribution with k − 1 degrees of freedom, and k means the number of studies. Usually, the extreme, high, moderate and low heterogeneity was considered corresponding to the I 2 value of >75%, 50–75%, 25–50%, and <25%, respectively. In this study, the threshold of significant heterogeneity was set as I2 > 50% and P < 0.01 according to previous studies[53-56].

Meta-analysis in entirety and subgroup

According to the results of heterogeneity test, the random and the fixed effect model were performed when the heterogeneity was significant or not, respectively[66]. We used the R package ‘meta’ to perform the meta-analysis, and determine the significance level of association between rs11136000 and AD through the pooled OR value and its 95% CI, as well as the corresponding P value (http://cran.r-project.org/web/packages/meta/index.html). And then, the original samples were further split into Caucasian, Asian, East Asian and Chinese populations, and the meta-analysis was performed in these subgroups.

Publication bias analysis and sensitivity analysis

We first evaluated the publication bias of the studies used in dominant, allele and recessive model, respectively, by the two common checking methods, the Begg’s test[67] and Egger’s test[68]. The threshold of significant publication bias was set as P < 0.05. Then, we used the asymmetry of the funnel plots to describ the results of the publication bias analysis. Finally, for sensitivity analyses, we excluded each study in turn from the whole sample to measure the influence of each study.

Data availability

All the datasets used in this are available from the corresponding author.

Results

Study acquisition and data extraction

By a keyword search in the publicly available databases and a screening according to the criteria, a total 46 studies from 36 articles were identified which mainly involved in Caucasian and Asian populations. Moreover, a study about Sweden population was selected from AlzGene database, and three studies involved in Asian populations were identified by the citation check using Google Scholar. Figure 1 showed the workflow of selection. Then, the related data of these 50 studies were extracted, and the main information was described in Table 1 (the detailed genotype data, the OR value and its 95% CI, as well as the corresponding P value were shown in Supplementary Table S1).
Figure 1

Flow chart of selecting studies for analyzing the association between rs11136000 polymorphism and AD.

Flow chart of selecting studies for analyzing the association between rs11136000 polymorphism and AD.

Hardy–Weinberg equilibrium test

We calculated the P value of HWE to assess the genotype distribution of rs11136000 polymorphism in AD patients and controls separately. Using a significance level of P < 0.01, we observed that a few of the samples deviated from HWE, including the case samples from the study of Yu et al. (P = 9.0 × 10−3) and Gu et al. (P = 2.0 × 10−4), and the control samples from the study of Rezazadeh et al. (P = 1.0 × 10−4), Gu et al. (P = 1.0 × 10−4) and Lin et al. (P = 9.0 × 10−3). More detailed information about the results of the HWE test was described in Supplementary Table S2.

Heterogeneity Test and Meta-analysis

After the test, we found that there is no the significant genetic heterogeneity of rs11136000 polymorphism among all of the 50 selected studies using the dominant (I2 = 0% and P = 0.60), allele (I2 = 10% and P = 0.28) and recessive model (I2 = 33% and P = 0.04). Therefore, the meta-analysis with fixed effect model was performed to assess the association between rs11136000 and the risk of AD, and we found significant results in all the three models. In particular, the significant association between the minor allele (T) of rs11136000 and a decreased risk of AD was identified in the allele (OR = 0.875, 95% CI = 0.854–0.896, P < 0.0001) (Fig. 2), dominant (OR = 0.848, 95% CI = 0.817–0.879, P < 0.0001) and recessive model (OR = 0.822, 95% CI = 0.779–0.868, P < 0.0001) (Supplementary Figs S1 and S2).
Figure 2

Forest plot for the meta-analysis of rs11136000 polymorphism using allele model. All the 50 selected studies are used to meta-analysis of the allele contrast (T versus C) by the fixed effect model (Mantel-Haenszel) because the genetic heterogeneity is not significant. The minor allele (T) of rs11136000 was significantly associated with a decreased risk of AD.

Forest plot for the meta-analysis of rs11136000 polymorphism using allele model. All the 50 selected studies are used to meta-analysis of the allele contrast (T versus C) by the fixed effect model (Mantel-Haenszel) because the genetic heterogeneity is not significant. The minor allele (T) of rs11136000 was significantly associated with a decreased risk of AD.

Subgroup Analysis

We further performed the meta-analysis in the subgroups to assess the association between rs11136000 and the risk of AD in different ethnicities. Among all the 50 selected studies, the great majority of them involved in Caucasian or Asian ethnicity, except two studies about African and American population, respectively, and four mixed population studies (Table 1). Therefore, we first divided these studies into Caucasian or Asian ethnicity subgroups. We found a significant association between the minor allele (T) of rs11136000 and a decreased risk of AD in Caucasian ethnicity using the allele (OR = 0.864, 95% CI = 0.842–0.888, P < 0.0001), dominant (OR = 0.829, 95% CI = 0.796–0.864, P < 0.0001) and recessive model (OR = 0.819, 95% CI = 0.774–0.867, P < 0.0001) (Supplementary Figs S3–S5). For the Asian ethnicity, however, only a weak association was observed in allele model (OR = 0.921, 95% CI = 0.871–0.973, P = 0.0034) (Fig. 3a), but not the dominant (OR = 0.922, 95% CI = 0.846–1.005, P = 0.0649) (Fig. 3b) and recessive model (OR = 0.747, 95% CI = 0.511–1.092, P = 0.1326) (Fig. 3c).
Figure 3

Forest plot for the meta-analysis of rs11136000 polymorphism in Asian population. Only a weak association between rs11136000 polymorphism and AD is observed in the allele model (a), but not the dominant (b) and recessive model (c).

Forest plot for the meta-analysis of rs11136000 polymorphism in Asian population. Only a weak association between rs11136000 polymorphism and AD is observed in the allele model (a), but not the dominant (b) and recessive model (c). The Asian population in this study was composed of the Indian, Iranian, Korean and Japanese individuals separately from a GWAS study, and the Chinese individuals from 12 GWAS studies. Therefore, we then assessed the association between this SNP and risk of AD in East Asian and Chinese populations. Interestingly, the results of meta-analysis in East Asian population were similar to these in Asian population (Supplementary Figs S6–S8). However, the association was not significant in Chinese population using the allele (OR = 0.939, 95% CI = 0.878–1.004, P = 0.0654) (Fig. 4a), dominant (OR = 0.988, 95% CI = 0.887–1.101, P = 0.8270) (Fig. 4b) and recessive model (OR = 0.615, 95% CI = 0.355–1.068, P = 0.0841) (Fig. 4c), which was different from the findings in the previous studies[29,30].
Figure 4

Forest plot for the meta-analysis of rs11136000 polymorphism in Chinese population. The association between rs11136000 polymorphism and AD was not significant in the allele (a), dominant (b) and recessive model (c).

Forest plot for the meta-analysis of rs11136000 polymorphism in Chinese population. The association between rs11136000 polymorphism and AD was not significant in the allele (a), dominant (b) and recessive model (c). Moreover, given that a few samples from four GWAS studies (three Asian populations and a mixed population) deviated from HWE, we further tested whether they affected the accuracy of the results by removing these studies from whole sample, Asian, East Asian and Chinese subgroups, respectively. The results were consistent with what we had been observed previously in whole sample and the subgroups using allele, dominant and recessive model. Table 2 showed the detailed information of the results.
Table 2

The results of meta-analysis after removing the studies deviated from HWE.

EthnicityStudiesMeta-analysisHeterogeneity testAssociation
OR95% ICP valueI2P value
the allele model
integrated populationAll0.875[0.8543; 0.8955]<0.00019.9%0.2764significant
integrated populationIn HWE0.875[0.8524; 0.8960]<0.000111.4%0.2560significant
AsianAll0.927[0.8777; 0.9786]0.003434.8%0.0734significant
AsianIn HWE0.928[0.8752; 0.9845]0.013139.4%0.0706significant
East AsianAll0.918[0.8673; 0.9725]0.003641.8%0.0501significant
East AsianIn HWE0.932[0.8781; 0.9898]0.021842.8%0.0573significant
ChinaAll0.939[0.8782; 1.0040]0.065447.1%0.0355not significant
ChinaIn HWE0.962[0.8959; 1.0332]0.288446.2%0.0534not significant
the dominant model
integrated populationAll0.848[0.8171; 0.8794]<0.00010.0%0.5996significant
integrated populationIn HWE0.848[0.8169; 0.8803]<0.00010.6%0.4558significant
AsianAll0.922[0.8464; 1.0050]0.064916.0%0.2917not significant
AsianIn HWE0.940[0.8558; 1.0326]0.196928.1%0.2037not significant
East AsianAll0.934[0.8545; 1.0205]0.130419.2%0.2717not significant
East AsianIn HWE0.946[0.8588; 1.0418]0.259136.9%0.1494not significant
ChinaAll0.988[0.8868; 1.1008]0.82700.0%0.4601not significant
ChinaIn HWE1.026[0.9072; 1.1612]0.67942.4%0.4013not significant
the recessive model
integrated populationAll0.822[0.7790; 0.8676]<0.000132.6%0.0387significant
integrated populationIn HWE0.824[0.7799; 0.8695]<0.00010.0%0.5382significant
AsianAll0.747[0.5112; 1.0924]0.132670.5%0.0002not significant
AsianIn HWE0.861[0.7089; 1.0454]0.130547.7%0.0631not significant
East AsianAll0.675[0.4441; 1.0254]0.065468.1%0.0015not significant
East AsianIn HWE0.883[0.7221; 1.0795]0.224651.9%0.0524not significant
ChinaAll0.615[0.3546; 1.0677]0.084171.8%0.0008not significant
ChinaIn HWE0.892[0.6767; 1.1750]0.415459.8%0.0291not significant
The results of meta-analysis after removing the studies deviated from HWE. As the funnel plots show (Fig. 5), we did not identify the significant publication bias in the three genetic models. In particular, the P value of Begg’s and Egger’s test is 0.80 and 0.24, respectively, for dominant model. Similarly, the P value is 0.43 (Begg’s test) and 0.21 (Egger’s test) for the allele model, and 0.22 (Begg’s test) and 0.61 (Egger’s test) for the recessive model. Moreover, through the sensitivity analysis, for all the three genetic models, we did not found a significant change of the association level between rs11136000 and AD when excluding any of the studies. Supplementary Tables S3–S5 described the related information in detailed.
Figure 5

Funnel plot for publication bias analysis of rs11136000 polymorphism in AD using allele, dominant and recessive models.

Funnel plot for publication bias analysis of rs11136000 polymorphism in AD using allele, dominant and recessive models.

Discussion

AD was characterized by accumulation and toxic effect of the Aβ deposits in brain[3], and previous studies reported that the CLU could markedly influence the fibrillary Aβ formation and accumulation to mediate its toxicity in vivo, and likely as one of the most important roles for pathogenesis of AD[6,7]. Then, the subsequent GWAS studies found some variants in CLU were differently distributed between AD patients and controls[11-18]. Among these variants, a significant association was found between the minor allele (T) of rs11136000 and a decreased risk of AD by Harold et al.[11], Lambert et al.[12], Carrasquillo et al.[13] and Seshadri et al.[14]. However, these results could not be repeated in other populations by the following studies[19-28]. Although the two independent meta-analyses found a significant association between the minor allele (T) of rs11136000 and a decreased risk of AD in Caucasian and Asian ethnicities by integrating the data from related GWAS studies published before June 20, 2013 (18 studies) and August 31, 2014 (25 studies), respectively[29,30], many of the following studies also reported the inconsistent results[31-47]. Moreover, according to our further investigation, the two meta-analyses missed out a total six related GWAS studies published before August 31, 2014[48-52], and a GWAS study about American and German populations is misclassified to the Asian ethnicity subgroup in Du et al.’s meta-analysis[22]. Therefore, we suspected that the small-scale and incompletion or heterogeneity of the samples maybe lead to different results of these studies. In this study, 50 related GWAS studies (including the 6 missing and 18 novel studies) were selected afresh from seven authoritative sources, and the association level between rs11136000 and risk of AD in Caucasian, Asian and Chinese ethnicity was re-evaluated. We also found a significant association between rs11136000 polymorphism and the decreased risk of AD in Caucasian ethnicity using the dominant (OR = 0.829, 95% CI = 0.796–0.864, P < 0.0001), allele (OR = 0.864, 95% CI = 0.842−0.888, P < 0.0001) and recessive model (OR = 0.819, 95% CI = 0.774−0.867, P < 0.0001). Different from the results of the previous studies, however, rs11136000 polymorphism was found not associated with the risk of AD in Asian ethnicity using the dominant (OR = 0.922, 95% CI = 0.846–1.005, P = 0.0649) and recessive model (OR = 0.747, 95% CI = 0.511−1.092, P = 0.1326), as well as in Chinese population using the dominant (OR = 0.988, 95% CI = 0.887−1.101, P = 0.8270), allele (OR = 0.939, 95% CI = 0.878–1.004, P = 0.0654) and recessive model (OR = 0.615, 95% CI = 0.355−1.068, P = 0.0841). As far as we know, our meta-analysis about the association of the CLU rs11136000 polymorphism with the risk of AD is by far the largest scale study. The results reveal a significant association between them in Caucasian ethnicity but not Chinese ethnicity, which is consistent with the findings of most of the corresponding GWAS studies. In summary, we believe that these findings can help to improve the understanding of the AD’s pathogenesis. Supporting Information
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4.  Diffusible, nonfibrillar ligands derived from Abeta1-42 are potent central nervous system neurotoxins.

Authors:  M P Lambert; A K Barlow; B A Chromy; C Edwards; R Freed; M Liosatos; T E Morgan; I Rozovsky; B Trommer; K L Viola; P Wals; C Zhang; C E Finch; G A Krafft; W L Klein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

5.  DincRNA: a comprehensive web-based bioinformatics toolkit for exploring disease associations and ncRNA function.

Authors:  Liang Cheng; Yang Hu; Jie Sun; Meng Zhou; Qinghua Jiang
Journal:  Bioinformatics       Date:  2018-06-01       Impact factor: 6.937

6.  rs3851179 Polymorphism at 5' to the PICALM Gene is Associated with Alzheimer and Parkinson Diseases in Brazilian Population.

Authors:  Cíntia Barros Santos-Rebouças; Andressa Pereira Gonçalves; Jussara Mendonça Dos Santos; Bianca Barbosa Abdala; Luciana Branco Motta; Jerson Laks; Margarete Borges de Borges; Ana Lúcia Zuma de Rosso; João Santos Pereira; Denise Hack Nicaretta; Márcia Mattos Gonçalves Pimentel
Journal:  Neuromolecular Med       Date:  2017-05-31       Impact factor: 3.843

7.  Alzheimer's Disease Variants with the Genome-Wide Significance are Significantly Enriched in Immune Pathways and Active in Immune Cells.

Authors:  Qinghua Jiang; Shuilin Jin; Yongshuai Jiang; Mingzhi Liao; Rennan Feng; Liangcai Zhang; Guiyou Liu; Junwei Hao
Journal:  Mol Neurobiol       Date:  2016-01-09       Impact factor: 5.590

8.  Analyzing large-scale samples confirms the association between the rs1051730 polymorphism and lung cancer susceptibility.

Authors:  Zhijie Han; Qinghua Jiang; Tianjiao Zhang; Xiaoliang Wu; Rui Ma; Jixuan Wang; Yang Bai; Rongjie Wang; Renjie Tan; Yadong Wang
Journal:  Sci Rep       Date:  2015-10-28       Impact factor: 4.379

9.  Both common variations and rare non-synonymous substitutions and small insertion/deletions in CLU are associated with increased Alzheimer risk.

Authors:  Karolien Bettens; Nathalie Brouwers; Sebastiaan Engelborghs; Jean-Charles Lambert; Ekaterina Rogaeva; Rik Vandenberghe; Nathalie Le Bastard; Florence Pasquier; Steven Vermeulen; Jasper Van Dongen; Maria Mattheijssens; Karin Peeters; Richard Mayeux; Peter St George-Hyslop; Philippe Amouyel; Peter P De Deyn; Kristel Sleegers; Christine Van Broeckhoven
Journal:  Mol Neurodegener       Date:  2012-01-16       Impact factor: 14.195

10.  Risk prediction for sporadic Alzheimer's disease using genetic risk score in the Han Chinese population.

Authors:  Qianyi Xiao; Zhi-Jun Liu; Sha Tao; Yi-Min Sun; Deke Jiang; Hong-Lei Li; Haitao Chen; Xu Liu; Brittany Lapin; Chi-Hsiung Wang; S Lilly Zheng; Jianfeng Xu; Zhi-Ying Wu
Journal:  Oncotarget       Date:  2015-11-10
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  7 in total

Review 1.  Gene-environment interactions in Alzheimer's disease: A potential path to precision medicine.

Authors:  Aseel Eid; Isha Mhatre; Jason R Richardson
Journal:  Pharmacol Ther       Date:  2019-03-12       Impact factor: 12.310

2.  Multi-transcriptomic analysis points to early organelle dysfunction in human astrocytes in Alzheimer's disease.

Authors:  Elena Galea; Laura D Weinstock; Raquel Larramona-Arcas; Alyssa F Pybus; Lydia Giménez-Llort; Carole Escartin; Levi B Wood
Journal:  Neurobiol Dis       Date:  2022-02-08       Impact factor: 7.046

Review 3.  How understudied populations have contributed to our understanding of Alzheimer's disease genetics.

Authors:  Nadia Dehghani; Jose Bras; Rita Guerreiro
Journal:  Brain       Date:  2021-05-07       Impact factor: 13.501

4.  The Links between Cardiovascular Diseases and Alzheimer's Disease.

Authors:  Jerzy Leszek; Elizaveta V Mikhaylenko; Dmitrii M Belousov; Efrosini Koutsouraki; Katarzyna Szczechowiak; Małgorzata Kobusiak-Prokopowicz; Andrzej Mysiak; Breno Satler Diniz; Siva G Somasundaram; Cecil E Kirkland; Gjumrakch Aliev
Journal:  Curr Neuropharmacol       Date:  2021       Impact factor: 7.363

5.  Genetic variant rs11136000 upregulates clusterin expression and reduces Alzheimer's disease risk.

Authors:  Jin Ma; Shizheng Qiu
Journal:  Front Neurosci       Date:  2022-08-10       Impact factor: 5.152

6.  Integrating the Ribonucleic Acid Sequencing Data From Various Studies for Exploring the Multiple Sclerosis-Related Long Noncoding Ribonucleic Acids and Their Functions.

Authors:  Zhijie Han; Jiao Hua; Weiwei Xue; Feng Zhu
Journal:  Front Genet       Date:  2019-11-12       Impact factor: 4.599

Review 7.  Secreted Chaperones in Neurodegeneration.

Authors:  Kriti Chaplot; Timothy S Jarvela; Iris Lindberg
Journal:  Front Aging Neurosci       Date:  2020-08-27       Impact factor: 5.750

  7 in total

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