| Literature DB >> 30038359 |
Zhijie Han1, Jiaojiao Qu2, Jiehong Zhao3, Xiao Zou4.
Abstract
Clusterin (CLU) is considered one of the most important roles for pathogenesis of Alzheimer's Disease (AD). The early genome-wide association studies (GWAS) identified the CLU rs11136000 polymorphism is significantly associated with AD in Caucasian. However, the subsequent studies are unable to replicate these findings in different populations. Although two independent meta-analyses show evidence to support significant association in Asian and Caucasian populations by integrating the data from 18 and 25 related GWAS studies, respectively, many of the following 18 studies also reported the inconsistent results. Moreover, there are six missed and a misclassified GWAS studies in the two meta-analyses. Therefore, we suspected that the small-scale and incompletion or heterogeneity of the samples maybe lead to different results of these studies. In this study, large-scale samples from 50 related GWAS studies (28,464 AD cases and 45,784 controls) were selected afresh from seven authoritative sources to reevaluate the effect of rs11136000 polymorphism to AD risk. Similarly, we identified that the minor allele variant of rs11136000 significantly decrease AD risk in Caucasian ethnicity using the allele, dominant and recessive model. Different from the results of the previous studies, however, the results showed a negligible or no association in Asian and Chinese populations. Collectively, our analysis suggests that, for Asian and Chinese populations, the variant of rs11136000 may be irrelevant to AD risk. We believe that these findings can help to improve the understanding of the AD's pathogenesis.Entities:
Mesh:
Year: 2018 PMID: 30038359 PMCID: PMC6056482 DOI: 10.1038/s41598-018-29450-2
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Main information of the studies included in this meta-analysis.
| Study | Year | Country or institution | Ethnicity | No. of cases | No. of controls | Genotyping platform | Kind of genotype |
|---|---|---|---|---|---|---|---|
| Jia | 2017 | China | Asian | 1,201 | 4,889 | SNaPshot | C/T |
| Shankarappa | 2017 | India | Asian | 243 | 164 | TaqMan | CC/CT/TT |
| Huang | 2016 | China | Asian | 39 | 56 | Sequenom | C/T |
| Luo | 2016 | China | Asian | 109 | 120 | PCR | CC/CT/TT |
| Rezazadeh | 2016 | Iran | Asian | 160 | 163 | PCR | CC/CT/TT |
| Wang | 2016 | China | Asian | 748 | 760 | SNaPshot | CC/CT/TT |
| Jiao | 2015 | China | Asian | 229 | 318 | PCR | CC/CT/TT |
| Xiao | 2015 | China | Asian | 232 | 373 | Sequenom | C/T |
| Xiao | 2015 | China | Asian | 227 | 378 | Sequenom | C/T |
| Lu | 2014 | China | Asian | 493 | 583 | PCR | CC/CT/TT |
| Chen | 2012 | China | Asian | 451 | 338 | Sequenom | CC/CT/TT |
| Chung | 2012 | Korea | Asian | 290 | 544 | TaqMan | C/T |
| Lin | 2012 | China | Asian | 268 | 389 | — | CC/CT/TT |
| Ma | 2012 | China | Asian | 127 | 143 | PCR | CC/CT/TT |
| Ohara | 2012 | Japan | Asian | 824 | 2,933 | Invader assay | CC/CT/TT |
| Yu | 2010 | China | Asian | 324 | 388 | MALDI-TOF mass spectrometry | CC/CT/TT |
| Seripa | 2017 | Italy | Caucasian | 520 | 569 | PCR | CC/CT/TT |
| Alaylioglu | 2016 | Turkey | Caucasian | 183 | 154 | PCR | CC/CT/TT |
| Montanola | 2016 | Spain | Caucasian | 73 | 88 | SNPlex | C/T |
| Ferrari | 2015 | Italy | Caucasian | 37 | 28 | PCR | C/T |
| Sen | 2015 | Turkey | Caucasian | 112 | 106 | TaqMan | CC/CT/TT |
| Sleegers | 2015 | Belgium | Caucasian | 1,295 | 1,090 | PCR | CC/CT/TT |
| Carrasquillo | 2014 | USA | Caucasian | 54 | 2,424 | TaqMan | CC/CT/TT |
| Pedraza | 2014 | MCADRC | Caucasian | 411 | 2,145 | TaqMan | C/T |
| Roussotte | 2014 | ADNI | Caucasian | 173 | 205 | Illumina 610 | CC/CT/TT |
| Mullan | 2013 | Ireland | Caucasian | 154 | 142 | TaqMan | C/T |
| Nizamutdinov | 2013 | Russia | Caucasian | 166 | 128 | ABI prism BigDye Terminator | C/T |
| Bettens | 2012 | Belgium | Caucasian | 954 | 810 | PCR | C/T |
| Bettens | 2012 | France | Caucasian | 1,291 | 608 | PCR | C/T |
| Bettens | 2012 | Canada | Caucasian | 304 | 239 | PCR | C/T |
| Kamboh | 2012 | USA | Caucasian | 1,344 | 1,350 | Taqman | CC/CT/TT |
| Carrasquillo | 2010 | USA | Caucasian | 1,819 | 2,565 | Taqman | CC/CT/TT |
| Corneveaux | 2010 | NIA, MBB | Caucasian | 1,019 | 591 | Affymetrix 6.0 | C/T |
| Golenkina | 2010 | Russia | Caucasian | 534 | 702 | PCR | CC/CT/TT |
| Seshadri | 2010 | Spain | Caucasian | 1,140 | 1,209 | Illumina 550,370,300 and Affymetrix 500 K | CC/CT/TT |
| Giedraitis | 2009 | Sweden | Caucasian | 79 | 365 | Illumina GoldenGate | CC/CT/TT |
| Harold | 2009 | USA | Caucasian | 1,153 | 2,187 | Illumina 610, 550 and 300 | CC/CT/TT |
| Harold | 2009 | UK,Ireland | Caucasian | 2,220 | 4,833 | Illumina 610 | CC/CT/TT |
| Harold | 2009 | Germany | Caucasian | 539 | 824 | Illumina 610 and 550 | CC/CT/TT |
| Lambert | 2009 | France | Caucasian | 2,039 | 5,378 | Illumina 610 | CC/CT/TT |
| Lambert | 2009 | Italy | Caucasian | 1,480 | 1,263 | Taqman and Sequenom | CC/CT/TT |
| Lambert | 2009 | Spain | Caucasian | 748 | 810 | Taqman and Sequenom | CC/CT/TT |
| Lambert | 2009 | Belgium | Caucasian | 1,035 | 491 | Taqman and Sequenom | CC/CT/TT |
| Lambert | 2009 | Finland | Caucasian | 596 | 650 | Taqman and Sequenom | CC/CT/TT |
| Pedraza | 2014 | MCADRC | African | 44 | 223 | TaqMan | C/T |
| Belcavello | 2015 | Brazil | American | 81 | 161 | PCR | CC/CT/TT |
| Moreno | 2017 | Colombia | Mixed population (Caucasian, African and American) | 280 | 357 | PCR | C/T |
| Santos-Reboucas | 2017 | Brazil | Mixed population (Caucasian, African and mulatto) | 174 | 175 | TaqMan | CC/CT/TT |
| Ferrari | 2012 | UK | Mixed population (Caucasian and African) | 342 | 277 | TaqMan | C/T |
| Gu | 2011 | Indiana | Mixed population (Caucasian and American) | 106 | 98 | PCR | CC/CT/TT |
| All | 28,464 | 45,784 |
“CC/CT/TT” means the study offer the data of genotypes CC, CT and TT both in cases and controls. “C/T” means only the data of genotypes C and T are offered in the study. MCADRC: Mayo Clinic Alzheimer’s Disease Research Center; ADNI: Alzheimer’s Disease Neuroimaging Initiative; NIA: National Institute on Aging; MBB: Miami Brain Bank.
Figure 1Flow chart of selecting studies for analyzing the association between rs11136000 polymorphism and AD.
Figure 2Forest plot for the meta-analysis of rs11136000 polymorphism using allele model. All the 50 selected studies are used to meta-analysis of the allele contrast (T versus C) by the fixed effect model (Mantel-Haenszel) because the genetic heterogeneity is not significant. The minor allele (T) of rs11136000 was significantly associated with a decreased risk of AD.
Figure 3Forest plot for the meta-analysis of rs11136000 polymorphism in Asian population. Only a weak association between rs11136000 polymorphism and AD is observed in the allele model (a), but not the dominant (b) and recessive model (c).
Figure 4Forest plot for the meta-analysis of rs11136000 polymorphism in Chinese population. The association between rs11136000 polymorphism and AD was not significant in the allele (a), dominant (b) and recessive model (c).
The results of meta-analysis after removing the studies deviated from HWE.
| Ethnicity | Studies | Meta-analysis | Heterogeneity test | Association | |||
|---|---|---|---|---|---|---|---|
| OR | 95% IC | P value | I2 | P value | |||
|
| |||||||
| integrated population | All | 0.875 | [0.8543; 0.8955] | <0.0001 | 9.9% | 0.2764 | significant |
| integrated population | In HWE | 0.875 | [0.8524; 0.8960] | <0.0001 | 11.4% | 0.2560 | significant |
| Asian | All | 0.927 | [0.8777; 0.9786] | 0.0034 | 34.8% | 0.0734 | significant |
| Asian | In HWE | 0.928 | [0.8752; 0.9845] | 0.0131 | 39.4% | 0.0706 | significant |
| East Asian | All | 0.918 | [0.8673; 0.9725] | 0.0036 | 41.8% | 0.0501 | significant |
| East Asian | In HWE | 0.932 | [0.8781; 0.9898] | 0.0218 | 42.8% | 0.0573 | significant |
| China | All | 0.939 | [0.8782; 1.0040] | 0.0654 | 47.1% | 0.0355 | not significant |
| China | In HWE | 0.962 | [0.8959; 1.0332] | 0.2884 | 46.2% | 0.0534 | not significant |
|
| |||||||
| integrated population | All | 0.848 | [0.8171; 0.8794] | <0.0001 | 0.0% | 0.5996 | significant |
| integrated population | In HWE | 0.848 | [0.8169; 0.8803] | <0.0001 | 0.6% | 0.4558 | significant |
| Asian | All | 0.922 | [0.8464; 1.0050] | 0.0649 | 16.0% | 0.2917 | not significant |
| Asian | In HWE | 0.940 | [0.8558; 1.0326] | 0.1969 | 28.1% | 0.2037 | not significant |
| East Asian | All | 0.934 | [0.8545; 1.0205] | 0.1304 | 19.2% | 0.2717 | not significant |
| East Asian | In HWE | 0.946 | [0.8588; 1.0418] | 0.2591 | 36.9% | 0.1494 | not significant |
| China | All | 0.988 | [0.8868; 1.1008] | 0.8270 | 0.0% | 0.4601 | not significant |
| China | In HWE | 1.026 | [0.9072; 1.1612] | 0.6794 | 2.4% | 0.4013 | not significant |
|
| |||||||
| integrated population | All | 0.822 | [0.7790; 0.8676] | <0.0001 | 32.6% | 0.0387 | significant |
| integrated population | In HWE | 0.824 | [0.7799; 0.8695] | <0.0001 | 0.0% | 0.5382 | significant |
| Asian | All | 0.747 | [0.5112; 1.0924] | 0.1326 | 70.5% | 0.0002 | not significant |
| Asian | In HWE | 0.861 | [0.7089; 1.0454] | 0.1305 | 47.7% | 0.0631 | not significant |
| East Asian | All | 0.675 | [0.4441; 1.0254] | 0.0654 | 68.1% | 0.0015 | not significant |
| East Asian | In HWE | 0.883 | [0.7221; 1.0795] | 0.2246 | 51.9% | 0.0524 | not significant |
| China | All | 0.615 | [0.3546; 1.0677] | 0.0841 | 71.8% | 0.0008 | not significant |
| China | In HWE | 0.892 | [0.6767; 1.1750] | 0.4154 | 59.8% | 0.0291 | not significant |
Figure 5Funnel plot for publication bias analysis of rs11136000 polymorphism in AD using allele, dominant and recessive models.