Literature DB >> 33889936

How understudied populations have contributed to our understanding of Alzheimer's disease genetics.

Nadia Dehghani1, Jose Bras1,2, Rita Guerreiro1,2.   

Abstract

The majority of genome-wide association studies have been conducted using samples with a broadly European genetic background. As a field, we acknowledge this limitation and the need to increase the diversity of populations studied. A major challenge when designing and conducting such studies is to assimilate large samples sizes so that we attain enough statistical power to detect variants associated with disease, particularly when trying to identify variants with low and rare minor allele frequencies. In this review, we aimed to illustrate the benefits to genetic characterization of Alzheimer's disease, in researching currently understudied populations. This is important for both fair representation of world populations and the translatability of findings. To that end, we conducted a literature search to understand the contributions of studies, on different populations, to Alzheimer's disease genetics. Using both PubMed and Alzforum Mutation Database, we systematically quantified the number of studies reporting variants in known disease-causing genes, in a worldwide manner, and discuss the contributions of research in understudied populations to the identification of novel genetic factors in this disease. Additionally, we compared the effects of genome-wide significant single nucleotide polymorphisms across populations by focusing on loci that show different association profiles between populations (a key example being APOE). Reports of variants in APP, PSEN1 and PSEN2 can initially determine whether patients from a country have been studied for Alzheimer's disease genetics. Most genome-wide significant associations in non-Hispanic white genome-wide association studies do not reach genome-wide significance in such studies of other populations, with some suggesting an opposite effect direction; this is likely due to much smaller sample sizes attained. There are, however, genome-wide significant associations first identified in understudied populations which have yet to be replicated. Familial studies in understudied populations have identified rare, high effect variants, which have been replicated in other populations. This work functions to both highlight how understudied populations have furthered our understanding of Alzheimer's disease genetics, and to help us gauge our progress in understanding the genetic architecture of this disease in all populations.
© The Author(s) (2021). Published by Oxford University Press on behalf of the Guarantors of Brain. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  Alzheimer’s; diversity; genetics; understudied populations

Mesh:

Year:  2021        PMID: 33889936      PMCID: PMC8105043          DOI: 10.1093/brain/awab028

Source DB:  PubMed          Journal:  Brain        ISSN: 0006-8950            Impact factor:   13.501


  111 in total

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2.  A genome-wide association study of late-onset Alzheimer's disease in a Japanese population.

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Journal:  Psychiatr Genet       Date:  2015-08       Impact factor: 2.458

Review 3.  Genetics of dementia: update and guidelines for the clinician.

Authors:  Petra E Cohn-Hokke; Mariet W Elting; Yolande A L Pijnenburg; John C van Swieten
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2012-07-19       Impact factor: 3.568

4.  TREM2 R47H variant as a risk factor for early-onset Alzheimer's disease.

Authors:  Cyril Pottier; David Wallon; Stephane Rousseau; Anne Rovelet-Lecrux; Anne-Claire Richard; Adeline Rollin-Sillaire; Thierry Frebourg; Dominique Campion; Didier Hannequin
Journal:  J Alzheimers Dis       Date:  2013       Impact factor: 4.472

5.  The structure of the presenilin 1 (S182) gene and identification of six novel mutations in early onset AD families.

Authors: 
Journal:  Nat Genet       Date:  1995-10       Impact factor: 38.330

6.  Genome-wide haplotype association study identify TNFRSF1A, CASP7, LRP1B, CDH1 and TG genes associated with Alzheimer's disease in Caribbean Hispanic individuals.

Authors:  Zhenwei Shang; Hongchao Lv; Mingming Zhang; Lian Duan; Situo Wang; Jin Li; Guiyou Liu; Zhang Ruijie; Yongshuai Jiang
Journal:  Oncotarget       Date:  2015-12-15

7.  Association of Rare Coding Mutations With Alzheimer Disease and Other Dementias Among Adults of European Ancestry.

Authors:  Devanshi Patel; Jesse Mez; Badri N Vardarajan; Lyndsay Staley; Jaeyoon Chung; Xiaoling Zhang; John J Farrell; Michael J Rynkiewicz; Lisa A Cannon-Albright; Craig C Teerlink; Jeffery Stevens; Christopher Corcoran; Josue D Gonzalez Murcia; Oscar L Lopez; Richard Mayeux; Jonathan L Haines; Margaret A Pericak-Vance; Gerard Schellenberg; John S K Kauwe; Kathryn L Lunetta; Lindsay A Farrer
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8.  Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.

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Journal:  Nat Genet       Date:  2013-10-27       Impact factor: 38.330

9.  Characterization of Greater Middle Eastern genetic variation for enhanced disease gene discovery.

Authors:  Eric M Scott; Anason Halees; Yuval Itan; Emily G Spencer; Yupeng He; Mostafa Abdellateef Azab; Stacey B Gabriel; Aziz Belkadi; Bertrand Boisson; Laurent Abel; Andrew G Clark; Fowzan S Alkuraya; Jean-Laurent Casanova; Joseph G Gleeson
Journal:  Nat Genet       Date:  2016-07-18       Impact factor: 38.330

10.  APOE*E2 allele delays age of onset in PSEN1 E280A Alzheimer's disease.

Authors:  J I Vélez; F Lopera; D Sepulveda-Falla; H R Patel; A S Johar; A Chuah; C Tobón; D Rivera; A Villegas; Y Cai; K Peng; R Arkell; F X Castellanos; S J Andrews; M F Silva Lara; P K Creagh; S Easteal; J de Leon; M L Wong; J Licinio; C A Mastronardi; M Arcos-Burgos
Journal:  Mol Psychiatry       Date:  2015-12-01       Impact factor: 15.992

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  4 in total

1.  Genome-wide association of polygenic risk extremes for Alzheimer's disease in the UK Biobank.

Authors:  Catarina Gouveia; Elizabeth Gibbons; Nadia Dehghani; James Eapen; Rita Guerreiro; Jose Bras
Journal:  Sci Rep       Date:  2022-05-19       Impact factor: 4.996

2.  Comprehensive short and long read sequencing analysis for the Gaucher and Parkinson's disease-associated GBA gene.

Authors:  Marco Toffoli; Xiao Chen; Michael A Eberle; Christos Proukakis; Fritz J Sedlazeck; Chiao-Yin Lee; Stephen Mullin; Abigail Higgins; Sofia Koletsi; Monica Emili Garcia-Segura; Esther Sammler; Sonja W Scholz; Anthony H V Schapira
Journal:  Commun Biol       Date:  2022-07-06

3.  Validation of the Norma Latina Neuropsychological Assessment Battery in Patients with Alzheimer's Disease in Mexico.

Authors:  Silvia Núñez-Fernández; Diego Rivera; Eva María Arroyo-Anlló; Xóchitl Angélica Ortiz Jiménez; Borja Camino-Pontes; Ricardo Salinas Martínez; Juan Carlos Arango-Lasprilla
Journal:  Int J Environ Res Public Health       Date:  2022-09-08       Impact factor: 4.614

4.  A comprehensive analysis of copy number variation in a Turkish dementia cohort.

Authors:  Nadia Dehghani; Gamze Guven; Celia Kun-Rodrigues; Catarina Gouveia; Kalina Foster; Hasmet Hanagasi; Ebba Lohmann; Bedia Samanci; Hakan Gurvit; Basar Bilgic; Jose Bras; Rita Guerreiro
Journal:  Hum Genomics       Date:  2021-07-28       Impact factor: 4.639

  4 in total

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