Literature DB >> 3003676

A computer program package for restriction map analysis and manipulation.

G Zehetner, H Lehrach.   

Abstract

Programs for the calculation, storage and analysis of restriction maps derived from the analysis of partial digestion products from end labelled DNA (1,2,3) and their correlation with digestion - and hybridisation patterns in total digestions and Southern blot experiments are described. These programs allow direct input of gel patterns from partial or complete digestion experiments using a digitizer tablet, calculation of molecular weights and restriction maps, plotting of maps and actual or predicted fragment patterns and automated identification of overlapping cosmids from partial restriction mapping results. Programs are written in PASCAL and have been implemented on a VAX/VMS system, with a HP-7221T plotter and a digitizing tablet.

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Year:  1986        PMID: 3003676      PMCID: PMC339417          DOI: 10.1093/nar/14.1.335

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  6 in total

1.  Measurement of DNA length by gel electrophoresis.

Authors:  E M Southern
Journal:  Anal Biochem       Date:  1979-12       Impact factor: 3.365

2.  A simple method for DNA restriction site mapping.

Authors:  H O Smith; M L Birnstiel
Journal:  Nucleic Acids Res       Date:  1976-09       Impact factor: 16.971

3.  Measurement of DNA length by gel electrophoresis. I. Improved accuracy of mobility measurements using a digital microdensitometer and computer processing.

Authors:  J K Elder; A Amos; E M Southern; G A Shippey
Journal:  Anal Biochem       Date:  1983-01       Impact factor: 3.365

4.  Selective isolation of cosmid clones by homologous recombination in Escherichia coli.

Authors:  A Poustka; H R Rackwitz; A M Frischauf; B Hohn; H Lehrach
Journal:  Proc Natl Acad Sci U S A       Date:  1984-07       Impact factor: 11.205

5.  Measurement of DNA length by gel electrophoresis II: Comparison of methods for relating mobility to fragment length.

Authors:  J K Elder; E M Southern
Journal:  Anal Biochem       Date:  1983-01       Impact factor: 3.365

6.  Rapid restriction mapping of DNA cloned in lambda phage vectors.

Authors:  H R Rackwitz; G Zehetner; A M Frischauf; H Lehrach
Journal:  Gene       Date:  1984-10       Impact factor: 3.688

  6 in total
  8 in total

1.  Some mathematical aspects of mapping DNA cosmids.

Authors:  J L Cornette; C DeLisi
Journal:  Cell Biophys       Date:  1988 Jan-Jun

2.  FRAGMAP--a program for restriction site map comparison.

Authors:  P D Gershon; N J Knowles
Journal:  Nucleic Acids Res       Date:  1988-03-11       Impact factor: 16.971

3.  A yeast artificial chromosome telomere clone spanning a possible location of the Huntington disease gene.

Authors:  G P Bates; M E MacDonald; S Baxendale; Z Sedlacek; S Youngman; D Romano; W L Whaley; B A Allitto; A Poustka; J F Gusella
Journal:  Am J Hum Genet       Date:  1990-04       Impact factor: 11.025

4.  Deletion of the entire cytochrome P450 CYP2D6 gene as a cause of impaired drug metabolism in poor metabolizers of the debrisoquine/sparteine polymorphism.

Authors:  A Gaedigk; M Blum; R Gaedigk; M Eichelbaum; U A Meyer
Journal:  Am J Hum Genet       Date:  1991-05       Impact factor: 11.025

5.  Alignment of Escherichia coli K12 DNA sequences to a genomic restriction map.

Authors:  K E Rudd; W Miller; J Ostell; D A Benson
Journal:  Nucleic Acids Res       Date:  1990-01-25       Impact factor: 16.971

6.  Structure, chromosome location, and expression of the mouse zinc finger gene Krox-20: multiple gene products and coregulation with the proto-oncogene c-fos.

Authors:  P Chavrier; U Janssen-Timmen; M G Mattéi; M Zerial; R Bravo; P Charnay
Journal:  Mol Cell Biol       Date:  1989-02       Impact factor: 4.272

7.  Primary structure of the gene for the murine Ia antigen-associated invariant chains (Ii). An alternatively spliced exon encodes a cysteine-rich domain highly homologous to a repetitive sequence of thyroglobulin.

Authors:  N Koch; W Lauer; J Habicht; B Dobberstein
Journal:  EMBO J       Date:  1987-06       Impact factor: 11.598

8.  Identification of a testis-specific gene from the mouse t-complex next to a CpG-rich island.

Authors:  G A Rappold; L Stubbs; S Labeit; R B Crkvenjakov; H Lehrach
Journal:  EMBO J       Date:  1987-07       Impact factor: 11.598

  8 in total

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