Literature DB >> 30031884

Studying intact bacterial peptidoglycan by proton-detected NMR spectroscopy at 100 kHz MAS frequency.

Catherine Bougault1, Isabel Ayala1, Waldemar Vollmer2, Jean-Pierre Simorre3, Paul Schanda4.   

Abstract

The bacterial cell wall is composed of the peptidoglycan (PG), a large polymer that maintains the integrity of the bacterial cell. Due to its multi-gigadalton size, heterogeneity, and dynamics, atomic-resolution studies are inherently complex. Solid-state NMR is an important technique to gain insight into its structure, dynamics and interactions. Here, we explore the possibilities to study the PG with ultra-fast (100 kHz) magic-angle spinning NMR. We demonstrate that highly resolved spectra can be obtained, and show strategies to obtain site-specific resonance assignments and distance information. We also explore the use of proton-proton correlation experiments, thus opening the way for NMR studies of intact cell walls without the need for isotope labeling.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Cell wall; Homonuclear correlation experiments; NMR resonance assignment; Ultra-fast magic-angle spinning

Mesh:

Substances:

Year:  2018        PMID: 30031884      PMCID: PMC6252081          DOI: 10.1016/j.jsb.2018.07.009

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  55 in total

1.  Dynamics characterization of fully hydrated bacterial cell walls by solid-state NMR: evidence for cooperative binding of metal ions.

Authors:  Thomas Kern; Mathilde Giffard; Sabine Hediger; Ana Amoroso; Cécile Giustini; Nhat Khai Bui; Bernard Joris; Catherine Bougault; Waldemar Vollmer; Jean-Pierre Simorre
Journal:  J Am Chem Soc       Date:  2010-08-11       Impact factor: 15.419

2.  SOFAST-HMQC experiments for recording two-dimensional heteronuclear correlation spectra of proteins within a few seconds.

Authors:  Paul Schanda; Eriks Kupce; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

3.  Site-specific measurement of slow motions in proteins.

Authors:  Józef R Lewandowski; Hans Jürgen Sass; Stephan Grzesiek; Martin Blackledge; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2011-10-03       Impact factor: 15.419

4.  Membrane-protein structure determination by solid-state NMR spectroscopy of microcrystals.

Authors:  Shakeel Ahmad Shahid; Benjamin Bardiaux; W Trent Franks; Ludwig Krabben; Michael Habeck; Barth-Jan van Rossum; Dirk Linke
Journal:  Nat Methods       Date:  2012-11-11       Impact factor: 28.547

5.  Characterization of fibril dynamics on three timescales by solid-state NMR.

Authors:  Albert A Smith; Emilie Testori; Riccardo Cadalbert; Beat H Meier; Matthias Ernst
Journal:  J Biomol NMR       Date:  2016-07-16       Impact factor: 2.835

6.  Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

7.  Structure and interactions of plant cell-wall polysaccharides by two- and three-dimensional magic-angle-spinning solid-state NMR.

Authors:  Marilú Pérez García; Yuan Zhang; Jennifer Hayes; Andre Salazar; Olga A Zabotina; Mei Hong
Journal:  Biochemistry       Date:  2011-01-20       Impact factor: 3.162

8.  The CCPN data model for NMR spectroscopy: development of a software pipeline.

Authors:  Wim F Vranken; Wayne Boucher; Tim J Stevens; Rasmus H Fogh; Anne Pajon; Miguel Llinas; Eldon L Ulrich; John L Markley; John Ionides; Ernest D Laue
Journal:  Proteins       Date:  2005-06-01

9.  Limits of Resolution and Sensitivity of Proton Detected MAS Solid-State NMR Experiments at 111 kHz in Deuterated and Protonated Proteins.

Authors:  Kai Xue; Riddhiman Sarkar; Carina Motz; Sam Asami; Diana C Rodriguez Camargo; Venita Decker; Sebastian Wegner; Zdenek Tosner; Bernd Reif
Journal:  Sci Rep       Date:  2017-08-07       Impact factor: 4.379

10.  Atomic model of a cell-wall cross-linking enzyme in complex with an intact bacterial peptidoglycan.

Authors:  Paul Schanda; Sébastien Triboulet; Cédric Laguri; Catherine M Bougault; Isabel Ayala; Morgane Callon; Michel Arthur; Jean-Pierre Simorre
Journal:  J Am Chem Soc       Date:  2014-12-10       Impact factor: 15.419

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  6 in total

1.  Fast MAS 1H-13C correlation NMR for structural investigations of plant cell walls.

Authors:  Pyae Phyo; Mei Hong
Journal:  J Biomol NMR       Date:  2019-09-18       Impact factor: 2.835

Review 2.  Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants.

Authors:  Nader Ghassemi; Alexandre Poulhazan; Fabien Deligey; Frederic Mentink-Vigier; Isabelle Marcotte; Tuo Wang
Journal:  Chem Rev       Date:  2021-12-08       Impact factor: 72.087

Review 3.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
Journal:  Chem Rev       Date:  2022-05-10       Impact factor: 72.087

4.  Including Protons in Solid-State NMR Resonance Assignment and Secondary Structure Analysis: The Example of RNA Polymerase II Subunits Rpo4/7.

Authors:  Anahit Torosyan; Thomas Wiegand; Maarten Schledorn; Daniel Klose; Peter Güntert; Anja Böckmann; Beat H Meier
Journal:  Front Mol Biosci       Date:  2019-10-04

5.  Carbohydrate-aromatic interface and molecular architecture of lignocellulose.

Authors:  Alex Kirui; Wancheng Zhao; Fabien Deligey; Hui Yang; Xue Kang; Frederic Mentink-Vigier; Tuo Wang
Journal:  Nat Commun       Date:  2022-01-27       Impact factor: 17.694

6.  Chemical synthesis of peptidoglycan mimetic-disaccharide-tetrapeptide conjugate and its hydrolysis by bacteriophage T5, RB43 and RB49 L-alanyl-D-glutamate peptidases.

Authors:  Viatcheslav Azev; Alexey Chulin; Maxim Molchanov; Dmitry Prokhorov; Galina Mikoulinskaia; Vladimir N Uversky; Viktor Kutyshenko
Journal:  PeerJ       Date:  2021-05-19       Impact factor: 2.984

  6 in total

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