Literature DB >> 30013184

Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.

Johannes Waage1, Marie Standl2, John A Curtin3, Leon E Jessen1, Jonathan Thorsen1, Chao Tian4, Nathan Schoettler5, Carlos Flores6,7, Abdel Abdellaoui8,9, Tarunveer S Ahluwalia1, Alexessander C Alves10, Andre F S Amaral11, Josep M Antó12,13,14,15, Andreas Arnold16, Amalia Barreto-Luis6, Hansjörg Baurecht17, Catharina E M van Beijsterveldt8, Eugene R Bleecker18, Sílvia Bonàs-Guarch19, Dorret I Boomsma8,20, Susanne Brix21, Supinda Bunyavanich22, Esteban G Burchard23,24, Zhanghua Chen25, Ivan Curjuric26,27, Adnan Custovic28, Herman T den Dekker29,30,31, Shyamali C Dharmage32, Julia Dmitrieva33, Liesbeth Duijts29,31,34, Markus J Ege35, W James Gauderman25, Michel Georges33, Christian Gieger2,36, Frank Gilliland25, Raquel Granell37, Hongsheng Gui38, Torben Hansen39, Joachim Heinrich2,40, John Henderson37, Natalia Hernandez-Pacheco6,41, Patrick Holt42, Medea Imboden26,27, Vincent W V Jaddoe29,30,43, Marjo-Riitta Jarvelin10,44,45,46, Deborah L Jarvis11, Kamilla K Jensen47, Ingileif Jónsdóttir48,49, Michael Kabesch50, Jaakko Kaprio51,52,53, Ashish Kumar26,27,54, Young-Ae Lee55,56, Albert M Levin57, Xingnan Li58, Fabian Lorenzo-Diaz41, Erik Melén54,59, Josep M Mercader19,60,61, Deborah A Meyers18, Rachel Myers5, Dan L Nicolae5, Ellen A Nohr62, Teemu Palviainen52, Lavinia Paternoster37, Craig E Pennell63, Göran Pershagen54,64, Maria Pino-Yanes6,7,41, Nicole M Probst-Hensch26,27, Franz Rüschendorf55, Angela Simpson3, Kari Stefansson48,49, Jordi Sunyer12, Gardar Sveinbjornsson48, Elisabeth Thiering2,65, Philip J Thompson66, Maties Torrent67, David Torrents19,68, Joyce Y Tung4, Carol A Wang63, Stephan Weidinger17, Scott Weiss69, Gonneke Willemsen8, L Keoki Williams38,70, Carole Ober5, David A Hinds4, Manuel A Ferreira71, Hans Bisgaard1, David P Strachan72, Klaus Bønnelykke73.   

Abstract

Allergic rhinitis is the most common clinical presentation of allergy, affecting 400 million people worldwide, with increasing incidence in westernized countries1,2. To elucidate the genetic architecture and understand the underlying disease mechanisms, we carried out a meta-analysis of allergic rhinitis in 59,762 cases and 152,358 controls of European ancestry and identified a total of 41 risk loci for allergic rhinitis, including 20 loci not previously associated with allergic rhinitis, which were confirmed in a replication phase of 60,720 cases and 618,527 controls. Functional annotation implicated genes involved in various immune pathways, and fine mapping of the HLA region suggested amino acid variants important for antigen binding. We further performed genome-wide association study (GWAS) analyses of allergic sensitization against inhalant allergens and nonallergic rhinitis, which suggested shared genetic mechanisms across rhinitis-related traits. Future studies of the identified loci and genes might identify novel targets for treatment and prevention of allergic rhinitis.

Entities:  

Mesh:

Substances:

Year:  2018        PMID: 30013184      PMCID: PMC7068780          DOI: 10.1038/s41588-018-0157-1

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  66 in total

1.  Genome-wide association study identifies multiple loci influencing human serum metabolite levels.

Authors:  Johannes Kettunen; Taru Tukiainen; Antti-Pekka Sarin; Alfredo Ortega-Alonso; Emmi Tikkanen; Leo-Pekka Lyytikäinen; Antti J Kangas; Pasi Soininen; Peter Würtz; Kaisa Silander; Danielle M Dick; Richard J Rose; Markku J Savolainen; Jorma Viikari; Mika Kähönen; Terho Lehtimäki; Kirsi H Pietiläinen; Michael Inouye; Mark I McCarthy; Antti Jula; Johan Eriksson; Olli T Raitakari; Veikko Salomaa; Jaakko Kaprio; Marjo-Riitta Järvelin; Leena Peltonen; Markus Perola; Nelson B Freimer; Mika Ala-Korpela; Aarno Palotie; Samuli Ripatti
Journal:  Nat Genet       Date:  2012-01-29       Impact factor: 38.330

2.  The TAM family receptor tyrosine kinase TYRO3 is a negative regulator of type 2 immunity.

Authors:  Pamela Y Chan; Eugenio A Carrera Silva; Dimitri De Kouchkovsky; Leonel D Joannas; Liming Hao; Donglei Hu; Scott Huntsman; Celeste Eng; Paula Licona-Limón; Jason S Weinstein; De'Broski R Herbert; Joseph E Craft; Richard A Flavell; Silvia Repetto; Jorge Correale; Esteban G Burchard; Dara G Torgerson; Sourav Ghosh; Carla V Rothlin
Journal:  Science       Date:  2016-04-01       Impact factor: 47.728

3.  Quality control and conduct of genome-wide association meta-analyses.

Authors:  Thomas W Winkler; Felix R Day; Damien C Croteau-Chonka; Andrew R Wood; Adam E Locke; Reedik Mägi; Teresa Ferreira; Tove Fall; Mariaelisa Graff; Anne E Justice; Jian'an Luan; Stefan Gustafsson; Joshua C Randall; Sailaja Vedantam; Tsegaselassie Workalemahu; Tuomas O Kilpeläinen; André Scherag; Tonu Esko; Zoltán Kutalik; Iris M Heid; Ruth J F Loos
Journal:  Nat Protoc       Date:  2014-04-24       Impact factor: 13.491

4.  Genetics of gene expression in primary immune cells identifies cell type-specific master regulators and roles of HLA alleles.

Authors:  Benjamin P Fairfax; Seiko Makino; Jayachandran Radhakrishnan; Katharine Plant; Stephen Leslie; Alexander Dilthey; Peter Ellis; Cordelia Langford; Fredrik O Vannberg; Julian C Knight
Journal:  Nat Genet       Date:  2012-03-25       Impact factor: 38.330

5.  Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.

Authors:  Manuel A Ferreira; Judith M Vonk; Hansjörg Baurecht; Ingo Marenholz; Chao Tian; Joshua D Hoffman; Quinta Helmer; Annika Tillander; Vilhelmina Ullemar; Jenny van Dongen; Yi Lu; Franz Rüschendorf; Jorge Esparza-Gordillo; Chris W Medway; Edward Mountjoy; Kimberley Burrows; Oliver Hummel; Sarah Grosche; Ben M Brumpton; John S Witte; Jouke-Jan Hottenga; Gonneke Willemsen; Jie Zheng; Elke Rodríguez; Melanie Hotze; Andre Franke; Joana A Revez; Jonathan Beesley; Melanie C Matheson; Shyamali C Dharmage; Lisa M Bain; Lars G Fritsche; Maiken E Gabrielsen; Brunilda Balliu; Jonas B Nielsen; Wei Zhou; Kristian Hveem; Arnulf Langhammer; Oddgeir L Holmen; Mari Løset; Gonçalo R Abecasis; Cristen J Willer; Andreas Arnold; Georg Homuth; Carsten O Schmidt; Philip J Thompson; Nicholas G Martin; David L Duffy; Natalija Novak; Holger Schulz; Stefan Karrasch; Christian Gieger; Konstantin Strauch; Ronald B Melles; David A Hinds; Norbert Hübner; Stephan Weidinger; Patrik K E Magnusson; Rick Jansen; Eric Jorgenson; Young-Ae Lee; Dorret I Boomsma; Catarina Almqvist; Robert Karlsson; Gerard H Koppelman; Lavinia Paternoster
Journal:  Nat Genet       Date:  2017-10-30       Impact factor: 38.330

6.  Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.

Authors:  Klaus Bønnelykke; Melanie C Matheson; Tune H Pers; Raquel Granell; David P Strachan; Alexessander Couto Alves; Allan Linneberg; John A Curtin; Nicole M Warrington; Marie Standl; Marjan Kerkhof; Ingileif Jonsdottir; Blazenka K Bukvic; Marika Kaakinen; Patrick Sleimann; Gudmar Thorleifsson; Unnur Thorsteinsdottir; Katharina Schramm; Svetlana Baltic; Eskil Kreiner-Møller; Angela Simpson; Beate St Pourcain; Lachlan Coin; Jennie Hui; Eugene H Walters; Carla M T Tiesler; David L Duffy; Graham Jones; Susan M Ring; Wendy L McArdle; Loren Price; Colin F Robertson; Juha Pekkanen; Clara S Tang; Elisabeth Thiering; Grant W Montgomery; Anna-Liisa Hartikainen; Shyamali C Dharmage; Lise L Husemoen; Christian Herder; John P Kemp; Paul Elliot; Alan James; Melanie Waldenberger; Michael J Abramson; Benjamin P Fairfax; Julian C Knight; Ramneek Gupta; Philip J Thompson; Patrick Holt; Peter Sly; Joel N Hirschhorn; Mario Blekic; Stephan Weidinger; Hakon Hakonarsson; Kari Stefansson; Joachim Heinrich; Dirkje S Postma; Adnan Custovic; Craig E Pennell; Marjo-Riitta Jarvelin; Gerard H Koppelman; Nicholas Timpson; Manuel A Ferreira; Hans Bisgaard; A John Henderson
Journal:  Nat Genet       Date:  2013-06-30       Impact factor: 38.330

7.  Systematic identification of trans eQTLs as putative drivers of known disease associations.

Authors:  Harm-Jan Westra; Marjolein J Peters; Tõnu Esko; Hanieh Yaghootkar; Claudia Schurmann; Johannes Kettunen; Mark W Christiansen; Bruce M Psaty; Samuli Ripatti; Alexander Teumer; Timothy M Frayling; Andres Metspalu; Joyce B J van Meurs; Lude Franke; Benjamin P Fairfax; Katharina Schramm; Joseph E Powell; Alexandra Zhernakova; Daria V Zhernakova; Jan H Veldink; Leonard H Van den Berg; Juha Karjalainen; Sebo Withoff; André G Uitterlinden; Albert Hofman; Fernando Rivadeneira; Peter A C 't Hoen; Eva Reinmaa; Krista Fischer; Mari Nelis; Lili Milani; David Melzer; Luigi Ferrucci; Andrew B Singleton; Dena G Hernandez; Michael A Nalls; Georg Homuth; Matthias Nauck; Dörte Radke; Uwe Völker; Markus Perola; Veikko Salomaa; Jennifer Brody; Astrid Suchy-Dicey; Sina A Gharib; Daniel A Enquobahrie; Thomas Lumley; Grant W Montgomery; Seiko Makino; Holger Prokisch; Christian Herder; Michael Roden; Harald Grallert; Thomas Meitinger; Konstantin Strauch; Yang Li; Ritsert C Jansen; Peter M Visscher; Julian C Knight
Journal:  Nat Genet       Date:  2013-09-08       Impact factor: 38.330

8.  The immune epitope database (IEDB) 3.0.

Authors:  Randi Vita; James A Overton; Jason A Greenbaum; Julia Ponomarenko; Jason D Clark; Jason R Cantrell; Daniel K Wheeler; Joseph L Gabbard; Deborah Hix; Alessandro Sette; Bjoern Peters
Journal:  Nucleic Acids Res       Date:  2014-10-09       Impact factor: 16.971

9.  Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.

Authors:  Supinda Bunyavanich; Eric E Schadt; Blanca E Himes; Jessica Lasky-Su; Weiliang Qiu; Ross Lazarus; John P Ziniti; Ariella Cohain; Michael Linderman; Dara G Torgerson; Celeste S Eng; Maria Pino-Yanes; Badri Padhukasahasram; James J Yang; Rasika A Mathias; Terri H Beaty; Xingnan Li; Penelope Graves; Isabelle Romieu; Blanca del Rio Navarro; M Towhid Salam; Hita Vora; Dan L Nicolae; Carole Ober; Fernando D Martinez; Eugene R Bleecker; Deborah A Meyers; W James Gauderman; Frank Gilliland; Esteban G Burchard; Kathleen C Barnes; L Keoki Williams; Stephanie J London; Bin Zhang; Benjamin A Raby; Scott T Weiss
Journal:  BMC Med Genomics       Date:  2014-08-02       Impact factor: 3.063

10.  An atlas of genetic correlations across human diseases and traits.

Authors:  Brendan Bulik-Sullivan; Hilary K Finucane; Verneri Anttila; Alexander Gusev; Felix R Day; Po-Ru Loh; Laramie Duncan; John R B Perry; Nick Patterson; Elise B Robinson; Mark J Daly; Alkes L Price; Benjamin M Neale
Journal:  Nat Genet       Date:  2015-09-28       Impact factor: 38.330

View more
  24 in total

1.  Epigenetic landscape links upper airway microbiota in infancy with allergic rhinitis at 6 years of age.

Authors:  Andréanne Morin; Chris G McKennan; Casper-Emil T Pedersen; Jakob Stokholm; Bo L Chawes; Ann-Marie Malby Schoos; Katherine A Naughton; Jonathan Thorsen; Martin S Mortensen; Donata Vercelli; Urvish Trivedi; Søren J Sørensen; Hans Bisgaard; Dan L Nicolae; Klaus Bønnelykke; Carole Ober
Journal:  J Allergy Clin Immunol       Date:  2020-07-18       Impact factor: 10.793

2.  The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases.

Authors:  Juan Antonio Vizcaíno; Peter Kubiniok; Kevin A Kovalchik; Qing Ma; Jérôme D Duquette; Ian Mongrain; Eric W Deutsch; Bjoern Peters; Alessandro Sette; Isabelle Sirois; Etienne Caron
Journal:  Mol Cell Proteomics       Date:  2019-11-19       Impact factor: 5.911

Review 3.  Advances in asthma and allergic disease genetics: Is bigger always better?

Authors:  Nathan Schoettler; Elke Rodríguez; Stephan Weidinger; Carole Ober
Journal:  J Allergy Clin Immunol       Date:  2019-10-31       Impact factor: 10.793

4.  Association of Gasdermin B Gene GSDMB Polymorphisms with Risk of Allergic Diseases.

Authors:  Alexandra S Karunas; Yuliya Yu Fedorova; Galiya F Gimalova; Esfir I Etkina; Elza K Khusnutdinova
Journal:  Biochem Genet       Date:  2021-05-08       Impact factor: 1.890

5.  Relationship between allergic sensitisation-associated single-nucleotide polymorphisms and allergic transfusion reactions and febrile non-haemolytic transfusion reactions in paediatric cases.

Authors:  Yuichiro Ide; Ryu Yanagisawa; Jun Kobayashi; Kazutoshi Komori; Kazuyuki Matsuda; Yuji Amano; Yozo Nakazawa; Toshikazu Takeshita; Kazuo Sakashita; Minoru Tozuka
Journal:  Blood Transfus       Date:  2021-02-03       Impact factor: 3.443

Review 6.  Current insights into the genetics of food allergy.

Authors:  Kanika Kanchan; Selene Clay; Haritz Irizar; Supinda Bunyavanich; Rasika A Mathias
Journal:  J Allergy Clin Immunol       Date:  2021-01-05       Impact factor: 10.793

7.  Transcriptomics of atopy and atopic asthma in white blood cells from children and adolescents.

Authors:  Yale Jiang; Olena Gruzieva; Ting Wang; Erick Forno; Nadia Boutaoui; Tao Sun; Simon K Merid; Edna Acosta-Pérez; Inger Kull; Glorisa Canino; Josep M Antó; Jean Bousquet; Erik Melén; Wei Chen; Juan C Celedón
Journal:  Eur Respir J       Date:  2019-05-18       Impact factor: 33.795

8.  Repetitive aeroallergen challenges elucidate maladaptive epithelial and inflammatory traits that underpin allergic airway diseases.

Authors:  Alisha M Smith; Nathan Harper; Justin A Meunier; Anne P Branum; Fabio Jimenez; Lavanya Pandranki; Andrew Carrillo; Charles S Dela Cruz; Marcos I Restrepo; Diego J Maselli; Cynthia G Rather; Anna H Heisser; Daniel A Ramirez; Weijing He; Robert A Clark; Charles P Andrews; Scott E Evans; Jacqueline A Pugh; Nu Zhang; Grace C Lee; Alvaro G Moreira; Leopoldo N Segal; Robert M Ramirez; Robert L Jacobs; Muthu Saravanan Manoharan; Jason F Okulicz; Sunil K Ahuja
Journal:  J Allergy Clin Immunol       Date:  2021-01-23       Impact factor: 14.290

9.  Ten-eleven translocation 2 modulates allergic inflammation by 5-hydroxymethylcytosine remodeling of immunologic pathways.

Authors:  Cuida Meng; Lei Gu; Yujing Li; Ronghua Li; Yiqu Cao; Ziyi Li; Emily G Allen; Dongdong Zhu; Peng Jin
Journal:  Hum Mol Genet       Date:  2021-10-13       Impact factor: 5.121

10.  Genetic Variation and Hot Flashes: A Systematic Review.

Authors:  Carolyn J Crandall; Allison L Diamant; Margaret Maglione; Rebecca C Thurston; Janet Sinsheimer
Journal:  J Clin Endocrinol Metab       Date:  2020-12-01       Impact factor: 5.958

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.