Literature DB >> 29998404

Cetacea are natural knockouts for IL20.

Mónica Lopes-Marques1, André M Machado1, Susana Barbosa1, Miguel M Fonseca1, Raquel Ruivo2, L Filipe C Castro3,4.   

Abstract

The Cetacea infraorder comprises a very unique group within the mammalian lineage. While sharing common ancestors with terrestrial mammals, their exclusive dependence on aquatic environments makes them attractive models to explore the landscape of molecular shifts in radical habitat transitions. Among their diverse anatomical and physiological solutions, we find detectable genetic remodeling of the immune system. In agreement, here we show that the gene sequence of interleukin-20 (IL20) displays unambiguous signs of inactivation with several disruptive mutations, including stop codons, insertions, and a conserved trans-species mutation abolishing a canonical splice site, in nine analyzed cetacean genomes. Considering the suggested role of IL20 in skin immunity processes, including inflammation, epithelization, and remodeling, we propose that gene inactivation follows specific adaptations of cetacean skin to the aquatic environment, in frame with the less-is-more hypothesis.

Entities:  

Keywords:  Cetacea; Gene loss; IL20; Immune system; Skin

Mesh:

Substances:

Year:  2018        PMID: 29998404     DOI: 10.1007/s00251-018-1071-5

Source DB:  PubMed          Journal:  Immunogenetics        ISSN: 0093-7711            Impact factor:   2.846


  36 in total

1.  Maximum-likelihood approaches reveal signatures of positive selection in IL genes in mammals.

Authors:  Fabiana Neves; Joana Abrantes; John W Steinke; Pedro J Esteves
Journal:  Innate Immun       Date:  2013-06-17       Impact factor: 2.680

2.  IL-24 transgenic mice: in vivo evidence of overlapping functions for IL-20, IL-22, and IL-24 in the epidermis.

Authors:  Miao He; Peng Liang
Journal:  J Immunol       Date:  2010-01-08       Impact factor: 5.422

3.  RELAX: detecting relaxed selection in a phylogenetic framework.

Authors:  Joel O Wertheim; Ben Murrell; Martin D Smith; Sergei L Kosakovsky Pond; Konrad Scheffler
Journal:  Mol Biol Evol       Date:  2014-12-23       Impact factor: 16.240

4.  Evolution of the MC5R gene in placental mammals with evidence for its inactivation in multiple lineages that lack sebaceous glands.

Authors:  Mark S Springer; John Gatesy
Journal:  Mol Phylogenet Evol       Date:  2017-12-19       Impact factor: 4.286

5.  Interleukin 20: discovery, receptor identification, and role in epidermal function.

Authors:  H Blumberg; D Conklin; W F Xu; A Grossmann; T Brender; S Carollo; M Eagan; D Foster; B A Haldeman; A Hammond; H Haugen; L Jelinek; J D Kelly; K Madden; M F Maurer; J Parrish-Novak; D Prunkard; S Sexson; C Sprecher; K Waggie; J West; T E Whitmore; L Yao; M K Kuechle; B A Dale; Y A Chandrasekher
Journal:  Cell       Date:  2001-01-12       Impact factor: 41.582

6.  Epidermal overexpression of interleukin-19 and -20 mRNA in psoriatic skin disappears after short-term treatment with cyclosporine a or calcipotriol.

Authors:  John Rømer; Erik Hasselager; Peder Lisby Nørby; Torben Steiniche; Jes Thorn Clausen; Knud Kragballe
Journal:  J Invest Dermatol       Date:  2003-12       Impact factor: 8.551

7.  Minke whale genome and aquatic adaptation in cetaceans.

Authors:  Hyung-Soon Yim; Yun Sung Cho; Xuanmin Guang; Sung Gyun Kang; Jae-Yeon Jeong; Sun-Shin Cha; Hyun-Myung Oh; Jae-Hak Lee; Eun Chan Yang; Kae Kyoung Kwon; Yun Jae Kim; Tae Wan Kim; Wonduck Kim; Jeong Ho Jeon; Sang-Jin Kim; Dong Han Choi; Sungwoong Jho; Hak-Min Kim; Junsu Ko; Hyunmin Kim; Young-Ah Shin; Hyun-Ju Jung; Yuan Zheng; Zhuo Wang; Yan Chen; Ming Chen; Awei Jiang; Erli Li; Shu Zhang; Haolong Hou; Tae Hyung Kim; Lili Yu; Sha Liu; Kung Ahn; Jesse Cooper; Sin-Gi Park; Chang Pyo Hong; Wook Jin; Heui-Soo Kim; Chankyu Park; Kyooyeol Lee; Sung Chun; Phillip A Morin; Stephen J O'Brien; Hang Lee; Jumpei Kimura; Dae Yeon Moon; Andrea Manica; Jeremy Edwards; Byung Chul Kim; Sangsoo Kim; Jun Wang; Jong Bhak; Hyun Sook Lee; Jung-Hyun Lee
Journal:  Nat Genet       Date:  2013-11-24       Impact factor: 38.330

8.  Comparative genomics reveals conservation of filaggrin and loss of caspase-14 in dolphins.

Authors:  Bettina Strasser; Veronika Mlitz; Heinz Fischer; Erwin Tschachler; Leopold Eckhart
Journal:  Exp Dermatol       Date:  2015-05       Impact factor: 3.960

9.  A comprehensive survey of non-canonical splice sites in the human transcriptome.

Authors:  Guillermo E Parada; Roberto Munita; Cledi A Cerda; Katia Gysling
Journal:  Nucleic Acids Res       Date:  2014-08-14       Impact factor: 16.971

10.  A genomics approach reveals insights into the importance of gene losses for mammalian adaptations.

Authors:  Virag Sharma; Nikolai Hecker; Juliana G Roscito; Leo Foerster; Bjoern E Langer; Michael Hiller
Journal:  Nat Commun       Date:  2018-03-23       Impact factor: 14.919

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  8 in total

1.  PseudoChecker: an integrated online platform for gene inactivation inference.

Authors:  Luís Q Alves; Raquel Ruivo; Miguel M Fonseca; Mónica Lopes-Marques; Pedro Ribeiro; L Filipe C Castro
Journal:  Nucleic Acids Res       Date:  2020-07-02       Impact factor: 16.971

2.  Convergent inactivation of the skin-specific C-C motif chemokine ligand 27 in mammalian evolution.

Authors:  Mónica Lopes-Marques; Luís Q Alves; Miguel M Fonseca; Giulia Secci-Petretto; André M Machado; Raquel Ruivo; L Filipe C Castro
Journal:  Immunogenetics       Date:  2019-05-02       Impact factor: 2.846

Review 3.  Cetacean epidermal specialization: A review.

Authors:  Gopinathan K Menon; Peter M Elias; Joan S Wakefield; Debra Crumrine
Journal:  Anat Histol Embryol       Date:  2022-06-27       Impact factor: 1.130

4.  Multifactorial processes underlie parallel opsin loss in neotropical bats.

Authors:  Alexa Sadier; Kalina Tj Davies; Laurel R Yohe; Kun Yun; Paul Donat; Brandon P Hedrick; Elizabeth R Dumont; Liliana M Dávalos; Stephen J Rossiter; Karen E Sears
Journal:  Elife       Date:  2018-12-18       Impact factor: 8.713

5.  GBA3: a polymorphic pseudogene in humans that experienced repeated gene loss during mammalian evolution.

Authors:  Monica Lopes-Marques; Catarina Serrano; Ana R Cardoso; Renato Salazar; Susana Seixas; António Amorim; Luisa Azevedo; Maria J Prata
Journal:  Sci Rep       Date:  2020-07-14       Impact factor: 4.379

6.  The Singularity of Cetacea Behavior Parallels the Complete Inactivation of Melatonin Gene Modules.

Authors:  Mónica Lopes-Marques; Raquel Ruivo; Luís Q Alves; Nelson Sousa; André M Machado; L Filipe C Castro
Journal:  Genes (Basel)       Date:  2019-02-06       Impact factor: 4.096

7.  The dopamine receptor D5 gene shows signs of independent erosion in toothed and baleen whales.

Authors:  Luís Q Alves; Juliana Alves; Rodrigo Ribeiro; Raquel Ruivo; Filipe Castro
Journal:  PeerJ       Date:  2019-10-11       Impact factor: 2.984

8.  Gene duplications and gene loss in the epidermal differentiation complex during the evolutionary land-to-water transition of cetaceans.

Authors:  Karin Brigit Holthaus; Julia Lachner; Bettina Ebner; Erwin Tschachler; Leopold Eckhart
Journal:  Sci Rep       Date:  2021-06-10       Impact factor: 4.379

  8 in total

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