Literature DB >> 29997238

Brachypodium: A Monocot Grass Model Genus for Plant Biology.

Karen-Beth G Scholthof1, Sonia Irigoyen2, Pilar Catalan3,4,5, Kranthi K Mandadi1,2.   

Abstract

The genus Brachypodium represents a model system that is advancing our knowledge of the biology of grasses, including small grains, in the postgenomics era. The most widely used species, Brachypodium distachyon, is a C3 plant that is distributed worldwide. B. distachyon has a small genome, short life cycle, and small stature and is amenable to genetic transformation. Due to the intensive and thoughtful development of this grass as a model organism, it is well-suited for laboratory and field experimentation. The intent of this review is to introduce this model system genus and describe some key outcomes of nearly a decade of research since the first draft genome sequence of the flagship species, B. distachyon, was completed. We discuss characteristics and features of B. distachyon and its congeners that make the genus a valuable model system for studies in ecology, evolution, genetics, and genomics in the grasses, review current hot topics in Brachypodium research, and highlight the potential for future analysis using this system in the coming years.
© 2018 American Society of Plant Biologists. All rights reserved.

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Year:  2018        PMID: 29997238      PMCID: PMC6139682          DOI: 10.1105/tpc.18.00083

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  135 in total

1.  Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes.

Authors:  Rubén Sancho; Carlos P Cantalapiedra; Diana López-Alvarez; Sean P Gordon; John P Vogel; Pilar Catalán; Bruno Contreras-Moreira
Journal:  New Phytol       Date:  2017-12-05       Impact factor: 10.151

Review 2.  Brachypodium distachyon as a Genetic Model System.

Authors:  Elizabeth A Kellogg
Journal:  Annu Rev Genet       Date:  2015-09-17       Impact factor: 16.830

3.  Involvement of COP1 in ethylene- and light-regulated hypocotyl elongation.

Authors:  Xiaolei Liang; Huahua Wang; Lina Mao; Yanfeng Hu; Tian Dong; Yongqiang Zhang; Xiaomin Wang; Yurong Bi
Journal:  Planta       Date:  2012-08-14       Impact factor: 4.116

4.  A rapid and efficient transformation protocol for the grass Brachypodium distachyon.

Authors:  Pernille Christiansen; Claus Henrik Andersen; Thomas Didion; Marianne Folling; Klaus Kristian Nielsen
Journal:  Plant Cell Rep       Date:  2004-10-19       Impact factor: 4.570

5.  Overexpression of wheat ubiquitin gene, Ta-Ub2, improves abiotic stress tolerance of Brachypodium distachyon.

Authors:  Hanhan Kang; Meng Zhang; Shumei Zhou; Qifang Guo; Fengjuan Chen; Jiajie Wu; Wei Wang
Journal:  Plant Sci       Date:  2016-04-29       Impact factor: 4.729

6.  Update on the genomics and basic biology of Brachypodium: International Brachypodium Initiative (IBI).

Authors:  Pilar Catalan; Boulos Chalhoub; Vincent Chochois; David F Garvin; Robert Hasterok; Antonio J Manzaneda; Luis A J Mur; Nicola Pecchioni; Søren K Rasmussen; John P Vogel; Aline Voxeur
Journal:  Trends Plant Sci       Date:  2014-06-07       Impact factor: 18.313

7.  Painting the chromosomes of Brachypodium: current status and future prospects.

Authors:  Dominika Idziak; Alexander Betekhtin; Elzbieta Wolny; Karolina Lesniewska; Jonathan Wright; Melanie Febrer; Michael W Bevan; Glyn Jenkins; Robert Hasterok
Journal:  Chromosoma       Date:  2011-06-11       Impact factor: 4.316

8.  Construction of high quality Gateway™ entry libraries and their application to yeast two-hybrid for the monocot model plant Brachypodium distachyon.

Authors:  Shuanghe Cao; Chamindika L Siriwardana; Roderick W Kumimoto; Ben F Holt
Journal:  BMC Biotechnol       Date:  2011-05-19       Impact factor: 2.563

9.  Araport: the Arabidopsis information portal.

Authors:  Vivek Krishnakumar; Matthew R Hanlon; Sergio Contrino; Erik S Ferlanti; Svetlana Karamycheva; Maria Kim; Benjamin D Rosen; Chia-Yi Cheng; Walter Moreira; Stephen A Mock; Joseph Stubbs; Julie M Sullivan; Konstantinos Krampis; Jason R Miller; Gos Micklem; Matthew Vaughn; Christopher D Town
Journal:  Nucleic Acids Res       Date:  2014-11-20       Impact factor: 16.971

10.  Characterization of Brachypodium distachyon as a nonhost model against switchgrass rust pathogen Puccinia emaculata.

Authors:  Upinder S Gill; Srinivasa R Uppalapati; Jin Nakashima; Kirankumar S Mysore
Journal:  BMC Plant Biol       Date:  2015-05-08       Impact factor: 4.215

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  28 in total

1.  A Deep Learning-Based Approach for High-Throughput Hypocotyl Phenotyping.

Authors:  Orsolya Dobos; Peter Horvath; Ferenc Nagy; Tivadar Danka; András Viczián
Journal:  Plant Physiol       Date:  2019-10-21       Impact factor: 8.340

2.  Improving bread wheat yield through modulating an unselected AP2/ERF gene.

Authors:  Yuange Wang; Fei Du; Jian Wang; Ke Wang; Caihuan Tian; Xiaoquan Qi; Fei Lu; Xigang Liu; Xingguo Ye; Yuling Jiao
Journal:  Nat Plants       Date:  2022-07-18       Impact factor: 17.352

Review 3.  Arabis alpina: A perennial model plant for ecological genomics and life-history evolution.

Authors:  Stefan Wötzel; Marco Andrello; Maria C Albani; Marcus A Koch; George Coupland; Felix Gugerli
Journal:  Mol Ecol Resour       Date:  2021-09-07       Impact factor: 8.678

4.  Transcriptional repression of TaNOX10 by TaWRKY19 compromises ROS generation and enhances wheat susceptibility to stripe rust.

Authors:  Ning Wang; Xin Fan; Mengying He; Zeyu Hu; Chunlei Tang; Shan Zhang; Dexing Lin; Pengfei Gan; Jianfeng Wang; Xueling Huang; Caixia Gao; Zhensheng Kang; Xiaojie Wang
Journal:  Plant Cell       Date:  2022-04-26       Impact factor: 12.085

5.  Brachypodium distachyon UNICULME4 and LAXATUM-A are redundantly required for development.

Authors:  Shengbin Liu; Kévin Magne; Sylviane Daniel; Richard Sibout; Pascal Ratet
Journal:  Plant Physiol       Date:  2022-01-20       Impact factor: 8.005

6.  Xyloglucan exoglycosidases in the monocot model Brachypodium distachyon and the conservation of xyloglucan disassembly in angiosperms.

Authors:  Diego Rubianes; Elene R Valdivia; Gloria Revilla; Ignacio Zarra; Javier Sampedro
Journal:  Plant Mol Biol       Date:  2019-04-26       Impact factor: 4.076

7.  YSL3-mediated copper distribution is required for fertility, seed size and protein accumulation in Brachypodium.

Authors:  Huajin Sheng; Yulin Jiang; Maryam Rahmati; Ju-Chen Chia; Tatyana Dokuchayeva; Yana Kavulych; Tetiana-Olena Zavodna; Patrick N Mendoza; Rong Huang; Louisa M Smieshka; Julia Miller; Arthur R Woll; Olga I Terek; Nataliya D Romanyuk; Miguel Piñeros; Yonghong Zhou; Olena K Vatamaniuk
Journal:  Plant Physiol       Date:  2021-05-27       Impact factor: 8.340

8.  Panicum Mosaic Virus and Its Satellites Acquire RNA Modifications Associated with Host-Mediated Antiviral Degradation.

Authors:  Jesse D Pyle; Kranthi K Mandadi; Karen-Beth G Scholthof
Journal:  mBio       Date:  2019-08-27       Impact factor: 7.867

9.  Mechanical stimulation in Brachypodium distachyon: Implications for fitness, productivity, and cell wall properties.

Authors:  Agnieszka Gladala-Kostarz; John H Doonan; Maurice Bosch
Journal:  Plant Cell Environ       Date:  2020-02-17       Impact factor: 7.228

10.  Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors.

Authors:  Sean P Gordon; Bruno Contreras-Moreira; Joshua J Levy; Armin Djamei; Angelika Czedik-Eysenberg; Virginia S Tartaglio; Adam Session; Joel Martin; Amy Cartwright; Andrew Katz; Vasanth R Singan; Eugene Goltsman; Kerrie Barry; Vinh Ha Dinh-Thi; Boulos Chalhoub; Antonio Diaz-Perez; Ruben Sancho; Joanna Lusinska; Elzbieta Wolny; Candida Nibau; John H Doonan; Luis A J Mur; Chris Plott; Jerry Jenkins; Samuel P Hazen; Scott J Lee; Shengqiang Shu; David Goodstein; Daniel Rokhsar; Jeremy Schmutz; Robert Hasterok; Pilar Catalan; John P Vogel
Journal:  Nat Commun       Date:  2020-07-29       Impact factor: 17.694

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