Literature DB >> 24917149

Update on the genomics and basic biology of Brachypodium: International Brachypodium Initiative (IBI).

Pilar Catalan1, Boulos Chalhoub2, Vincent Chochois3, David F Garvin4, Robert Hasterok5, Antonio J Manzaneda6, Luis A J Mur7, Nicola Pecchioni8, Søren K Rasmussen9, John P Vogel10, Aline Voxeur11.   

Abstract

The scientific presentations at the First International Brachypodium Conference (abstracts available at http://www.brachy2013.unimore.it) are evidence of the widespread adoption of Brachypodium distachyon as a model system. Furthermore, the wide range of topics presented (genome evolution, roots, abiotic and biotic stress, comparative genomics, natural diversity, and cell walls) demonstrates that the Brachypodium research community has achieved a critical mass of tools and has transitioned from resource development to addressing biological questions, particularly those unique to grasses.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Brachypodium; crop improvement; genomics; model plant

Mesh:

Year:  2014        PMID: 24917149     DOI: 10.1016/j.tplants.2014.05.002

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  25 in total

1.  Diversity and association of phenotypic and metabolomic traits in the close model grasses Brachypodium distachyon, B. stacei and B. hybridum.

Authors:  Diana López-Álvarez; Hassan Zubair; Manfred Beckmann; John Draper; Pilar Catalán
Journal:  Ann Bot       Date:  2017-03-01       Impact factor: 4.357

2.  Genomic architecture and functional relationships of intronless, constitutively- and alternatively-spliced genes in Brachypodium distachyon.

Authors:  Kranthi K Mandadi; Karen-Beth G Scholthof
Journal:  Plant Signal Behav       Date:  2015

3.  Genome-wide analysis of alternative splicing landscapes modulated during plant-virus interactions in Brachypodium distachyon.

Authors:  Kranthi K Mandadi; Karen-Beth G Scholthof
Journal:  Plant Cell       Date:  2015-01-29       Impact factor: 11.277

4.  Natural variation, differentiation, and genetic trade-offs of ecophysiological traits in response to water limitation in Brachypodium distachyon and its descendent allotetraploid B. hybridum (Poaceae).

Authors:  Antonio J Manzaneda; Pedro J Rey; Jill T Anderson; Evan Raskin; Christopher Weiss-Lehman; Thomas Mitchell-Olds
Journal:  Evolution       Date:  2015-09-28       Impact factor: 3.694

5.  An Efficient System for Ds Transposon Tagging in Brachypodium distachyon.

Authors:  Hongyu Wu; Xiaodong Xue; Caihua Qin; Yi Xu; Yuyu Guo; Xiang Li; Wei Lv; Qinxia Li; Chuangxue Mao; Luzhao Li; Suzhen Zhao; Xiaoquan Qi; Hailong An
Journal:  Plant Physiol       Date:  2019-03-13       Impact factor: 8.340

Review 6.  Brachypodium: A Monocot Grass Model Genus for Plant Biology.

Authors:  Karen-Beth G Scholthof; Sonia Irigoyen; Pilar Catalan; Kranthi K Mandadi
Journal:  Plant Cell       Date:  2018-07-11       Impact factor: 11.277

7.  Perspective: 50 years of plant chromosome biology.

Authors:  Richard B Flavell
Journal:  Plant Physiol       Date:  2021-04-02       Impact factor: 8.340

8.  Natural Variation in Brachypodium Links Vernalization and Flowering Time Loci as Major Flowering Determinants.

Authors:  Jan Bettgenhaeuser; Fiona M K Corke; Magdalena Opanowicz; Phon Green; Inmaculada Hernández-Pinzón; John H Doonan; Matthew J Moscou
Journal:  Plant Physiol       Date:  2016-09-20       Impact factor: 8.340

9.  Characterization of the LBD gene family in Brachypodium: a phylogenetic and transcriptional study.

Authors:  Magdolna Gombos; Zoltán Zombori; Mária Szécsényi; Györgyi Sándor; Hajnalka Kovács; János Györgyey
Journal:  Plant Cell Rep       Date:  2016-09-29       Impact factor: 4.570

10.  The Metabolic Response of Brachypodium Roots to the Interaction with Beneficial Bacteria Is Affected by the Plant Nutritional Status.

Authors:  Martino Schillaci; Cheka Kehelpannala; Federico Martinez-Seidel; Penelope M C Smith; Borjana Arsova; Michelle Watt; Ute Roessner
Journal:  Metabolites       Date:  2021-06-03
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