Literature DB >> 29988953

Node-Pore Coded Coincidence Correction: Coulter Counters, Code Design, and Sparse Deconvolution.

Michael Kellman1, Francois Rivest2,3, Alina Pechacek1, Lydia Sohn2,4, Michael Lustig1,4.   

Abstract

We present a novel method to perform individual particle (e.g. cells or viruses) coincidence correction through joint channel design and algorithmic methods. Inspired by multiple-user communication theory, we modulate the channel response, with Node-Pore Sensing, to give each particle a binary Barker code signature. When processed with our modified successive interference cancellation method, this signature enables both the separation of coincidence particles and a high sensitivity to small particles. We identify several sources of modeling error and mitigate most effects using a data-driven self-calibration step and robust regression. Additionally, we provide simulation analysis to highlight our robustness, as well as our limitations, to these sources of stochastic system model error. Finally, we conduct experimental validation of our techniques using several encoded devices to screen a heterogeneous sample of several size particles.

Entities:  

Keywords:  Barker Codes; Coincidence Correction; Computational Sensing; Coulter Counter; Inverse Problems; Node-Pore Sensing; Successive Interference Cancellation

Year:  2018        PMID: 29988953      PMCID: PMC6034687          DOI: 10.1109/JSEN.2018.2805865

Source DB:  PubMed          Journal:  IEEE Sens J        ISSN: 1530-437X            Impact factor:   4.325


  19 in total

Review 1.  Electrical/electrochemical impedance for rapid detection of foodborne pathogenic bacteria.

Authors:  Liju Yang; Rashid Bashir
Journal:  Biotechnol Adv       Date:  2007-11-12       Impact factor: 14.227

Review 2.  Label-free resistive-pulse cytometry.

Authors:  M R Chapman; L L Sohn
Journal:  Methods Cell Biol       Date:  2011       Impact factor: 1.441

Review 3.  Nanopore sensors for nucleic acid analysis.

Authors:  Bala Murali Venkatesan; Rashid Bashir
Journal:  Nat Nanotechnol       Date:  2011-09-18       Impact factor: 39.213

4.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

5.  Design and modeling of electrode networks for code-division multiplexed resistive pulse sensing in microfluidic devices.

Authors:  Ruxiu Liu; Waqas Waheed; Ningquan Wang; Ozgun Civelekoglu; Mert Boya; Chia-Heng Chu; A Fatih Sarioglu
Journal:  Lab Chip       Date:  2017-07-25       Impact factor: 6.799

6.  Node-pore sensing: a robust, high-dynamic range method for detecting biological species.

Authors:  Karthik R Balakrishnan; George Anwar; Matthew R Chapman; Trongtuong Nguyen; Anand Kesavaraju; Lydia L Sohn
Journal:  Lab Chip       Date:  2013-04-07       Impact factor: 6.799

7.  Leukocyte analysis and differentiation using high speed microfluidic single cell impedance cytometry.

Authors:  David Holmes; David Pettigrew; Christian H Reccius; James D Gwyer; Cees van Berkel; Judith Holloway; Donna E Davies; Hywel Morgan
Journal:  Lab Chip       Date:  2009-08-07       Impact factor: 6.799

8.  Size-selective collection of circulating tumor cells using Vortex technology.

Authors:  Elodie Sollier; Derek E Go; James Che; Daniel R Gossett; Sean O'Byrne; Westbrook M Weaver; Nicolas Kummer; Matthew Rettig; Jonathan Goldman; Nicholas Nickols; Susan McCloskey; Rajan P Kulkarni; Dino Di Carlo
Journal:  Lab Chip       Date:  2013-09-23       Impact factor: 6.799

9.  Node-pore sensing enables label-free surface-marker profiling of single cells.

Authors:  Karthik R Balakrishnan; Jeremy C Whang; Richard Hwang; James H Hack; Lucy A Godley; Lydia L Sohn
Journal:  Anal Chem       Date:  2015-02-12       Impact factor: 6.986

10.  A microfluidic device for label-free, physical capture of circulating tumor cell clusters.

Authors:  A Fatih Sarioglu; Nicola Aceto; Nikola Kojic; Maria C Donaldson; Mahnaz Zeinali; Bashar Hamza; Amanda Engstrom; Huili Zhu; Tilak K Sundaresan; David T Miyamoto; Xi Luo; Aditya Bardia; Ben S Wittner; Sridhar Ramaswamy; Toshi Shioda; David T Ting; Shannon L Stott; Ravi Kapur; Shyamala Maheswaran; Daniel A Haber; Mehmet Toner
Journal:  Nat Methods       Date:  2015-05-18       Impact factor: 28.547

View more
  1 in total

1.  Single-cell microfluidic impedance cytometry: from raw signals to cell phenotypes using data analytics.

Authors:  Carlos Honrado; Paolo Bisegna; Nathan S Swami; Federica Caselli
Journal:  Lab Chip       Date:  2021-01-05       Impact factor: 6.799

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.