Literature DB >> 33331376

Single-cell microfluidic impedance cytometry: from raw signals to cell phenotypes using data analytics.

Carlos Honrado1, Paolo Bisegna, Nathan S Swami, Federica Caselli.   

Abstract

The biophysical analysis of single-cells by microfluidic impedance cytometry is emerging as a label-free and high-throughput means to stratify the heterogeneity of cellular systems based on their electrophysiology. Emerging applications range from fundamental life-science and drug assessment research to point-of-care diagnostics and precision medicine. Recently, novel chip designs and data analytic strategies are laying the foundation for multiparametric cell characterization and subpopulation distinction, which are essential to understand biological function, follow disease progression and monitor cell behaviour in microsystems. In this tutorial review, we present a comparative survey of the approaches to elucidate cellular and subcellular features from impedance cytometry data, covering the related subjects of device design, data analytics (i.e., signal processing, dielectric modelling, population clustering), and phenotyping applications. We give special emphasis to the exciting recent developments of the technique (timeframe 2017-2020) and provide our perspective on future challenges and directions. Its synergistic application with microfluidic separation, sensor science and machine learning can form an essential toolkit for label-free quantification and isolation of subpopulations to stratify heterogeneous biosystems.

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Year:  2021        PMID: 33331376      PMCID: PMC7909465          DOI: 10.1039/d0lc00840k

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   6.799


  137 in total

1.  Characterization and optimization of liquid electrodes for lateral dielectrophoresis.

Authors:  Nicolas Demierre; Thomas Braschler; Pontus Linderholm; Urban Seger; Harald van Lintel; Philippe Renaud
Journal:  Lab Chip       Date:  2006-12-21       Impact factor: 6.799

2.  High speed multi-frequency impedance analysis of single particles in a microfluidic cytometer using maximum length sequences.

Authors:  Tao Sun; David Holmes; Shady Gawad; Nicolas G Green; Hywel Morgan
Journal:  Lab Chip       Date:  2007-06-08       Impact factor: 6.799

Review 3.  Dielectric spectroscopy as a viable biosensing tool for cell and tissue characterization and analysis.

Authors:  Khalil Heileman; Jamal Daoud; Maryam Tabrizian
Journal:  Biosens Bioelectron       Date:  2013-05-15       Impact factor: 10.618

4.  Characterization of subcellular morphology of single yeast cells using high frequency microfluidic impedance cytometer.

Authors:  Niels Haandbæk; Sebastian C Bürgel; Flavio Heer; Andreas Hierlemann
Journal:  Lab Chip       Date:  2013-11-22       Impact factor: 6.799

5.  Single cell impedance cytometry for identification and counting of CD4 T-cells in human blood using impedance labels.

Authors:  David Holmes; Hywel Morgan
Journal:  Anal Chem       Date:  2010-02-15       Impact factor: 6.986

6.  Cytocoded passwords: BioMEMS based barcoding of biological samples for user authentication in microfluidic diagnostic devices.

Authors:  Gabriel Salles-Loustau; Tuan Le; Laleh Najafizadeh; Saman Zonouz; Mehdi Javanmard
Journal:  Biomed Microdevices       Date:  2018-07-31       Impact factor: 2.838

7.  Scaling code-multiplexed electrode networks for distributed Coulter detection in microfluidics.

Authors:  Ruxiu Liu; Ningquan Wang; Norh Asmare; A Fatih Sarioglu
Journal:  Biosens Bioelectron       Date:  2018-08-01       Impact factor: 10.618

8.  Automated identification of stratifying signatures in cellular subpopulations.

Authors:  Robert V Bruggner; Bernd Bodenmiller; David L Dill; Robert J Tibshirani; Garry P Nolan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-16       Impact factor: 11.205

9.  Two-dimensional acoustic particle focusing enables sheathless chip Coulter counter with planar electrode configuration.

Authors:  Carl Grenvall; Christian Antfolk; Christer Zoffmann Bisgaard; Thomas Laurell
Journal:  Lab Chip       Date:  2014-10-10       Impact factor: 6.799

10.  Impedance-Based Microfluidic Assay for Automated Antischistosomal Drug Screening.

Authors:  Ketki Chawla; Mario M Modena; Paolo S Ravaynia; Flavio C Lombardo; Martin Leonhardt; Gordana Panic; Sebastian C Bürgel; Jennifer Keiser; Andreas Hierlemann
Journal:  ACS Sens       Date:  2018-11-28       Impact factor: 7.711

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  10 in total

1.  What is the future of electrical impedance spectroscopy in flow cytometry?

Authors:  Furkan Gökçe; Paolo S Ravaynia; Mario M Modena; Andreas Hierlemann
Journal:  Biomicrofluidics       Date:  2021-12-06       Impact factor: 2.800

2.  Automated biophysical classification of apoptotic pancreatic cancer cell subpopulations by using machine learning approaches with impedance cytometry.

Authors:  Carlos Honrado; Armita Salahi; Sara J Adair; John H Moore; Todd W Bauer; Nathan S Swami
Journal:  Lab Chip       Date:  2022-09-27       Impact factor: 7.517

3.  Assessment of the electrical penetration of cell membranes using four-frequency impedance cytometry.

Authors:  Tao Tang; Xun Liu; Yapeng Yuan; Tianlong Zhang; Ryota Kiya; Yang Yang; Kengo Suzuki; Yo Tanaka; Ming Li; Yoichiroh Hosokawa; Yaxiaer Yalikun
Journal:  Microsyst Nanoeng       Date:  2022-06-24       Impact factor: 8.006

4.  Self-aligned sequential lateral field non-uniformities over channel depth for high throughput dielectrophoretic cell deflection.

Authors:  XuHai Huang; Karina Torres-Castro; Walter Varhue; Armita Salahi; Ahmed Rasin; Carlos Honrado; Audrey Brown; Jennifer Guler; Nathan S Swami
Journal:  Lab Chip       Date:  2021-03-09       Impact factor: 6.799

5.  Modified Red Blood Cells as Multimodal Standards for Benchmarking Single-Cell Cytometry and Separation Based on Electrical Physiology.

Authors:  Armita Salahi; Carlos Honrado; Aditya Rane; Federica Caselli; Nathan S Swami
Journal:  Anal Chem       Date:  2022-02-02       Impact factor: 6.986

6.  Apoptotic Bodies in the Pancreatic Tumor Cell Culture Media Enable Label-Free Drug Sensitivity Assessment by Impedance Cytometry.

Authors:  Carlos Honrado; Sara J Adair; John H Moore; Armita Salahi; Todd W Bauer; Nathan S Swami
Journal:  Adv Biol (Weinh)       Date:  2021-05-20

Review 7.  Machine Learning-Driven Multiobjective Optimization: An Opportunity of Microfluidic Platforms Applied in Cancer Research.

Authors:  Yi Liu; Sijing Li; Yaling Liu
Journal:  Cells       Date:  2022-03-05       Impact factor: 6.600

Review 8.  Machine learning for microfluidic design and control.

Authors:  David McIntyre; Ali Lashkaripour; Polly Fordyce; Douglas Densmore
Journal:  Lab Chip       Date:  2022-08-09       Impact factor: 7.517

Review 9.  Developments of Conventional and Microfluidic Flow Cytometry Enabling High-Throughput Characterization of Single Cells.

Authors:  Minruihong Wang; Hongyan Liang; Xiao Chen; Deyong Chen; Junbo Wang; Yuan Zhang; Jian Chen
Journal:  Biosensors (Basel)       Date:  2022-06-23

10.  A label-free and low-power microelectronic impedance spectroscopy for characterization of exosomes.

Authors:  Leilei Shi; Leyla Esfandiari
Journal:  PLoS One       Date:  2022-07-08       Impact factor: 3.752

  10 in total

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