Literature DB >> 29983538

A Screening Rule for 1-Regularized Ising Model Estimation.

Zhaobin Kuang1, Sinong Geng1, David Page1.   

Abstract

We discover a screening rule for ℓ1-regularized Ising model estimation. The simple closed-form screening rule is a necessary and sufficient condition for exactly recovering the blockwise structure of a solution under any given regularization parameters. With enough sparsity, the screening rule can be combined with various optimization procedures to deliver solutions efficiently in practice. The screening rule is especially suitable for large-scale exploratory data analysis, where the number of variables in the dataset can be thousands while we are only interested in the relationship among a handful of variables within moderate-size clusters for interpretability. Experimental results on various datasets demonstrate the efficiency and insights gained from the introduction of the screening rule.

Entities:  

Year:  2017        PMID: 29983538      PMCID: PMC6030690     

Source DB:  PubMed          Journal:  Adv Neural Inf Process Syst        ISSN: 1049-5258


  18 in total

1.  Empirical comparison study of approximate methods for structure selection in binary graphical models.

Authors:  Vivian Viallon; Onureena Banerjee; Eric Jougla; Grégoire Rey; Joel Coste
Journal:  Biom J       Date:  2013-12-16       Impact factor: 2.207

2.  Proteomics. Tissue-based map of the human proteome.

Authors:  Mathias Uhlén; Linn Fagerberg; Björn M Hallström; Cecilia Lindskog; Per Oksvold; Adil Mardinoglu; Åsa Sivertsson; Caroline Kampf; Evelina Sjöstedt; Anna Asplund; IngMarie Olsson; Karolina Edlund; Emma Lundberg; Sanjay Navani; Cristina Al-Khalili Szigyarto; Jacob Odeberg; Dijana Djureinovic; Jenny Ottosson Takanen; Sophia Hober; Tove Alm; Per-Henrik Edqvist; Holger Berling; Hanna Tegel; Jan Mulder; Johan Rockberg; Peter Nilsson; Jochen M Schwenk; Marica Hamsten; Kalle von Feilitzen; Mattias Forsberg; Lukas Persson; Fredric Johansson; Martin Zwahlen; Gunnar von Heijne; Jens Nielsen; Fredrik Pontén
Journal:  Science       Date:  2015-01-23       Impact factor: 47.728

3.  Screening Tests for Lasso Problems.

Authors:  Zhen James Xiang; Yun Wang; Peter J Ramadge
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2016-05-12       Impact factor: 6.226

4.  Estimation of Sparse Binary Pairwise Markov Networks using Pseudo-likelihoods.

Authors:  Holger Höfling; Robert Tibshirani
Journal:  J Mach Learn Res       Date:  2009-04-01       Impact factor: 3.654

5.  Regularization Paths for Generalized Linear Models via Coordinate Descent.

Authors:  Jerome Friedman; Trevor Hastie; Rob Tibshirani
Journal:  J Stat Softw       Date:  2010       Impact factor: 6.440

6.  Strong rules for discarding predictors in lasso-type problems.

Authors:  Robert Tibshirani; Jacob Bien; Jerome Friedman; Trevor Hastie; Noah Simon; Jonathan Taylor; Ryan J Tibshirani
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2012-03       Impact factor: 4.488

7.  Partial Correlation Estimation by Joint Sparse Regression Models.

Authors:  Jie Peng; Pei Wang; Nengfeng Zhou; Ji Zhu
Journal:  J Am Stat Assoc       Date:  2009-06-01       Impact factor: 5.033

8.  Graphical-model Based Multiple Testing under Dependence, with Applications to Genome-wide Association Studies.

Authors:  Jie Liu; Peggy Peissig; Chunming Zhang; Elizabeth Burnside; Catherine McCarty; David Page
Journal:  Uncertain Artif Intell       Date:  2012

9.  Multiple Testing under Dependence via Semiparametric Graphical Models.

Authors:  Jie Liu; Chunming Zhang; Elizabeth Burnside; David Page
Journal:  JMLR Workshop Conf Proc       Date:  2014-12-31

10.  Content-rich biological network constructed by mining PubMed abstracts.

Authors:  Hao Chen; Burt M Sharp
Journal:  BMC Bioinformatics       Date:  2004-10-08       Impact factor: 3.169

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.