Literature DB >> 29972805

Errors in Energy Landscapes Measured with Particle Tracking.

Michał J Bogdan1, Thierry Savin2.   

Abstract

Tracking Brownian particles is often employed to map the energy landscape they explore. Such measurements have been exploited to study many biological processes and interactions in soft materials. Yet video tracking is irremediably contaminated by localization errors originating from two imaging artifacts: the "static" errors come from signal noise, and the "dynamic" errors arise from the motion blur due to finite frame-acquisition time. We show that these errors result in systematic and nontrivial biases in the measured energy landscapes. We derive a relationship between the true and the measured potential that elucidates, among other aberrations, the presence of false double-well minima in the apparent potentials reported in recent studies. We further assess several canonical trapping and pair-interaction potentials by using our analytically derived results and Brownian dynamics simulations. In particular, we show that the apparent spring stiffness of harmonic potentials (such as optical traps) is increased by dynamic errors but decreased by static errors. Our formula allows for the development of efficient corrections schemes, and we also present in this work a provisional method for reconstructing true potentials from the measured ones. Crown
Copyright © 2018. Published by Elsevier Inc. All rights reserved.

Mesh:

Year:  2018        PMID: 29972805      PMCID: PMC6037141          DOI: 10.1016/j.bpj.2018.05.035

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  59 in total

1.  Quantitative comparison of algorithms for tracking single fluorescent particles.

Authors:  M K Cheezum; W F Walker; W H Guilford
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

2.  Observing the confinement potential of bacterial pore-forming toxin receptors inside rafts with nonblinking Eu(3+)-doped oxide nanoparticles.

Authors:  Silvan Türkcan; Jean-Baptiste Masson; Didier Casanova; Geneviève Mialon; Thierry Gacoin; Jean-Pierre Boilot; Michel R Popoff; Antigoni Alexandrou
Journal:  Biophys J       Date:  2012-05-15       Impact factor: 4.033

3.  Microscopic measurement of the pair interaction potential of charge-stabilized colloid.

Authors: 
Journal:  Phys Rev Lett       Date:  1994-07-11       Impact factor: 9.161

4.  Geometry-induced electrostatic trapping of nanometric objects in a fluid.

Authors:  Madhavi Krishnan; Nassiredin Mojarad; Philipp Kukura; Vahid Sandoghdar
Journal:  Nature       Date:  2010-10-07       Impact factor: 49.962

5.  Static and dynamic errors in particle tracking microrheology.

Authors:  Thierry Savin; Patrick S Doyle
Journal:  Biophys J       Date:  2004-11-08       Impact factor: 4.033

6.  The effect of integration time on fluctuation measurements: calibrating an optical trap in the presence of motion blur.

Authors:  Wesley P Wong; Ken Halvorsen
Journal:  Opt Express       Date:  2006-12-11       Impact factor: 3.894

7.  Force-free measurements of the conformations of DNA molecules tethered to a wall.

Authors:  Moshe Lindner; Guy Nir; Shlomi Medalion; Heidelinde R C Dietrich; Yitzhak Rabin; Yuval Garini
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-01-27

Review 8.  A Primer on the Bayesian Approach to High-Density Single-Molecule Trajectories Analysis.

Authors:  Mohamed El Beheiry; Silvan Türkcan; Maximilian U Richly; Antoine Triller; Antigone Alexandrou; Maxime Dahan; Jean-Baptiste Masson
Journal:  Biophys J       Date:  2016-03-29       Impact factor: 4.033

9.  Single-Molecule Imaging of Nav1.6 on the Surface of Hippocampal Neurons Reveals Somatic Nanoclusters.

Authors:  Elizabeth J Akin; Laura Solé; Ben Johnson; Mohamed El Beheiry; Jean-Baptiste Masson; Diego Krapf; Michael M Tamkun
Journal:  Biophys J       Date:  2016-09-20       Impact factor: 4.033

10.  Objective comparison of particle tracking methods.

Authors:  Nicolas Chenouard; Ihor Smal; Fabrice de Chaumont; Martin Maška; Ivo F Sbalzarini; Yuanhao Gong; Janick Cardinale; Craig Carthel; Stefano Coraluppi; Mark Winter; Andrew R Cohen; William J Godinez; Karl Rohr; Yannis Kalaidzidis; Liang Liang; James Duncan; Hongying Shen; Yingke Xu; Klas E G Magnusson; Joakim Jaldén; Helen M Blau; Perrine Paul-Gilloteaux; Philippe Roudot; Charles Kervrann; François Waharte; Jean-Yves Tinevez; Spencer L Shorte; Joost Willemse; Katherine Celler; Gilles P van Wezel; Han-Wei Dan; Yuh-Show Tsai; Carlos Ortiz de Solórzano; Jean-Christophe Olivo-Marin; Erik Meijering
Journal:  Nat Methods       Date:  2014-01-19       Impact factor: 28.547

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