Literature DB >> 15533928

Static and dynamic errors in particle tracking microrheology.

Thierry Savin1, Patrick S Doyle.   

Abstract

Particle tracking techniques are often used to assess the local mechanical properties of cells and biological fluids. The extracted trajectories are exploited to compute the mean-squared displacement that characterizes the dynamics of the probe particles. Limited spatial resolution and statistical uncertainty are the limiting factors that alter the accuracy of the mean-squared displacement estimation. We precisely quantified the effect of localization errors in the determination of the mean-squared displacement by separating the sources of these errors into two separate contributions. A "static error" arises in the position measurements of immobilized particles. A "dynamic error" comes from the particle motion during the finite exposure time that is required for visualization. We calculated the propagation of these errors on the mean-squared displacement. We examined the impact of our error analysis on theoretical model fluids used in biorheology. These theoretical predictions were verified for purely viscous fluids using simulations and a multiple-particle tracking technique performed with video microscopy. We showed that the static contribution can be confidently corrected in dynamics studies by using static experiments performed at a similar noise-to-signal ratio. This groundwork allowed us to achieve higher resolution in the mean-squared displacement, and thus to increase the accuracy of microrheology studies.

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Year:  2004        PMID: 15533928      PMCID: PMC1305040          DOI: 10.1529/biophysj.104.042457

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  22 in total

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Authors:  U Kubitscheck; O Kückmann; T Kues; R Peters
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

2.  Investigating the microenvironments of inhomogeneous soft materials with multiple particle tracking.

Authors:  M T Valentine; P D Kaplan; D Thota; J C Crocker; T Gisler; R K Prud'homme; M Beck; D A Weitz
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-11-21

3.  Quantitative comparison of algorithms for tracking single fluorescent particles.

Authors:  M K Cheezum; W F Walker; W H Guilford
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

4.  Scaling the microrheology of living cells.

Authors:  B Fabry; G N Maksym; J P Butler; M Glogauer; D Navajas; J J Fredberg
Journal:  Phys Rev Lett       Date:  2001-09-13       Impact factor: 9.161

5.  Rheological microscopy: local mechanical properties from microrheology.

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Journal:  Phys Rev Lett       Date:  2003-03-14       Impact factor: 9.161

6.  Apparent subdiffusion inherent to single particle tracking.

Authors:  Douglas S Martin; Martin B Forstner; Josef A Käs
Journal:  Biophys J       Date:  2002-10       Impact factor: 4.033

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Journal:  Am J Phys       Date:  2003-03       Impact factor: 1.022

9.  Comparison of melting in three and two dimensions: Microscopy of colloidal spheres.

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10.  Tracking kinesin-driven movements with nanometre-scale precision.

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Journal:  Nature       Date:  1988-02-04       Impact factor: 49.962

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  125 in total

1.  Three-dimensional tracking of single mRNA particles in Saccharomyces cerevisiae using a double-helix point spread function.

Authors:  Michael A Thompson; Jason M Casolari; Majid Badieirostami; Patrick O Brown; W E Moerner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

2.  Analytical tools to distinguish the effects of localization error, confinement, and medium elasticity on the velocity autocorrelation function.

Authors:  Stephanie C Weber; Michael A Thompson; W E Moerner; Andrew J Spakowitz; Julie A Theriot
Journal:  Biophys J       Date:  2012-06-05       Impact factor: 4.033

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Journal:  Nat Nanotechnol       Date:  2012-06-24       Impact factor: 39.213

4.  Quantitative guidelines for force calibration through spectral analysis of magnetic tweezers data.

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Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

5.  Analysis of video-based microscopic particle trajectories using Kalman filtering.

Authors:  Pei-Hsun Wu; Ashutosh Agarwal; Henry Hess; Pramod P Khargonekar; Yiider Tseng
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

6.  Improving z-tracking accuracy in the two-photon single-particle tracking microscope.

Authors:  C Liu; Y-L Liu; E P Perillo; N Jiang; A K Dunn; H-C Yeh
Journal:  Appl Phys Lett       Date:  2015-10-12       Impact factor: 3.791

7.  Determining How Human Mesenchymal Stem Cells Change Their Degradation Strategy in Response to Microenvironmental Stiffness.

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Journal:  Biomacromolecules       Date:  2020-07-06       Impact factor: 6.988

8.  Gelation of Covalently Cross-Linked PEG-Heparin Hydrogels.

Authors:  Kelly M Schultz; Aaron D Baldwin; Kristi L Kiick; Eric M Furst
Journal:  Macromolecules       Date:  2009-07-28       Impact factor: 5.985

9.  Single-Molecule Tracking and Its Application in Biomolecular Binding Detection.

Authors:  Cong Liu; Yen-Liang Liu; Evan P Perillo; Andrew K Dunn; Hsin-Chih Yeh
Journal:  IEEE J Sel Top Quantum Electron       Date:  2016-05-17       Impact factor: 4.544

10.  Electrospinning covalently cross-linking biocompatible hydrogelators.

Authors:  Kelly M Schultz; Laura Campo-Deaño; Aaron D Baldwin; Kristi L Kiick; Christian Clasen; Eric M Furst
Journal:  Polymer (Guildf)       Date:  2012-11-09       Impact factor: 4.430

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