Literature DB >> 29970421

Shedding some blue light on alternative promoter usage in plants.

Brian D Gregory1.   

Abstract

Mesh：

Year:  2018        PMID： 29970421      PMCID： PMC6065016          DOI： 10.1073/pnas.1809312115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  15 in total

1.  CAGE: cap analysis of gene expression.

Authors:  Rimantas Kodzius; Miki Kojima; Hiromi Nishiyori; Mari Nakamura; Shiro Fukuda; Michihira Tagami; Daisuke Sasaki; Kengo Imamura; Chikatoshi Kai; Matthias Harbers; Yoshihide Hayashizaki; Piero Carninci
Journal:  Nat Methods       Date:  2006-03       Impact factor: 28.547

Review 2.  Regulation of plant translation by upstream open reading frames.

Authors:  Albrecht G von Arnim; Qidong Jia; Justin N Vaughn
Journal:  Plant Sci       Date:  2013-09-18       Impact factor: 4.729

3.  Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner.

Authors:  Tünde Nyikó; Boglárka Sonkoly; Zsuzsanna Mérai; Anna Hangyáné Benkovics; Dániel Silhavy
Journal:  Plant Mol Biol       Date:  2009-08-04       Impact factor: 4.076

Review 4.  Gene expression regulation in photomorphogenesis from the perspective of the central dogma.

Authors:  Shu-Hsing Wu
Journal:  Annu Rev Plant Biol       Date:  2014       Impact factor: 26.379

Review 5.  Untranslated Parts of Genes Interpreted: Making Heads or Tails of High-Throughput Transcriptomic Data via Computational Methods: Computational methods to discover and quantify isoforms with alternative untranslated regions.

Authors:  Krzysztof J Szkop; Irene Nobeli
Journal:  Bioessays       Date:  2017-10-20       Impact factor: 4.345

6.  Light Controls Protein Localization through Phytochrome-Mediated Alternative Promoter Selection.

Authors:  Tomokazu Ushijima; Kousuke Hanada; Eiji Gotoh; Wataru Yamori; Yutaka Kodama; Hiroyuki Tanaka; Miyako Kusano; Atsushi Fukushima; Mutsutomo Tokizawa; Yoshiharu Y Yamamoto; Yasuomi Tada; Yutaka Suzuki; Tomonao Matsushita
Journal:  Cell       Date:  2017-11-09       Impact factor: 41.582

7.  Polyamine-responsive ribosomal arrest at the stop codon of an upstream open reading frame of the AdoMetDC1 gene triggers nonsense-mediated mRNA decay in Arabidopsis thaliana.

Authors:  Naoko Uchiyama-Kadokura; Karin Murakami; Mariko Takemoto; Naoto Koyanagi; Katsunori Murota; Satoshi Naito; Hitoshi Onouchi
Journal:  Plant Cell Physiol       Date:  2014-06-14       Impact factor: 4.927

8.  Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development.

Authors:  Jungeun Lee; Kun He; Viktor Stolc; Horim Lee; Pablo Figueroa; Ying Gao; Waraporn Tongprasit; Hongyu Zhao; Ilha Lee; Xing Wang Deng
Journal:  Plant Cell       Date:  2007-03-02       Impact factor: 11.277

9.  Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis.

Authors:  Yukio Kurihara; Akihiro Matsui; Kousuke Hanada; Makiko Kawashima; Junko Ishida; Taeko Morosawa; Maho Tanaka; Eli Kaminuma; Yoshiki Mochizuki; Akihiro Matsushima; Tetsuro Toyoda; Kazuo Shinozaki; Motoaki Seki
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-30       Impact factor: 11.205

10.  Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light.

Authors:  Ullas V Pedmale; Shao-Shan Carol Huang; Mark Zander; Benjamin J Cole; Jonathan Hetzel; Karin Ljung; Pedro A B Reis; Priya Sridevi; Kazumasa Nito; Joseph R Nery; Joseph R Ecker; Joanne Chory
Journal:  Cell       Date:  2015-12-24       Impact factor: 41.582
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  2 in total

1.  Effects of light spectrum on the morphophysiology and gene expression of lateral branching in Pepino (Solanum muricatum).

Authors:  Cheng Si; Shipeng Yang; Xiangyun Lou; Guangnan Zhang; Qiwen Zhong
Journal:  Front Plant Sci       Date:  2022-09-23       Impact factor: 6.627

Review 2.  Getting started: altering promoter choice as a mechanism for cell type differentiation.

Authors:  Mukulika Ray; Erica Larschan
Journal:  Genes Dev       Date:  2020-05-01       Impact factor: 11.361
  2 in total

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