Literature DB >> 29962657

Sparse canonical correlation analysis between an alcohol biomarker and self-reported alcohol consumption.

Shanjun Helian1, Babette A Brumback1, Robert L Cook2.   

Abstract

In investigating the correlation between an alcohol biomarker and self-report, we developed a method to estimate the canonical correlation between two high-dimensional random vectors with a small sample size. In reviewing the relevant literature, we found that our method is somewhat similar to an existing method, but that the existing method has been criticized as lacking theoretical grounding in comparison with an alternative approach. We provide theoretical and empirical grounding for our method, and we customize it for our application to produce a novel method, which selects linear combinations that are step functions with a sparse number of steps.

Entities:  

Keywords:  L1 penalty; Partial canonical correlation; Primary 62H20; Regularized canonical correlation analysis; Repeated measures; Secondary 62G08

Year:  2017        PMID: 29962657      PMCID: PMC6020853          DOI: 10.1080/03610918.2016.1255971

Source DB:  PubMed          Journal:  Commun Stat Simul Comput        ISSN: 0361-0918            Impact factor:   1.118


  13 in total

1.  PHosphatidylethanol (PEth) concentrations in blood are correlated to reported alcohol intake in alcohol-dependent patients.

Authors:  Steina Aradottir; Gulber Asanovska; Stefan Gjerss; Per Hansson; Christer Alling
Journal:  Alcohol Alcohol       Date:  2006-04-19       Impact factor: 2.826

2.  Quantifying the association between gene expressions and DNA-markers by penalized canonical correlation analysis.

Authors:  Sandra Waaijenborg; Philip C Verselewel de Witt Hamer; Aeilko H Zwinderman
Journal:  Stat Appl Genet Mol Biol       Date:  2008-01-23

3.  Sparse canonical correlation analysis with application to genomic data integration.

Authors:  Elena Parkhomenko; David Tritchler; Joseph Beyene
Journal:  Stat Appl Genet Mol Biol       Date:  2009-01-06

Review 4.  Extensions of sparse canonical correlation analysis with applications to genomic data.

Authors:  Daniela M Witten; Robert J Tibshirani
Journal:  Stat Appl Genet Mol Biol       Date:  2009-06-09

5.  Phosphatidylethanol (PEth) as a biomarker of alcohol consumption in HIV-positive patients in sub-Saharan Africa.

Authors:  Judith A Hahn; Loren M Dobkin; Bernard Mayanja; Nneka I Emenyonu; Isaac M Kigozi; Stephen Shiboski; David R Bangsberg; Heike Gnann; Wolfgang Weinmann; Friedrich M Wurst
Journal:  Alcohol Clin Exp Res       Date:  2011-12-07       Impact factor: 3.455

6.  Phosphatidylethanol Compared with Other Blood Tests as a Biomarker of Moderate Alcohol Consumption in Healthy Volunteers: A Prospective Randomized Study.

Authors:  Stergios Kechagias; Dženeta Nezirević Dernroth; Anders Blomgren; Therese Hansson; Anders Isaksson; Lisa Walther; Robert Kronstrand; Bertil Kågedal; Fredrik H Nystrom
Journal:  Alcohol Alcohol       Date:  2015-04-15       Impact factor: 2.826

7.  Regularization Paths for Generalized Linear Models via Coordinate Descent.

Authors:  Jerome Friedman; Trevor Hastie; Rob Tibshirani
Journal:  J Stat Softw       Date:  2010       Impact factor: 6.440

8.  Monitoring of the alcohol biomarkers PEth, CDT and EtG/EtS in an outpatient treatment setting.

Authors:  Anders Helander; Oszkár Péter; Yufang Zheng
Journal:  Alcohol Alcohol       Date:  2012-06-12       Impact factor: 2.826

9.  Preliminary evaluation of phosphatidylethanol and alcohol consumption in patients with liver disease and hypertension.

Authors:  Scott H Stewart; Adrian Reuben; Walter A Brzezinski; David G Koch; Jan Basile; Patrick K Randall; Peter M Miller
Journal:  Alcohol Alcohol       Date:  2009-06-17       Impact factor: 2.826

10.  Genome-wide sparse canonical correlation of gene expression with genotypes.

Authors:  David Tritchler; Joseph Beyene; Elena Parkhomenko
Journal:  BMC Proc       Date:  2007-12-18
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  2 in total

1.  Phosphatidylethanol in Comparison to Self-Reported Alcohol Consumption Among HIV-Infected Women in a Randomized Controlled Trial of Naltrexone for Reducing Hazardous Drinking.

Authors:  Yan Wang; Xinguang Chen; Judith A Hahn; Babette Brumback; Zhi Zhou; Maria J Miguez; Robert L Cook
Journal:  Alcohol Clin Exp Res       Date:  2017-12-05       Impact factor: 3.455

2.  Secondary Analysis of a Randomized Clinical Trial of Naltrexone Among Women Living With HIV: Correlations Between Reductions in Self-Reported Alcohol Use and Changes in Phosphatidylethanol.

Authors:  Veronica L Richards; Ruba Sajdeya; Karina Villalba; Yan Wang; Vaughn Bryant; Babette Brumback; Kendall Bryant; Judith A Hahn; Robert L Cook
Journal:  Alcohol Clin Exp Res       Date:  2020-12-17       Impact factor: 3.455

  2 in total

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