Literature DB >> 29960322

SchNet - A deep learning architecture for molecules and materials.

K T Schütt1, H E Sauceda2, P-J Kindermans1, A Tkatchenko3, K-R Müller1.   

Abstract

Deep learning has led to a paradigm shift in artificial intelligence, including web, text, and image search, speech recognition, as well as bioinformatics, with growing impact in chemical physics. Machine learning, in general, and deep learning, in particular, are ideally suitable for representing quantum-mechanical interactions, enabling us to model nonlinear potential-energy surfaces or enhancing the exploration of chemical compound space. Here we present the deep learning architecture SchNet that is specifically designed to model atomistic systems by making use of continuous-filter convolutional layers. We demonstrate the capabilities of SchNet by accurately predicting a range of properties across chemical space for molecules and materials, where our model learns chemically plausible embeddings of atom types across the periodic table. Finally, we employ SchNet to predict potential-energy surfaces and energy-conserving force fields for molecular dynamics simulations of small molecules and perform an exemplary study on the quantum-mechanical properties of C20-fullerene that would have been infeasible with regular ab initio molecular dynamics.

Entities:  

Year:  2018        PMID: 29960322     DOI: 10.1063/1.5019779

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  90 in total

Review 1.  Machine Learning Force Fields and Coarse-Grained Variables in Molecular Dynamics: Application to Materials and Biological Systems.

Authors:  Paraskevi Gkeka; Gabriel Stoltz; Amir Barati Farimani; Zineb Belkacemi; Michele Ceriotti; John D Chodera; Aaron R Dinner; Andrew L Ferguson; Jean-Bernard Maillet; Hervé Minoux; Christine Peter; Fabio Pietrucci; Ana Silveira; Alexandre Tkatchenko; Zofia Trstanova; Rafal Wiewiora; Tony Lelièvre
Journal:  J Chem Theory Comput       Date:  2020-07-16       Impact factor: 6.006

Review 2.  Big-Data Science in Porous Materials: Materials Genomics and Machine Learning.

Authors:  Kevin Maik Jablonka; Daniele Ongari; Seyed Mohamad Moosavi; Berend Smit
Journal:  Chem Rev       Date:  2020-06-10       Impact factor: 60.622

Review 3.  QSAR without borders.

Authors:  Eugene N Muratov; Jürgen Bajorath; Robert P Sheridan; Igor V Tetko; Dmitry Filimonov; Vladimir Poroikov; Tudor I Oprea; Igor I Baskin; Alexandre Varnek; Adrian Roitberg; Olexandr Isayev; Stefano Curtarolo; Denis Fourches; Yoram Cohen; Alan Aspuru-Guzik; David A Winkler; Dimitris Agrafiotis; Artem Cherkasov; Alexander Tropsha
Journal:  Chem Soc Rev       Date:  2020-05-01       Impact factor: 54.564

4.  Materials Science in the AI age: high-throughput library generation, machine learning and a pathway from correlations to the underpinning physics.

Authors:  Rama K Vasudevan; Kamal Choudhary; Apurva Mehta; Ryan Smith; Gilad Kusne; Francesca Tavazza; Lukas Vlcek; Maxim Ziatdinov; Sergei V Kalinin; Jason Hattrick-Simpers
Journal:  MRS Commun       Date:  2019       Impact factor: 2.566

5.  Supervised learning through physical changes in a mechanical system.

Authors:  Menachem Stern; Chukwunonso Arinze; Leron Perez; Stephanie E Palmer; Arvind Murugan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-16       Impact factor: 11.205

6.  Predicting Molecular Energy Using Force-Field Optimized Geometries and Atomic Vector Representations Learned from an Improved Deep Tensor Neural Network.

Authors:  Jianing Lu; Cheng Wang; Yingkai Zhang
Journal:  J Chem Theory Comput       Date:  2019-06-12       Impact factor: 6.006

7.  Machine Learning for Electronically Excited States of Molecules.

Authors:  Julia Westermayr; Philipp Marquetand
Journal:  Chem Rev       Date:  2020-11-19       Impact factor: 60.622

8.  Learning to Make Chemical Predictions: the Interplay of Feature Representation, Data, and Machine Learning Methods.

Authors:  Mojtaba Haghighatlari; Jie Li; Farnaz Heidar-Zadeh; Yuchen Liu; Xingyi Guan; Teresa Head-Gordon
Journal:  Chem       Date:  2020-06-16       Impact factor: 22.804

9.  Deep-neural-network solution of the electronic Schrödinger equation.

Authors:  Jan Hermann; Zeno Schätzle; Frank Noé
Journal:  Nat Chem       Date:  2020-09-23       Impact factor: 24.427

Review 10.  Ab Initio Machine Learning in Chemical Compound Space.

Authors:  Bing Huang; O Anatole von Lilienfeld
Journal:  Chem Rev       Date:  2021-08-13       Impact factor: 60.622

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