Literature DB >> 29958882

A CRISPR-dCas Toolbox for Genetic Engineering and Synthetic Biology.

Xiaoshu Xu1, Lei S Qi2.   

Abstract

Programmable control of gene expression is essential to understanding gene function, engineering cellular behaviors, and developing therapeutics. Beyond the gene editing applications enabled by the nuclease CRISPR-Cas9 and CRISPR-Cas12a, the invention of the nuclease-dead Cas molecules (dCas9 and dCas12a) offers a platform for the precise control of genome function without gene editing. Diverse dCas tools have been developed, which constitute a comprehensive toolbox that allows for interrogation of gene function and modulation of the cellular behaviors. This review summarizes current applications of the dCas tools for transcription regulation, epigenetic engineering, genome imaging, genetic screens, and chromatin immunoprecipitation. We also highlight the advantages and existing challenges of the current dCas tools in genetic engineering and synthetic biology, and provide perspectives on future directions and applications.
Copyright © 2018. Published by Elsevier Ltd.

Entities:  

Keywords:  CRISPRi/a; dCas9; epigenome engineering; gene regulation; genetic screening

Year:  2018        PMID: 29958882     DOI: 10.1016/j.jmb.2018.06.037

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  71 in total

Review 1.  High-Diversity Mouse Populations for Complex Traits.

Authors:  Michael C Saul; Vivek M Philip; Laura G Reinholdt; Elissa J Chesler
Journal:  Trends Genet       Date:  2019-05-24       Impact factor: 11.639

Review 2.  Current strategies for Site-Directed RNA Editing using ADARs.

Authors:  Maria Fernanda Montiel-Gonzalez; Juan Felipe Diaz Quiroz; Joshua J C Rosenthal
Journal:  Methods       Date:  2018-11-29       Impact factor: 3.608

3.  CRISPR-Cas-Mediated Chemical Control of Transcriptional Dynamics in Yeast.

Authors:  Daniel Cunningham-Bryant; Jingwen Sun; Brianna Fernandez; Jesse G Zalatan
Journal:  Chembiochem       Date:  2019-04-26       Impact factor: 3.164

4.  Reduced thermal tolerance in a coral carrying CRISPR-induced mutations in the gene for a heat-shock transcription factor.

Authors:  Phillip A Cleves; Amanda I Tinoco; Jacob Bradford; Dimitri Perrin; Line K Bay; John R Pringle
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-09       Impact factor: 11.205

5.  Recent advances of genome editing and related technologies in China.

Authors:  Wen Sun; Haoyi Wang
Journal:  Gene Ther       Date:  2020-08-03       Impact factor: 5.250

6.  The importance and future of biochemical engineering.

Authors:  Timothy A Whitehead; Scott Banta; William E Bentley; Michael J Betenbaugh; Christina Chan; Douglas S Clark; Corinne A Hoesli; Michael C Jewett; Beth Junker; Mattheos Koffas; Rashmi Kshirsagar; Amanda Lewis; Chien-Ting Li; Costas Maranas; E Terry Papoutsakis; Kristala L J Prather; Steffen Schaffer; Laura Segatori; Ian Wheeldon
Journal:  Biotechnol Bioeng       Date:  2020-05-29       Impact factor: 4.530

7.  Synthetic Biology Perspectives of Microbial Enzymes and Their Innovative Applications.

Authors:  Pratyoosh Shukla
Journal:  Indian J Microbiol       Date:  2019-08-23       Impact factor: 2.461

8.  Cas9 interrogates DNA in discrete steps modulated by mismatches and supercoiling.

Authors:  Ivan E Ivanov; Addison V Wright; Joshua C Cofsky; Kevin D Palacio Aris; Jennifer A Doudna; Zev Bryant
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-02       Impact factor: 11.205

Review 9.  Decoding pluripotency: Genetic screens to interrogate the acquisition, maintenance, and exit of pluripotency.

Authors:  Qing V Li; Bess P Rosen; Danwei Huangfu
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2019-08-13

10.  Small-molecule inducible transcriptional control in mammalian cells.

Authors:  Aarti Doshi; Fatemeh Sadeghi; Navin Varadarajan; Patrick C Cirino
Journal:  Crit Rev Biotechnol       Date:  2020-08-30       Impact factor: 8.429

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