Literature DB >> 31407519

Decoding pluripotency: Genetic screens to interrogate the acquisition, maintenance, and exit of pluripotency.

Qing V Li1,2, Bess P Rosen1,3, Danwei Huangfu1.   

Abstract

Pluripotent stem cells have the ability to unlimitedly self-renew and differentiate to any somatic cell lineage. A number of systems biology approaches have been used to define this pluripotent state. Complementary to systems level characterization, genetic screens offer a unique avenue to functionally interrogate the pluripotent state and identify the key players in pluripotency acquisition and maintenance, exit of pluripotency, and lineage differentiation. Here we review how genetic screens have helped us decode pluripotency regulation. We will summarize results from RNA interference (RNAi) based screens, discuss recent advances in CRISPR/Cas-based genetic perturbation methods, and how these advances have made it possible to more comprehensively interrogate pluripotency and differentiation through genetic screens. Such investigations will not only provide a better understanding of this unique developmental state, but may enhance our ability to use pluripotent stem cells as an experimental model to study human development and disease progression. Functional interrogation of pluripotency also provides a valuable roadmap for utilizing genetic perturbation to gain systems level understanding of additional cellular states, from later stages of development to pathological disease states. This article is categorized under: Developmental Biology > Stem Cell Biology and Regeneration Developmental Biology > Developmental Processes in Health and Disease Biological Mechanisms > Cell Fates.
© 2019 Wiley Periodicals, Inc.

Entities:  

Keywords:  CRISPR; RNAi; differentiation; embryonic stem cells; genetic screens; pluripotency

Mesh:

Year:  2019        PMID: 31407519      PMCID: PMC6898739          DOI: 10.1002/wsbm.1464

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Syst Biol Med        ISSN: 1939-005X


  187 in total

Review 1.  A primer on using pooled shRNA libraries for functional genomic screens.

Authors:  Guang Hu; Ji Luo
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2012-02       Impact factor: 3.848

2.  Derivation of novel human ground state naive pluripotent stem cells.

Authors:  Ohad Gafni; Leehee Weinberger; Abed AlFatah Mansour; Yair S Manor; Elad Chomsky; Dalit Ben-Yosef; Yael Kalma; Sergey Viukov; Itay Maza; Asaf Zviran; Yoach Rais; Zohar Shipony; Zohar Mukamel; Vladislav Krupalnik; Mirie Zerbib; Shay Geula; Inbal Caspi; Dan Schneir; Tamar Shwartz; Shlomit Gilad; Daniela Amann-Zalcenstein; Sima Benjamin; Ido Amit; Amos Tanay; Rada Massarwa; Noa Novershtern; Jacob H Hanna
Journal:  Nature       Date:  2013-10-30       Impact factor: 49.962

3.  A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.

Authors:  Na-Yu Chia; Yun-Shen Chan; Bo Feng; Xinyi Lu; Yuriy L Orlov; Dimitri Moreau; Pankaj Kumar; Lin Yang; Jianming Jiang; Mei-Sheng Lau; Mikael Huss; Boon-Seng Soh; Petra Kraus; Pin Li; Thomas Lufkin; Bing Lim; Neil D Clarke; Frederic Bard; Huck-Hui Ng
Journal:  Nature       Date:  2010-10-17       Impact factor: 49.962

4.  Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells.

Authors:  Liying Yan; Mingyu Yang; Hongshan Guo; Lu Yang; Jun Wu; Rong Li; Ping Liu; Ying Lian; Xiaoying Zheng; Jie Yan; Jin Huang; Ming Li; Xinglong Wu; Lu Wen; Kaiqin Lao; Ruiqiang Li; Jie Qiao; Fuchou Tang
Journal:  Nat Struct Mol Biol       Date:  2013-08-11       Impact factor: 15.369

5.  Micropattern differentiation of mouse pluripotent stem cells recapitulates embryo regionalized cell fate patterning.

Authors:  Sophie M Morgani; Jakob J Metzger; Jennifer Nichols; Eric D Siggia; Anna-Katerina Hadjantonakis
Journal:  Elife       Date:  2018-02-07       Impact factor: 8.140

6.  Tracing the transitions from pluripotency to germ cell fate with CRISPR screening.

Authors:  Jamie A Hackett; Yun Huang; Ufuk Günesdogan; Kristjan A Gretarsson; Toshihiro Kobayashi; M Azim Surani
Journal:  Nat Commun       Date:  2018-10-16       Impact factor: 14.919

7.  A genetic screen using the PiggyBac transposon in haploid cells identifies Parp1 as a mediator of olaparib toxicity.

Authors:  Stephen J Pettitt; Farah L Rehman; Ilirjana Bajrami; Rachel Brough; Fredrik Wallberg; Iwanka Kozarewa; Kerry Fenwick; Ioannis Assiotis; Lina Chen; James Campbell; Christopher J Lord; Alan Ashworth
Journal:  PLoS One       Date:  2013-04-25       Impact factor: 3.240

8.  The Slug gene is not essential for mesoderm or neural crest development in mice.

Authors:  R Jiang; Y Lan; C R Norton; J P Sundberg; T Gridley
Journal:  Dev Biol       Date:  1998-06-15       Impact factor: 3.582

9.  Transcriptional repression by the BRG1-SWI/SNF complex affects the pluripotency of human embryonic stem cells.

Authors:  Xiaoli Zhang; Bing Li; Wenguo Li; Lijuan Ma; Dongyan Zheng; Leping Li; Weijing Yang; Min Chu; Wei Chen; Richard B Mailman; Jun Zhu; Guoping Fan; Trevor K Archer; Yuan Wang
Journal:  Stem Cell Reports       Date:  2014-08-14       Impact factor: 7.765

10.  Derivation of pluripotent epiblast stem cells from mammalian embryos.

Authors:  I Gabrielle M Brons; Lucy E Smithers; Matthew W B Trotter; Peter Rugg-Gunn; Bowen Sun; Susana M Chuva de Sousa Lopes; Sarah K Howlett; Amanda Clarkson; Lars Ahrlund-Richter; Roger A Pedersen; Ludovic Vallier
Journal:  Nature       Date:  2007-06-27       Impact factor: 49.962

View more
  5 in total

1.  Gene expression pattern of trophoblast-specific transcription factors in trophectoderm by analysis of single-cell RNA-seq data of human blastocyst.

Authors:  Yajun Liu; Yi Zhang; Shiwen Li; Jinquan Cui
Journal:  Funct Integr Genomics       Date:  2021-02-05       Impact factor: 3.410

2.  CRISPR screening uncovers a central requirement for HHEX in pancreatic lineage commitment and plasticity restriction.

Authors:  Dapeng Yang; Hyunwoo Cho; Zakieh Tayyebi; Abhijit Shukla; Renhe Luo; Gary Dixon; Valeria Ursu; Stephanie Stransky; Daniel M Tremmel; Sara D Sackett; Richard Koche; Samuel J Kaplan; Qing V Li; Jiwoon Park; Zengrong Zhu; Bess P Rosen; Julian Pulecio; Zhong-Dong Shi; Yaron Bram; Robert E Schwartz; Jon S Odorico; Simone Sidoli; Christopher V Wright; Christina S Leslie; Danwei Huangfu
Journal:  Nat Cell Biol       Date:  2022-07-04       Impact factor: 28.213

3.  Geometrically defined environments direct cell division rate and subcellular YAP localization in single mouse embryonic stem cells.

Authors:  Sarah Bertels; Mona Jaggy; Benjamin Richter; Stephan Keppler; Kerstin Weber; Elisa Genthner; Andrea C Fischer; Michael Thiel; Martin Wegener; Alexandra M Greiner; Tatjana J Autenrieth; Martin Bastmeyer
Journal:  Sci Rep       Date:  2021-04-29       Impact factor: 4.379

4.  Defining the Pluripotent Marker Genes for Identification of Teleost Fish Cell Pluripotency During Reprogramming.

Authors:  Huajin Li; Wenting Xu; Sijia Xiang; Leiting Tao; Wen Fu; Jinhui Liu; Wenbin Liu; Yamei Xiao; Liangyue Peng
Journal:  Front Genet       Date:  2022-02-11       Impact factor: 4.599

5.  NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation.

Authors:  Laura Santini; Elena Galimberti; Michelle Huth; Julia Ramesmayer; Fabian Titz-Teixeira; Robert Sehlke; Michael Oberhuemer; Sarah Stummer; Veronika Herzog; Marius Garmhausen; Merrit Romeike; Anastasia Chugunova; Friederike Leesch; Laurenz Holcik; Klara Weipoltshammer; Andreas Lackner; Christian Schoefer; Arndt von Haeseler; Christa Buecker; Andrea Pauli; Stefan L Ameres; Austin Smith; Andreas Beyer; Martin Leeb
Journal:  Genes Dev       Date:  2022-03-03       Impact factor: 11.361

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.