Literature DB >> 29951244

Crystal structure of racemic 2-[(β-arabino-pyran-osyl)-sulfanyl]-4,6-diphenylpyridine-3-carbo-nitrile.

Sherif F Hammad1, Doaa M Masoud2, Galal H Elgemeie2, Peter G Jones3.   

Abstract

In the racemic title compound, C23H20N2O4S, the sulfur atom is attached equatorially to the sugar ring with unequal S-C bonds, viz.: S-Cs = 1.808 (2) and S-Cp = 1.770 (2) Å (s = sugar, p = pyrid-yl). The dihedral angles between the pyridine ring and its attached phenyl groups are 42.24 (8) and 6.37 (14)°. In the crystal, a system of classical O-H⋯O and O-H⋯(O,O) hydrogen bonds links the mol-ecules to form tube-like assemblies propagating parallel to the c-axis direction. Weak C-H⋯N inter-actions are also observed.

Entities:  

Keywords:  arabinose; crystal structure; hydrogen bond; pyridine

Year:  2018        PMID: 29951244      PMCID: PMC6002821          DOI: 10.1107/S2056989018007284

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

In recent years, nucleoside analogues of pyrimidines and purines have been shown to be effective as chemical therapeutic agents against cancer cells (Yoshimura et al., 2000 ▸; Elgemeie et al., 2016 ▸, 2017a ▸,b ▸). Recently, heterocyclic thio­glycosides have been used as anti­metabolic agents in medicinal chemistry (Dinkelaar et al., 2006 ▸; Kananovich et al., 2014 ▸; Elgemeie & Abu-Zaied, 2017 ▸). We and others have designed new syntheses for pyridine thio­glycosides, which have shown strong cytotoxicity against various human cancer cell lines and block proliferation of various cancer cell lines (Komor et al., 2012 ▸; Elgemeie et al., 2015 ▸). It has also been shown that thio­glycosides involving pyridine and di­hydro­pyridine groups exert inhibitory effects on both DNA-containing viruses and inhibitors of protein glycosyl­ation (Agrawal et al., 2017 ▸; Elgemeie et al., 2010 ▸; Masoud et al., 2017 ▸). Based on these significant biological findings and with the aim of identifying new potent chemotherapeutics as new anti­cancer agents with improved pharmacological and safety profiles, we have prepared several new non-classical thio­glycosides containing the pyridine ring. Here we report a one-step synthesis of the pyridine-2-thio­arabinoside (4) by the reaction of the pyridine-2 (1H)-thione derivative (1) with 2,3,4-tri-O-acetyl-α-d-arabino­pyranosyl bromide (2). Thus, (1) reacted with (2) in KOH in acetone to give a product for which two isomeric N- or S-arabinoside structures were conceivable, corresponding to two possible modes of glycosyl­ation. The final deprotected product (see Scheme) would then be either the pyridine-2-thio­arabinoside (4) or its regioisomer pyridine-2-thione-N-arab­inoside (5). Spectroscopic data cannot differentiate between these two structures.

Structural commentary

The crystal structure determination indicated unambiguously the formation of the pyridine-2-thio­arabinoside (4) as the only product in the solid state. We suggest that the 2,3,4-tri-O-acetyl-α-d-arabinopranosyl bromide (2) inter­acts via a simple SN2 reaction to give the β-glycoside product (3), which after deprotection leads to the free 2-(β-d/l-arabino­pyran­osyl­thio)-pyridine-3-carbo­nitrile (4). This separates as a racemic mixture, presumably because of thermodynamic racemization during synthesis or crystallization (Brands & Davies, 2006 ▸). The mol­ecular structure of (4) is shown in Fig. 1 ▸. The sulfur atom is attached equatorially to the sugar ring. Similarly to the structure of a related glucose derivative (Masoud et al., 2017 ▸), the C—S bond lengths are unequal, with S—Cs 1.808 (2) and S—Cp 1.770 (2) Å (s = sugar, p = pyrid­yl). The phenyl ring at C31 is approximately coplanar with the pyridyl ring, but the ring at C21 is significantly rotated (inter­planar angles = 6.4 (2) and 42.24 (8)°, respectively). The relative orientation of the pyridyl ring and the sugar moiety is defined by the torsion angles N1—C2—S1—C11 9.7 (2) and C2—S1—C11—C12 162.73 (12)°. The intra­molecular contact O1—H01⋯S1, with H⋯S 2.79 (4) Å and an angle of 109 (3)°, is probably too long and has too narrow an angle to be considered a hydrogen bond.
Figure 1

Structure of the title compound (4) in the crystal. Ellipsoids represent 50% probability levels.

Supra­molecular features

In the crystal, the mol­ecules are connected by two-centre O2—H02⋯O3ii and O3—H03⋯O3ii hydrogen bonds and a three-centre O1—H01⋯O1i,O2i hydrogen bond (Table 1 ▸), via the operator, thus forming tube-like assemblies parallel to the c axis (Figs. 2 ▸ and 3 ▸). The short S1⋯O1 (1 − y, x, 1 − z) contact of 3.2374 (16) Å (van der Waals’ contact distance = 3.32 Å) may play a supporting role, but is not shown explicitly.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H01⋯O2i 0.85 (4)2.12 (4)2.831 (2)140 (3)
O1—H01⋯O1i 0.85 (4)2.42 (3)3.133 (2)141 (3)
O2—H02⋯O3ii 0.81 (3)2.07 (4)2.883 (2)175 (3)
O3—H03⋯O3ii 0.82 (4)1.94 (4)2.729 (2)159 (4)
C13—H13⋯N2iii 1.002.573.547 (3)165
C34—H34⋯N2iv 0.952.513.404 (3)157

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

Figure 2

Packing diagram of (4) projected parallel to the c axis. Dashed lines indicate classical hydrogen bonds.

Figure 3

Packing diagram of (4) viewed parallel to the a axis. Dashed lines indicate classical hydrogen bonds. Phenyl rings are represented by the ipso carbon atoms only.

Database survey

There is one other structure involving arabinose with a sulfur substituent at the C2 position; the arabinose is tri­acetyl­ated and the sulfur atom, which is axially bonded to the sugar ring, acts as a bridge to a pyran­opyrimidine ring system (Tomas et al., 1993 ▸; refcode WACJAL).

Synthesis and crystallization

To a solution of the pyridine-2-(1H)-thione (1) (2.88 g, 0.01 mol) in aqueous potassium hydroxide (6 ml, 0.56 g, 0.01 mol) was added a solution of 2,3,4-tri-O-acetyl-α-d-arabino­pyranosyl bromide (2) (3.73 g, 0.011 mol) in acetone (30 ml). The reaction mixture was stirred at room temperature until the reaction was judged complete by TLC (30 min to 2 h). The mixture was evaporated under reduced pressure at 313 K and the residue was washed with distilled water to remove the potassium bromide. The solid was collected by filtration and crystallized from ethanol to give compound (3) in 70% yield (m. p. 440–442 K). Dry gaseous ammonia was then passed through a solution of the protected thio­glycoside (3) (0.5 g) in dry methanol (20 ml) at 273 K for 15 min, and the mixture was stirred at 273 K until the reaction was complete (TLC, 1–2 h). The mixture was evaporated at 313 K to give a solid residue, which was recrystallized from methanol solution to give compound (4) in 60% yield (m.p. 479–480 K), IR (KBr): 3370–3480 (OH); 2222 (CN) cm−1. 1H NMR (400 MHz, DMSO-d 6): δ 3.10–3.70 (m, 5H, 2H-5′, H-4′, H-3′, H-2′); 4.81–5.20 (m, 3H, 3OH); 5.52 (d, 1H, H-1′), 7.05–7.78 (m, 10H, 2C6H5), 7.99 (s, 1H, pyridine H-5). Analysis calculated for C23H20N2O4S (420.47): C, 65.60%; H, 4.76%; N, 6.66%. Found: C, 65.48%; H, 4.84%; N, 6.41%.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. OH hydrogen atoms were refined freely. Other hydrogen atoms were included using a riding model starting from calculated positions (C—Haromatic = 0.95, C—Hmethyl­ene = 0.99, CHmethine = 1.00 Å) with U iso(H) = 1.2–1.5U eq(C).
Table 2

Experimental details

Crystal data
Chemical formulaC23H20N2O4S
M r 420.47
Crystal system, space groupTetragonal, P 21 c
Temperature (K)100
a, c (Å)21.8333 (2), 8.67551 (17)
V3)4135.54 (11)
Z 8
Radiation typeCu Kα
μ (mm−1)1.67
Crystal size (mm)0.2 × 0.2 × 0.1
 
Data collection
DiffractometerOxford Diffraction Xcalibur, Atlas, Nova
Absorption correctionMulti-scan (CrysAlis PRO; Rigaku OD, 2015)
T min, T max 0.631, 1.000
No. of measured, independent and observed [I > 2σ(I)] reflections22380, 4067, 3766
R int 0.050
(sin θ/λ)max−1)0.629
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.029, 0.072, 1.04
No. of reflections4067
No. of parameters283
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.14, −0.21
Absolute structureFlack x determined using 1455 quotients [(I +)−(I )]/[(I +)+(I )] (Parsons et al., 2013)
Absolute structure parameter−0.001 (9)

Computer programs: CrysAlis PRO (Rigaku OD, 2015 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2017/1 (Sheldrick, 2015 ▸) and XP (Siemens, 1994 ▸).

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989018007284/hb7743sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989018007284/hb7743Isup2.hkl CCDC reference: 1843269 Additional supporting information: crystallographic information; 3D view; checkCIF report
C23H20N2O4SDx = 1.351 Mg m3
Mr = 420.47Cu Kα radiation, λ = 1.54184 Å
Tetragonal, P421cCell parameters from 11865 reflections
a = 21.8333 (2) Åθ = 4.0–75.7°
c = 8.67551 (17) ŵ = 1.67 mm1
V = 4135.54 (11) Å3T = 100 K
Z = 8Irregular tablet, colourless
F(000) = 17600.2 × 0.2 × 0.1 mm
Oxford Diffraction Xcalibur, Atlas, Nova diffractometer4067 independent reflections
Radiation source: micro-focus sealed X-ray tube3766 reflections with I > 2σ(I)
Detector resolution: 10.3543 pixels mm-1Rint = 0.050
ω–scanθmax = 76.0°, θmin = 4.1°
Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2015)h = −27→19
Tmin = 0.631, Tmax = 1.000k = −23→26
22380 measured reflectionsl = −10→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.029H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.072w = 1/[σ2(Fo2) + (0.0406P)2 + 0.206P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
4067 reflectionsΔρmax = 0.14 e Å3
283 parametersΔρmin = −0.21 e Å3
0 restraintsAbsolute structure: Flack x determined using 1455 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: −0.001 (9)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane) 9.6921 (0.0225) x - 5.4261 (0.0258) y - 7.4689 (0.0051) z = 2.9936 (0.0259) * -0.0092 (0.0019) C21 * 0.0029 (0.0022) C22 * 0.0049 (0.0023) C23 * -0.0063 (0.0021) C24 * -0.0001 (0.0019) C25 * 0.0078 (0.0018) C26 Rms deviation of fitted atoms = 0.0060 7.1279 (0.0186) x + 10.0786 (0.0190) y - 7.1557 (0.0046) z = 5.9951 (0.0155) Angle to previous plane (with approximate esd) = 42.243 ( 0.080 ) * 0.0110 (0.0015) N1 * 0.0192 (0.0017) C2 * -0.0324 (0.0017) C3 * 0.0172 (0.0016) C4 * 0.0119 (0.0016) C5 * -0.0269 (0.0016) C6 Rms deviation of fitted atoms = 0.0212 9.0031 (0.0245) x + 8.5392 (0.0229) y - 7.1382 (0.0057) z = 7.0241 (0.0183) Angle to previous plane (with approximate esd) = 6.371 ( 0.143 ) * -0.0055 (0.0018) C31 * 0.0027 (0.0023) C32 * 0.0001 (0.0024) C33 * -0.0001 (0.0021) C34 * -0.0028 (0.0019) C35 * 0.0056 (0.0018) C36 Rms deviation of fitted atoms = 0.0036
xyzUiso*/Ueq
S10.66558 (2)0.40955 (2)0.37773 (7)0.01892 (12)
N10.71332 (8)0.30150 (8)0.2959 (2)0.0193 (4)
C20.72285 (9)0.35219 (9)0.3756 (3)0.0188 (4)
C30.77798 (10)0.36462 (10)0.4552 (3)0.0196 (4)
C40.82688 (10)0.32328 (10)0.4388 (3)0.0213 (5)
C50.81609 (10)0.27034 (10)0.3542 (3)0.0228 (5)
H50.8479320.2411180.3415320.027*
C60.75894 (10)0.25972 (10)0.2878 (3)0.0206 (5)
C70.78113 (10)0.41680 (10)0.5556 (3)0.0216 (5)
N20.78087 (9)0.45778 (9)0.6383 (3)0.0282 (5)
C110.60285 (9)0.36958 (10)0.2861 (3)0.0180 (4)
H110.6002430.3269530.3277700.022*
C120.54261 (10)0.40390 (10)0.3205 (3)0.0175 (4)
H120.5454120.4471000.2828230.021*
C130.49053 (9)0.37047 (9)0.2379 (3)0.0174 (4)
H130.4857200.3298830.2899170.021*
C140.50479 (10)0.35742 (10)0.0692 (3)0.0205 (5)
H140.4729700.3294280.0254780.025*
C150.56731 (10)0.32792 (11)0.0554 (3)0.0228 (5)
H15A0.5672520.2877930.1085590.027*
H15B0.5772360.320966−0.0545220.027*
O10.52797 (7)0.40316 (7)0.4791 (2)0.0205 (3)
H010.5536 (17)0.4259 (16)0.526 (5)0.046 (10)*
O20.43389 (7)0.40239 (8)0.2568 (2)0.0210 (3)
H020.4290 (15)0.4296 (16)0.194 (4)0.035 (9)*
O30.50739 (7)0.41263 (8)−0.0200 (2)0.0237 (4)
H030.4738 (18)0.4298 (17)−0.019 (5)0.047 (10)*
O40.61261 (7)0.36736 (7)0.1238 (2)0.0211 (3)
C210.88763 (10)0.33451 (11)0.5093 (3)0.0235 (5)
C220.91531 (11)0.39202 (12)0.5018 (4)0.0333 (6)
H220.8951560.4248490.4508520.040*
C230.97250 (12)0.40132 (13)0.5690 (4)0.0399 (7)
H230.9912020.4405440.5635130.048*
C241.00232 (11)0.35385 (13)0.6436 (4)0.0348 (6)
H241.0410420.3606140.6905700.042*
C250.97528 (11)0.29625 (12)0.6496 (3)0.0288 (5)
H250.9957120.2634830.7000370.035*
C260.91861 (10)0.28654 (11)0.5820 (3)0.0235 (5)
H260.9006510.2469320.5852050.028*
C310.74451 (11)0.20354 (10)0.1993 (3)0.0222 (5)
C320.68866 (11)0.19904 (11)0.1223 (4)0.0328 (6)
H320.6606980.2323460.1258140.039*
C330.67336 (13)0.14672 (13)0.0408 (4)0.0388 (7)
H330.6349720.144225−0.0104250.047*
C340.71408 (13)0.09782 (11)0.0337 (3)0.0332 (6)
H340.7036940.061962−0.0225830.040*
C350.76943 (12)0.10168 (10)0.1085 (3)0.0285 (5)
H350.7971260.0681640.1043830.034*
C360.78530 (11)0.15421 (10)0.1901 (3)0.0244 (5)
H360.8239870.1565880.2398920.029*
U11U22U33U12U13U23
S10.0153 (2)0.0177 (2)0.0237 (3)0.00191 (17)−0.0005 (2)−0.0018 (2)
N10.0185 (8)0.0196 (8)0.0198 (10)0.0026 (7)0.0021 (7)0.0003 (8)
C20.0165 (9)0.0198 (9)0.0199 (11)0.0019 (7)0.0029 (9)0.0025 (9)
C30.0193 (10)0.0185 (10)0.0210 (11)0.0010 (8)0.0007 (9)0.0029 (9)
C40.0185 (10)0.0235 (10)0.0220 (12)0.0010 (8)0.0029 (9)0.0066 (9)
C50.0212 (10)0.0231 (10)0.0243 (13)0.0058 (8)0.0044 (9)0.0041 (9)
C60.0208 (10)0.0208 (10)0.0201 (13)0.0037 (8)0.0043 (9)0.0035 (9)
C70.0167 (9)0.0221 (11)0.0260 (12)0.0004 (8)−0.0020 (9)0.0068 (10)
N20.0277 (10)0.0226 (9)0.0343 (13)0.0010 (7)−0.0043 (9)−0.0011 (10)
C110.0168 (9)0.0196 (9)0.0174 (11)−0.0003 (8)0.0016 (8)−0.0019 (9)
C120.0182 (9)0.0173 (9)0.0169 (11)−0.0005 (8)0.0015 (8)−0.0001 (8)
C130.0153 (9)0.0173 (9)0.0195 (11)0.0004 (7)0.0007 (8)0.0002 (8)
C140.0206 (10)0.0211 (10)0.0200 (12)−0.0030 (8)0.0000 (9)−0.0012 (9)
C150.0235 (10)0.0235 (10)0.0215 (12)−0.0014 (9)−0.0003 (9)−0.0057 (9)
O10.0189 (7)0.0255 (8)0.0170 (8)−0.0009 (6)0.0013 (6)−0.0033 (7)
O20.0159 (7)0.0249 (8)0.0221 (9)0.0016 (6)0.0008 (6)0.0020 (7)
O30.0187 (7)0.0305 (8)0.0219 (9)0.0003 (7)0.0006 (7)0.0056 (7)
O40.0189 (7)0.0248 (7)0.0196 (9)0.0001 (6)0.0017 (6)−0.0023 (7)
C210.0191 (10)0.0277 (11)0.0237 (12)0.0026 (9)0.0010 (9)0.0031 (10)
C220.0237 (11)0.0298 (12)0.0464 (17)0.0009 (9)−0.0023 (12)0.0098 (12)
C230.0256 (12)0.0336 (13)0.061 (2)−0.0070 (10)−0.0021 (13)0.0034 (14)
C240.0189 (10)0.0448 (14)0.0407 (17)0.0004 (10)−0.0018 (11)0.0000 (13)
C250.0235 (11)0.0362 (13)0.0265 (14)0.0071 (10)−0.0009 (10)0.0032 (11)
C260.0203 (10)0.0275 (11)0.0228 (13)0.0045 (8)0.0033 (9)0.0010 (9)
C310.0249 (11)0.0217 (10)0.0201 (12)0.0044 (9)0.0045 (9)0.0032 (9)
C320.0304 (12)0.0273 (11)0.0406 (16)0.0092 (9)−0.0058 (13)−0.0102 (13)
C330.0375 (14)0.0317 (13)0.0473 (18)0.0044 (11)−0.0101 (13)−0.0118 (13)
C340.0448 (14)0.0214 (11)0.0333 (15)0.0011 (10)0.0064 (12)−0.0060 (11)
C350.0382 (13)0.0172 (10)0.0301 (14)0.0058 (9)0.0135 (12)0.0045 (10)
C360.0262 (11)0.0214 (11)0.0256 (13)0.0048 (9)0.0059 (10)0.0061 (10)
S1—C21.770 (2)C15—H15B0.9900
S1—C111.808 (2)O1—H010.85 (4)
N1—C21.322 (3)O2—H020.81 (3)
N1—C61.352 (3)O3—H030.82 (4)
C2—C31.414 (3)C21—C221.395 (3)
C3—C41.405 (3)C21—C261.397 (3)
C3—C71.435 (3)C22—C231.393 (4)
C4—C51.389 (3)C22—H220.9500
C4—C211.481 (3)C23—C241.385 (4)
C5—C61.394 (3)C23—H230.9500
C5—H50.9500C24—C251.390 (4)
C6—C311.481 (3)C24—H240.9500
C7—N21.147 (3)C25—C261.385 (3)
C11—O41.425 (3)C25—H250.9500
C11—C121.543 (3)C26—H260.9500
C11—H111.0000C31—C321.394 (4)
C12—O11.413 (3)C31—C361.400 (3)
C12—C131.529 (3)C32—C331.384 (4)
C12—H121.0000C32—H320.9500
C13—O21.429 (2)C33—C341.391 (4)
C13—C141.523 (3)C33—H330.9500
C13—H131.0000C34—C351.374 (4)
C14—O31.434 (3)C34—H340.9500
C14—C151.514 (3)C35—C361.392 (4)
C14—H141.0000C35—H350.9500
C15—O41.439 (3)C36—H360.9500
C15—H15A0.9900
C2—S1—C11100.90 (10)C14—C15—H15A109.8
C2—N1—C6118.42 (19)O4—C15—H15B109.8
N1—C2—C3123.40 (19)C14—C15—H15B109.8
N1—C2—S1119.13 (17)H15A—C15—H15B108.2
C3—C2—S1117.41 (17)C12—O1—H01108 (3)
C4—C3—C2118.3 (2)C13—O2—H02113 (2)
C4—C3—C7122.3 (2)C14—O3—H03110 (3)
C2—C3—C7119.30 (19)C11—O4—C15108.96 (17)
C5—C4—C3117.3 (2)C22—C21—C26119.1 (2)
C5—C4—C21120.5 (2)C22—C21—C4121.2 (2)
C3—C4—C21122.1 (2)C26—C21—C4119.7 (2)
C4—C5—C6120.6 (2)C23—C22—C21120.0 (2)
C4—C5—H5119.7C23—C22—H22120.0
C6—C5—H5119.7C21—C22—H22120.0
N1—C6—C5121.7 (2)C24—C23—C22120.5 (3)
N1—C6—C31115.4 (2)C24—C23—H23119.7
C5—C6—C31122.9 (2)C22—C23—H23119.7
N2—C7—C3176.7 (2)C23—C24—C25119.7 (2)
O4—C11—C12109.55 (18)C23—C24—H24120.2
O4—C11—S1109.72 (14)C25—C24—H24120.2
C12—C11—S1109.07 (14)C26—C25—C24120.1 (2)
O4—C11—H11109.5C26—C25—H25119.9
C12—C11—H11109.5C24—C25—H25119.9
S1—C11—H11109.5C25—C26—C21120.6 (2)
O1—C12—C13106.43 (17)C25—C26—H26119.7
O1—C12—C11112.04 (18)C21—C26—H26119.7
C13—C12—C11108.15 (17)C32—C31—C36118.4 (2)
O1—C12—H12110.0C32—C31—C6119.5 (2)
C13—C12—H12110.0C36—C31—C6122.1 (2)
C11—C12—H12110.0C33—C32—C31120.9 (2)
O2—C13—C14112.23 (18)C33—C32—H32119.5
O2—C13—C12110.90 (17)C31—C32—H32119.5
C14—C13—C12112.80 (18)C32—C33—C34120.1 (3)
O2—C13—H13106.8C32—C33—H33119.9
C14—C13—H13106.8C34—C33—H33119.9
C12—C13—H13106.8C35—C34—C33119.6 (2)
O3—C14—C15106.23 (19)C35—C34—H34120.2
O3—C14—C13111.67 (18)C33—C34—H34120.2
C15—C14—C13109.85 (19)C34—C35—C36120.7 (2)
O3—C14—H14109.7C34—C35—H35119.7
C15—C14—H14109.7C36—C35—H35119.7
C13—C14—H14109.7C35—C36—C31120.3 (2)
O4—C15—C14109.43 (18)C35—C36—H36119.9
O4—C15—H15A109.8C31—C36—H36119.9
C6—N1—C2—C3−1.1 (4)C12—C13—C14—C1549.6 (2)
C6—N1—C2—S1176.09 (17)O3—C14—C15—O463.7 (2)
C11—S1—C2—N19.7 (2)C13—C14—C15—O4−57.2 (2)
C11—S1—C2—C3−172.95 (19)C12—C11—O4—C15−68.6 (2)
N1—C2—C3—C45.2 (4)S1—C11—O4—C15171.64 (14)
S1—C2—C3—C4−172.01 (18)C14—C15—O4—C1167.9 (2)
N1—C2—C3—C7−171.6 (2)C5—C4—C21—C22136.5 (3)
S1—C2—C3—C711.2 (3)C3—C4—C21—C22−44.1 (4)
C2—C3—C4—C5−4.8 (3)C5—C4—C21—C26−42.2 (3)
C7—C3—C4—C5171.9 (2)C3—C4—C21—C26137.2 (3)
C2—C3—C4—C21175.9 (2)C26—C21—C22—C23−1.3 (4)
C7—C3—C4—C21−7.4 (4)C4—C21—C22—C23−180.0 (3)
C3—C4—C5—C60.7 (3)C21—C22—C23—C24−0.1 (5)
C21—C4—C5—C6−180.0 (2)C22—C23—C24—C250.9 (5)
C2—N1—C6—C5−3.3 (3)C23—C24—C25—C26−0.5 (4)
C2—N1—C6—C31178.8 (2)C24—C25—C26—C21−0.9 (4)
C4—C5—C6—N13.6 (4)C22—C21—C26—C251.7 (4)
C4—C5—C6—C31−178.7 (2)C4—C21—C26—C25−179.5 (2)
C2—S1—C11—O4−77.26 (16)N1—C6—C31—C324.8 (3)
C2—S1—C11—C12162.73 (16)C5—C6—C31—C32−173.1 (3)
O4—C11—C12—O1175.15 (17)N1—C6—C31—C36−175.2 (2)
S1—C11—C12—O1−64.7 (2)C5—C6—C31—C367.0 (4)
O4—C11—C12—C1358.2 (2)C36—C31—C32—C331.0 (4)
S1—C11—C12—C13178.27 (14)C6—C31—C32—C33−178.9 (3)
O1—C12—C13—O263.3 (2)C31—C32—C33—C34−0.5 (5)
C11—C12—C13—O2−176.15 (17)C32—C33—C34—C350.2 (5)
O1—C12—C13—C14−169.85 (17)C33—C34—C35—C36−0.5 (4)
C11—C12—C13—C14−49.3 (2)C34—C35—C36—C311.1 (4)
O2—C13—C14—O358.2 (2)C32—C31—C36—C35−1.3 (4)
C12—C13—C14—O3−68.0 (2)C6—C31—C36—C35178.6 (2)
O2—C13—C14—C15175.75 (17)
D—H···AD—HH···AD···AD—H···A
O1—H01···O2i0.85 (4)2.12 (4)2.831 (2)140 (3)
O1—H01···O1i0.85 (4)2.42 (3)3.133 (2)141 (3)
O2—H02···O3ii0.81 (3)2.07 (4)2.883 (2)175 (3)
O3—H03···O3ii0.82 (4)1.94 (4)2.729 (2)159 (4)
C13—H13···N2iii1.002.573.547 (3)165
C34—H34···N2iv0.952.513.404 (3)157
  14 in total

1.  NIS/TFA: a general method for hydrolyzing thioglycosides.

Authors:  Jasper Dinkelaar; Martin D Witte; Leendert J van den Bos; Herman S Overkleeft; Gijsbert A van der Marel
Journal:  Carbohydr Res       Date:  2006-04-11       Impact factor: 2.104

Review 2.  Crystallization-induced diastereomer transformations.

Authors:  Karel M J Brands; Antony J Davies
Journal:  Chem Rev       Date:  2006-07       Impact factor: 60.622

3.  Nucleic acid components and their analogs: Design and synthesis of novel cytosine thioglycoside analogs.

Authors:  Galal H Elgemeie; Ali M Salah; Nermeen S Abbas; Hoda A Hussein; Reham A Mohamed
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2017-01-03       Impact factor: 1.381

4.  Antimetabolites: A First Synthesis of a New Class of Cytosine Thioglycoside Analogs.

Authors:  Galal Elgemeie; Mamdouh Abu-Zaied; Rasha Azzam
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2016-03-17       Impact factor: 1.381

5.  Novel Nucleoside Analogues: First Synthesis of Pyridine-4-Thioglycosides and Their Cytotoxic Evaluation.

Authors:  Galal Elgemeie; Mamdouh Abou-Zeid; Shahinaz Alsaid; Ali Hebishy; Hanaa Essa
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2015-10-13       Impact factor: 1.381

6.  Synthesis and biological activities of 2'-deoxy-2'-fluoro-4'-thioarabinofuranosylpyrimidine and -purine nucleosides.

Authors:  Y Yoshimura; K Kitano; K Yamada; S Sakata; S Miura; N Ashida; H Machida
Journal:  Bioorg Med Chem       Date:  2000-07       Impact factor: 3.641

7.  Heterocyclic thioglycosides in carbohydrate research: Synthesis of thiophene thioglycosides.

Authors:  Galal H Elgemeie; Mamdouh A Abu-Zaied
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2017-07-07       Impact factor: 1.381

8.  A general approach to the synthesis of 5-S-functionalized pyrimidine nucleosides and their analogues.

Authors:  Dzmitry G Kananovich; Alli Reino; Kaja Ilmarinen; Marko Rõõmusoks; Mati Karelson; Margus Lopp
Journal:  Org Biomol Chem       Date:  2014-06-25       Impact factor: 3.876

9.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

10.  Insulin and novel thioglycosides exert suppressive effect on human breast and colon carcinoma cells.

Authors:  Siddarth Agrawal; Marta Wozniak; Mateusz Luc; Kinga Walaszek; Ewa Pielka; Wieslaw Szeja; Gabriela Pastuch-Gawolek; Andrzej Gamian; Piotr Ziolkowski
Journal:  Oncotarget       Date:  2017-12-11
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  2 in total

1.  Novel purine thioglycoside analogs: synthesis, nanoformulation and biological evaluation in in vitro human liver and breast cancer models.

Authors:  Mamdouh A Abu-Zaied; Samah A Loutfy; Ashraf E Hassan; Galal H Elgemeie
Journal:  Drug Des Devel Ther       Date:  2019-07-26       Impact factor: 4.319

2.  Sofosbuvir Thio-analogues: Synthesis and Antiviral Evaluation of the First Novel Pyridine- and Pyrimidine-Based Thioglycoside Phosphoramidates.

Authors:  Mamdouh Attia Abu-Zaied; Sherif F Hammad; Fathi T Halaweish; Galal Hamza Elgemeie
Journal:  ACS Omega       Date:  2020-06-09
  2 in total

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