| Literature DB >> 29950491 |
Ryan W Hunter1,2, Yangjian Liu1, Hema Manjunath1, Asha Acharya1, Benjamin T Jones1, He Zhang3,4, Beibei Chen3,4, Harini Ramalingam1, Robert E Hammer5, Yang Xie3,4,6, James A Richardson1,7, Dinesh Rakheja6,7,8,9, Thomas J Carroll1,6,10,11, Joshua T Mendell1,6,11,12.
Abstract
Loss of function of the DIS3L2 exoribonuclease is associated with Wilms tumor and the Perlman congenital overgrowth syndrome. LIN28, a Wilms tumor oncoprotein, triggers the DIS3L2-mediated degradation of the precursor of let-7, a microRNA that inhibits Wilms tumor development. These observations have led to speculation that DIS3L2-mediated tumor suppression is attributable to let-7 regulation. Here we examine new DIS3L2-deficient cell lines and mouse models, demonstrating that DIS3L2 loss has no effect on mature let-7 levels. Rather, analysis of Dis3l2-null nephron progenitor cells, a potential cell of origin of Wilms tumors, reveals up-regulation of Igf2, a growth-promoting gene strongly associated with Wilms tumorigenesis. These findings nominate a new potential mechanism underlying the pathology associated with DIS3L2 deficiency.Entities:
Keywords: DIS3L2; Igf2; LIN28; Perlman syndrome; Wilms tumor; let-7; microRNA
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Year: 2018 PMID: 29950491 PMCID: PMC6075040 DOI: 10.1101/gad.315804.118
Source DB: PubMed Journal: Genes Dev ISSN: 0890-9369 Impact factor: 11.361
Figure 1.DIS3L2 loss does not affect mature let-7 levels in cell lines. (A) Western blot analysis of LIN28A/B. (B) Schematic of the gene-editing strategy used to generate DIS3L2 knockout cell lines. Arrowheads indicate editing sites for human and mouse cells. (C) Western blot analysis of DIS3L2 in knockout and parental cell lines. (D,E) Quantitative RT–PCR (qRT–PCR) measurement of let-7 family members normalized to U6 in DIS3L2 wild-type or knockout cell lines in which neither LIN28 paralog is expressed (D) or lines expressing either LIN28A or LIN28B (E). Due to the lower level of expression of let-7 family members in LIN28-expressing cell lines, these values were plotted separately. n = 3 biological replicates for each cell line assayed. Error bars for this and all subsequent figures represent standard deviations.
Figure 2.Dis3l2 loss of function partially recapitulates Perlman syndrome in mice. (A) Strategy for generating exon 11-floxed (Dis3l211fl) and exon 11-deleted (Dis3l2Δ11) alleles. Highly conserved residues in the DIS3L2 active site are indicated (DLDDAL). (B) Embryonic day 18.5 (E18.5) embryos of the indicated genotypes. Arrowheads mark abnormal curvature of the spine. (C) Representative images of a prematurely filled bladder (arrowhead) and hydroureter (asterisk) in E18.5 Dis3l2Δ11/Δ11 mice. (D,E,F) Total body weight (D), liver weight normalized to body weight (E), and kidney cross-sectional area (F) in E18.5 mice. n = 31–33 per genotype for whole body; n = 10–12 per genotype for livers; n = 6 per genotype for kidneys. (G) H&E-stained sections of E18.5 kidneys.
Figure 3.A Perlman syndrome-causing Dis3l2 mutation phenocopies complete loss of function. (A) A schematic of DIS3L2 protein domains (top), the exon structure of the human DIS3L2 gene showing the location of Perlman syndrome mutations (middle), and a table of alleles present in 10 Perlman syndrome patients showing the presence or absence of Wilms tumors (bottom). Note that patient 10 was heterozygous for the ΔExon 19 allele but did not have detectable DIS3L2 expression from the wild-type allele (Astuti et al. 2012). Red indicates a frameshift allele, and green represents a frame-preserving allele. (B) Strategy for generating exon 10 (orthologous to human exon 9) floxed (Dis3l210fl) and deleted (Dis3l2Δ10) alleles. (C) E18.5 embryos of the indicated genotypes. Arrowheads mark abnormal curvature of the spine. (D) Representative images of a prematurely filled bladder (arrowhead) and hydroureter (asterisk) in E18.5 Dis3l2Δ10/Δ10 mice. (E,F,G) Total body weight (E), liver weight normalized to body weight (F), and kidney cross-sectional area (G) in E18.5 mice. n = 10–11 per genotype for whole body; n = 7–10 per genotype for livers; n = 4 per genotype for kidneys. (H) H&E-stained E18.5 kidney sections. (I) Summary of Perlman syndrome-associated phenotypes in Dis3l2Δ11/Δ11 and Dis3l2Δ10/Δ10 mice.
Figure 4.The effect of DIS3L2 loss of function on the NPC transcriptome. (A) Schematic of primary NPC culture derivation. (B) qRT–PCR measurements of let-7 family members normalized to U6 in Dis3l2+/+ and Dis3l2Δ11/Δ11 NPC cultures. n = 2 (let-7a and let-7f) or n = 3 (all others) independently derived NPC lines per genotype, each measured in triplicate. (C) Volcano plot depicting RNA sequencing results from Dis3l2+/+ and Dis3l2Δ11/Δ11 NPCs. EdgeR P < 10−10 for genes plotted above the dotted line. (D,E) qRT–PCR measurements of spliced (D) and unspliced (E) transcripts normalized to 18S in NPC cultures derived independently from those used in C. Error bars represent standard deviation of technical triplicates.