Literature DB >> 29948163

Mutability analysis towards 21 STR loci included in the AGCU 21 + 1 kit in Chinese Han population.

Qiong Lan1,2, Hongdan Wang3, Chunmei Shen4, Yuxin Guo2,5, Caiyong Yin6, Tong Xie1, Yating Fang1, Yongsong Zhou1, Bofeng Zhu7,8,9.   

Abstract

To further illustrate the mutation traits of 21 autosomal STR loci involved in the newly developed AGCU 21 + 1 kit, randomly selected 485 trios were focused on. We have previously confirmed the biological father-mother-child relationships of these trios. Then matters of mutation rates, steps, and origins of the 21 STR loci were statically analyzed. Results showed 35 mutation events occurred at 16 STR loci of the panel during 20,370 meiosis, and the locus-specific mutation rates ranged from 0.000 to 1.134% (D3S4529), with an overall mutation rate of 1.72 × 10-3 (95%CI, 1.20-2.39 × 10-3). Mutation origins exhibited slight discrepancy between male and female germlines, 18 of the 35 mutation events were verified to be contributed by fathers and 13 by mothers, with origins of the remaining 4 events hardly to be assigned. Furthermore, 77.14% of the mutations were one-step mutation. Currently, portraits on mutability of the STR loci involved in the AGCU 21 + 1 panel were barely reported. In view of this, we conclude our data will enrich the mutation information of the 21 STR loci and provide valuable suggestions in calculating likelihood ratios for mutation-involved parental testing cases.

Entities:  

Keywords:  AGCU 21 + 1; Han population; Mutation rate; Short tandem repeats

Mesh:

Year:  2018        PMID: 29948163     DOI: 10.1007/s00414-018-1873-x

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  25 in total

1.  An SNP map of human chromosome 22.

Authors:  J C Mullikin; S E Hunt; C G Cole; B J Mortimore; C M Rice; J Burton; L H Matthews; R Pavitt; R W Plumb; S K Sims; R M Ainscough; J Attwood; J M Bailey; K Barlow; R M Bruskiewich; P N Butcher; N P Carter; Y Chen; C M Clee; P C Coggill; J Davies; R M Davies; E Dawson; M D Francis; A A Joy; R G Lamble; C F Langford; J Macarthy; V Mall; A Moreland; E K Overton-Larty; M T Ross; L C Smith; C A Steward; J E Sulston; E J Tinsley; K J Turney; D L Willey; G D Wilson; A A McMurray; I Dunham; J Rogers; D R Bentley
Journal:  Nature       Date:  2000-09-28       Impact factor: 49.962

2.  Allelic frequency distributions of 21 non-combined DNA index system STR loci in a Russian ethnic minority group from Inner Mongolia, China.

Authors:  Hong-dan Wang; Chun-mei Shen; Wen-juan Liu; Yu-dang Zhang; Guang Yang; Jiang-wei Yan; Hai-xia Qin; Bo-feng Zhu
Journal:  J Zhejiang Univ Sci B       Date:  2013-06       Impact factor: 3.066

3.  Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat.

Authors:  B Brinkmann; M Klintschar; F Neuhuber; J Hühne; B Rolf
Journal:  Am J Hum Genet       Date:  1998-06       Impact factor: 11.025

4.  Germline mutations of STR-alleles include multi-step mutations as defined by sequencing of repeat and flanking regions.

Authors:  Eva-Maria Dauber; Adelgunde Kratzer; Franz Neuhuber; Walther Parson; Michael Klintschar; Walter Bär; Wolfgang R Mayr
Journal:  Forensic Sci Int Genet       Date:  2011-08-27       Impact factor: 4.882

5.  Allelic polymorphic investigation of 21 autosomal short tandem repeat loci in a Chinese Bai ethnic group.

Authors:  Chun-mei Shen; Hong-dan Wang; Wen-juan Liu; Shuan-liang Fan; Guang Yang; Hai-Xia Qin; Tong Xie; Shao-bo Li; Jiang-wei Yan; Bo-feng Zhu
Journal:  Leg Med (Tokyo)       Date:  2012-10-05       Impact factor: 1.376

6.  Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. BioTechniques 10(4): 506-13 (April 1991).

Authors:  P Sean Walsh; David A Metzger; Russell Higushi
Journal:  Biotechniques       Date:  2013-03       Impact factor: 1.993

7.  Comparison of southern Chinese Han and Brazilian Caucasian mutation rates at autosomal short tandem repeat loci used in human forensic genetics.

Authors:  Hongyu Sun; Sujuan Liu; Yinming Zhang; Martin R Whittle
Journal:  Int J Legal Med       Date:  2013-04-03       Impact factor: 2.686

8.  Sequence and organization of the human mitochondrial genome.

Authors:  S Anderson; A T Bankier; B G Barrell; M H de Bruijn; A R Coulson; J Drouin; I C Eperon; D P Nierlich; B A Roe; F Sanger; P H Schreier; A J Smith; R Staden; I G Young
Journal:  Nature       Date:  1981-04-09       Impact factor: 49.962

9.  Genetic variability and phylogenetic analysis of Han population from Guanzhong region of China based on 21 non-CODIS STR loci.

Authors:  Yu-Dang Zhang; Xiao-Li Tang; Hao-Tian Meng; Hong-Dan Wang; Rui Jin; Chun-Hua Yang; Jiang-Wei Yan; Guang Yang; Wen-Juan Liu; Chun-Mei Shen; Bo-Feng Zhu
Journal:  Sci Rep       Date:  2015-03-09       Impact factor: 4.379

10.  Heterozygosity increases microsatellite mutation rate, linking it to demographic history.

Authors:  William Amos; Jonathan Flint; Xin Xu
Journal:  BMC Genet       Date:  2008-11-14       Impact factor: 2.797

View more
  1 in total

1.  Estimations of Mutation Rates Depend on Population Allele Frequency Distribution: The Case of Autosomal Microsatellites.

Authors:  Sofia Antão-Sousa; Eduardo Conde-Sousa; Leonor Gusmão; António Amorim; Nádia Pinto
Journal:  Genes (Basel)       Date:  2022-07-14       Impact factor: 4.141

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.